Wall clock time and date at job start Tue Mar 31 2020 11:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46497 * 120.00447 * 2 1 4 4 H 1.09003 * 110.01445 * 309.93055 * 3 2 1 5 5 C 1.54259 * 110.03451 * 188.53392 * 3 2 1 6 6 C 1.54968 * 104.16192 * 217.13600 * 5 3 2 7 7 C 1.54890 * 102.77550 * 37.89057 * 6 5 3 8 8 C 1.53872 * 110.02833 * 71.31577 * 3 2 1 9 9 H 1.09006 * 110.02864 * 238.56655 * 8 3 2 10 10 C 1.52991 * 110.03872 * 0.02562 * 8 3 2 11 11 C 1.53001 * 109.46785 * 37.86828 * 10 8 3 12 12 C 1.53003 * 109.47590 * 157.86588 * 10 8 3 13 13 C 1.53000 * 109.47322 * 277.87028 * 10 8 3 14 14 S 1.65604 * 119.99597 * 180.02562 * 2 1 3 15 15 O 1.42099 * 104.27601 * 345.25422 * 14 2 1 16 16 O 1.42098 * 104.27680 * 217.39450 * 14 2 1 17 17 C 1.81403 * 104.44749 * 101.32387 * 14 2 1 18 18 C 1.53003 * 109.46938 * 175.00434 * 17 14 2 19 19 C 1.50696 * 109.47041 * 179.97438 * 18 17 14 20 20 H 1.08007 * 119.99896 * 0.02562 * 19 18 17 21 21 C 1.37877 * 120.00062 * 180.02562 * 19 18 17 22 22 N 1.31515 * 120.00007 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00051 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46961 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47378 * 120.00175 * 23 21 19 26 26 H 1.48499 * 109.46959 * 239.99821 * 23 21 19 27 27 H 1.09002 * 109.46966 * 268.72599 * 1 2 3 28 28 H 1.08998 * 109.46970 * 28.72409 * 1 2 3 29 29 H 1.08995 * 109.48013 * 148.72747 * 1 2 3 30 30 H 1.09003 * 110.48853 * 335.78709 * 5 3 2 31 31 H 1.09003 * 110.48903 * 98.42363 * 5 3 2 32 32 H 1.08998 * 110.71829 * 279.57487 * 6 5 3 33 33 H 1.09003 * 110.76273 * 156.21842 * 6 5 3 34 34 H 1.08998 * 110.48348 * 203.40893 * 7 6 5 35 35 H 1.09000 * 110.60253 * 80.81587 * 7 6 5 36 36 H 1.08998 * 109.47372 * 41.22703 * 11 10 8 37 37 H 1.09007 * 109.47341 * 161.23047 * 11 10 8 38 38 H 1.09006 * 109.46967 * 281.22732 * 11 10 8 39 39 H 1.08994 * 109.46872 * 64.79258 * 12 10 8 40 40 H 1.08996 * 109.47389 * 184.79033 * 12 10 8 41 41 H 1.08996 * 109.46758 * 304.79054 * 12 10 8 42 42 H 1.08996 * 109.47067 * 48.07130 * 13 10 8 43 43 H 1.09001 * 109.47445 * 168.07630 * 13 10 8 44 44 H 1.08998 * 109.47139 * 288.06943 * 13 10 8 45 45 H 1.08997 * 109.47335 * 295.00713 * 17 14 2 46 46 H 1.09000 * 109.47176 * 55.00922 * 17 14 2 47 47 H 1.08997 * 109.47336 * 300.00279 * 18 17 14 48 48 H 1.09000 * 109.46789 * 60.00251 * 18 17 14 49 49 H 0.97004 * 119.99885 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 1 1.8148 1.9205 -0.7854 5 6 3.7030 1.0096 -0.2151 6 6 4.4009 2.0561 0.6901 7 6 3.4870 2.0916 1.9401 8 6 2.0600 1.9566 1.3695 9 1 1.6115 2.9427 1.2485 10 6 1.2019 1.1001 2.3026 11 6 1.5178 -0.3790 2.0716 12 6 1.5080 1.4660 3.7563 13 6 -0.2784 1.3567 2.0129 14 16 2.2929 -1.4342 -0.0006 15 8 