Wall clock time and date at job start Tue Mar 31 2020 11:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46907 * 2 1 4 4 C 1.52997 * 109.47534 * 239.99966 * 2 1 3 5 5 C 1.50701 * 109.47297 * 59.99558 * 4 2 1 6 6 H 1.08004 * 119.99655 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00187 * 180.02562 * 5 4 2 8 8 N 1.31517 * 120.00307 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 120.00108 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46978 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.46848 * 119.99759 * 9 7 5 12 12 H 1.48499 * 109.47103 * 239.99915 * 9 7 5 13 13 C 1.52997 * 109.46968 * 119.99479 * 2 1 3 14 14 N 1.46499 * 109.47551 * 302.95115 * 13 2 1 15 15 C 1.34774 * 120.00139 * 184.45303 * 14 13 2 16 16 O 1.21286 * 120.00079 * 354.94141 * 15 14 13 17 17 C 1.50697 * 119.99924 * 174.94781 * 15 14 13 18 18 O 1.42901 * 115.54758 * 323.54941 * 17 15 14 19 19 C 1.35895 * 117.00677 * 294.36307 * 18 17 15 20 20 C 1.38739 * 120.05417 * 355.24003 * 19 18 17 21 21 C 1.38136 * 119.94659 * 179.77065 * 20 19 18 22 22 C 1.38268 * 120.05679 * 0.50778 * 21 20 19 23 23 C 1.38271 * 120.10908 * 359.74407 * 22 21 20 24 24 C 1.38144 * 120.05418 * 0.02562 * 23 22 21 25 25 C 1.52996 * 117.50421 * 109.22505 * 17 15 14 26 26 C 1.53006 * 117.49986 * 177.88926 * 17 15 14 27 27 H 1.08998 * 109.47317 * 304.99451 * 1 2 3 28 28 H 1.08995 * 109.47063 * 64.99710 * 1 2 3 29 29 H 1.09004 * 109.46606 * 184.99267 * 1 2 3 30 30 H 1.08996 * 109.47213 * 179.97438 * 3 2 1 31 31 H 1.09005 * 109.46797 * 299.99949 * 3 2 1 32 32 H 1.09000 * 109.47170 * 59.99419 * 3 2 1 33 33 H 1.08996 * 109.47317 * 179.97438 * 4 2 1 34