1.3147 -2.4037 0.3494 16 8 3.4156 -1.1911 0.8358 17 6 2.8179 -1.6530 -1.7232 18 6 3.7069 -2.8935 -1.8318 19 6 4.1425 -3.0756 -3.2628 20 1 3.8181 -2.3762 -4.0192 21 6 4.9552 -4.1350 -3.6066 22 7 5.3498 -4.9869 -2.6856 23 14 5.4958 -4.3603 -5.3804 24 1 4.9195 -3.2757 -6.2151 25 1 6.9780 -4.3098 -5.4565 26 1 5.0191 -5.6751 -5.8799 27 1 -0.3633 -0.0228 1.0274 28 1 -0.3633 0.9012 -0.4939 29 1 -0.3635 -0.8783 -0.5334 30 1 3.9648 -0.0010 0.0985 31 1 3.9719 1.1675 -1.2595 32 1 4.4272 3.0308 0.2030 33 1 5.4060 1.7284 0.9556 34 1 3.5989 3.0388 2.4676 35 1 3.7128 1.2572 2.6041 36 1 2.5934 -0.5058 1.9481 37 1 1.1794 -0.9610 2.9288 38 1 1.0058 -0.7239 1.1732 39 1 1.2036 2.4957 3.9436 40 1 0.9606 0.7986 4.4220 41 1 2.5777 1.3643 3.9390 42 1 -0.4533 1.3014 0.9385 43 1 -0.8834 0.6042 2.5187 44 1 -0.5532 2.3472 2.3753 45 1 1.9403 -1.7782 -2.3574 46 1 3.3777 -0.7754 -2.0467 47 1 4.5845 -2.7683 -1.1975 48 1 3.1471 -3.7710 -1.5083 49 1 5.9219 -5.7321 -2.9274 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416671033.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:15 Heat of formation + Delta-G solvation = 96.834217 kcal Electronic energy + Delta-G solvation = -28243.912772 eV Core-core repulsion = 24726.636050 eV Total energy + Delta-G solvation = -3517.276722 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.52333 -38.90255 -37.50995 -36.45257 -35.91293 -35.68032 -33.20083 -29.88089 -29.24798 -28.72269 -28.08169 -27.23457 -25.19518 -23.59989 -22.00111 -21.87618 -20.61504 -19.62275 -18.58815 -17.93937 -17.63617 -17.14462 -16.92269 -16.78339 -16.54699 -15.90868 -15.46116 -15.25729 -14.90498 -14.71811 -14.35931 -14.25715 -13.88534 -13.82002 -13.68146 -13.43725 -13.23587 -12.98303 -12.86250 -12.69725 -12.55028 -12.32322 -12.28295 -12.20867 -12.14147 -11.99487 -11.80407 -11.75412 -11.65121 -11.40696 -11.16376 -10.98880 -10.81826 -10.66788 -10.40256 -10.26336 -9.10182 -8.27312 -6.41577 -0.78675 1.40782 1.41162 1.54535 1.67737 2.37295 2.76409 3.05578 3.07003 3.47514 3.71555 3.73586 3.94424 3.97926 4.02314 4.16011 4.25913 4.35199 4.49492 4.60952 4.65425 4.68107 4.72125 4.73434 4.79480 4.84856 4.88201 4.95805 4.98635 5.00682 5.10283 5.10308 5.13070 5.21889 5.23966 5.24551 5.25629 5.31326 5.37789 5.45998 5.55744 5.63575 5.66003 5.68617 5.81461 5.87891 6.04162 6.71849 7.28954 8.85137 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.023608 B = 0.004231 C = 0.003995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.740517 B = 6615.864094 C = 7007.444178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.988 5.988 3 C 0.160 3.840 4 H 0.110 0.890 5 C -0.258 4.258 6 C -0.105 4.105 7 C -0.120 4.120 8 C -0.086 4.086 9 H 0.102 0.898 10 C -0.034 4.034 11 C -0.324 4.324 12 C -0.145 4.145 13 C -0.192 4.192 14 S 2.627 3.373 15 O -0.996 6.996 16 O -0.957 6.957 17 C -0.598 4.598 18 C 0.022 3.978 19 C -0.538 4.538 20 H 0.076 0.924 21 C -0.002 4.002 22 N -0.934 5.934 23 Si 0.973 3.027 24 H -0.255 1.255 25 H -0.277 1.277 26 H -0.278 1.278 27 H 0.114 0.886 28 H 0.120 0.880 29 H 0.062 0.938 30 H 0.130 0.870 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.057 0.943 34 H 0.080 0.920 35 H 0.052 0.948 36 H 0.124 0.876 37 H 0.014 0.986 38 H 0.118 0.882 39 H 0.069 0.931 40 H 0.040 0.960 41 H 0.052 0.948 42 H 0.118 0.882 43 H 0.049 0.951 44 H 0.060 0.940 45 H 0.138 0.862 46 H 0.146 0.854 47 H 0.011 0.989 48 H 0.002 0.998 49 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.029 19.156 6.062 22.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.826 5.826 3 C 0.055 3.945 4 H 0.128 0.872 5 C -0.295 4.295 6 C -0.143 4.143 7 C -0.158 4.158 8 C -0.106 4.106 9 H 0.120 0.880 10 C -0.035 4.035 11 C -0.381 4.381 12 C -0.203 4.203 13 C -0.248 4.248 14 S 2.729 3.271 15 O -0.986 6.986 16 O -0.946 6.946 17 C -0.730 4.730 18 C -0.017 4.017 19 C -0.577 4.577 20 H 0.094 0.906 21 C -0.201 4.201 22 N -0.573 5.573 23 Si 0.796 3.204 24 H -0.179 1.179 25 H -0.203 1.203 26 H -0.204 1.204 27 H 0.131 0.869 28 H 0.138 0.862 29 H 0.081 0.919 30 H 0.146 0.854 31 H 0.098 0.902 32 H 0.102 0.898 33 H 0.075 0.925 34 H 0.099 0.901 35 H 0.071 0.929 36 H 0.141 0.859 37 H 0.033 0.967 38 H 0.135 0.865 39 H 0.088 0.912 40 H 0.059 0.941 41 H 0.071 0.929 42 H 0.136 0.864 43 H 0.068 0.932 44 H 0.079 0.921 45 H 0.157 0.843 46 H 0.164 0.836 47 H 0.030 0.970 48 H 0.020 0.980 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.858 18.456 6.837 22.012 hybrid contribution 0.621 -0.727 -0.935 1.337 sum -9.237 17.729 5.903 20.844 Atomic orbital electron populations 1.23460 0.77351 1.04094 1.06050 1.57671 1.15148 1.20048 1.89704 1.21767 0.90387 0.83791 0.98557 0.87179 1.24703 0.94856 1.08089 1.01889 1.22240 0.98181 0.98321 0.95535 1.22526 0.94275 1.01565 0.97420 1.22232 0.95575 0.99116 0.93684 0.87960 1.20132 0.95904 0.92765 0.94673 1.26298 1.08859 0.99183 1.03802 1.22050 1.01409 1.01353 0.95442 1.23222 0.94244 1.01055 1.06247 1.05094 0.73275 0.72280 0.76450 1.93497 1.60234 1.61309 1.83604 1.93020 1.55272 1.82480 1.63825 1.30436 1.11145 1.08688 1.22746 1.18823 0.93549 0.90150 0.99167 1.21521 1.30791 1.11618 0.93795 0.90625 1.26102 0.95919 0.95303 1.02745 1.70106 1.35965 1.15579 1.35679 0.85282 0.78090 0.78538 0.78479 1.17859 1.20255 1.20375 0.86910 0.86215 0.91918 0.85389 0.90236 0.89781 0.92452 0.90142 0.92884 0.85925 0.96727 0.86495 0.91215 0.94061 0.92884 0.86430 0.93202 0.92134 0.84328 0.83630 0.97041 0.97963 0.92352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 6.93 127.77 0.89 1.52 16 2 N -0.99 -24.87 1.69 -645.58 -1.09 -25.96 16 3 C 0.16 3.39 3.26 45.71 0.15 3.54 16 4 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 5 C -0.26 -6.69 4.72 31.69 0.15 -6.54 16 6 C -0.10 -2.33 6.91 31.91 0.22 -2.11 16 7 C -0.12 -2.58 4.90 31.67 0.16 -2.43 16 8 C -0.09 -1.67 2.43 -10.07 -0.02 -1.70 16 9 H 0.10 1.44 8.00 -2.38 -0.02 1.42 16 10 C -0.03 -0.77 0.52 -52.18 -0.03 -0.79 16 11 C -0.32 -10.11 5.12 71.98 0.37 -9.74 16 12 C -0.15 -3.10 7.94 71.98 0.57 -2.53 16 13 C -0.19 -3.27 6.81 71.98 0.49 -2.78 16 14 S 2.63 94.88 3.16 -56.49 -0.18 94.71 16 15 O -1.00 -41.75 15.54 -127.65 -1.98 -43.73 16 16 O -0.96 -38.13 10.84 -127.65 -1.38 -39.51 16 17 C -0.60 -22.92 5.84 71.98 0.42 -22.50 16 18 C 0.02 1.15 4.98 29.85 0.15 1.30 16 19 C -0.54 -29.74 9.11 25.60 0.23 -29.51 16 20 H 0.08 3.86 7.74 -2.91 -0.02 3.84 16 21 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 22 N -0.93 -56.64 13.29 21.45 0.28 -56.36 16 23 Si 0.97 42.99 29.54 68.60 2.03 45.01 16 24 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 25 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 26 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 27 H 0.11 2.27 2.82 -23.53 -0.07 2.20 16 28 H 0.12 1.36 7.04 -2.39 -0.02 1.34 16 29 H 0.06 1.31 7.52 -2.39 -0.02 1.29 16 30 H 0.13 4.29 3.01 -30.08 -0.09 4.20 16 31 H 0.08 1.86 7.67 -2.39 -0.02 1.84 16 32 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.05 1.41 5.74 -2.39 -0.01 1.40 16 36 H 0.12 4.40 2.87 -20.41 -0.06 4.34 16 37 H 0.01 0.47 7.93 -2.38 -0.02 0.45 16 38 H 0.12 3.57 0.62 -168.08 -0.10 3.46 16 39 H 0.07 1.17 8.10 -2.39 -0.02 1.15 16 40 H 0.04 0.92 8.04 -2.39 -0.02 0.90 16 41 H 0.05 1.21 5.83 -2.39 -0.01 1.19 16 42 H 0.12 1.61 3.19 -31.65 -0.10 1.51 16 43 H 0.05 0.92 7.63 -2.39 -0.02 0.90 16 44 H 0.06 0.83 8.06 -2.39 -0.02 0.82 16 45 H 0.14 4.74 8.14 -2.39 -0.02 4.72 16 46 H 0.15 4.87 6.63 -2.39 -0.02 4.85 16 47 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 48 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 49 H 0.27 15.13 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -71.92 344.04 2.44 -69.49 By element: Atomic # 1 Polarization: 29.73 SS G_CDS: 0.56 Total: 30.29 kcal Atomic # 6 Polarization: -78.14 SS G_CDS: 4.20 Total: -73.93 kcal Atomic # 7 Polarization: -81.51 SS G_CDS: -0.81 Total: -82.32 kcal Atomic # 8 Polarization: -79.88 SS G_CDS: -3.37 Total: -83.25 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.01 kcal Atomic # 16 Polarization: 94.88 SS G_CDS: -0.18 Total: 94.71 kcal Total: -71.92 2.44 -69.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416671033.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.323 kcal (2) G-P(sol) polarization free energy of solvation -71.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds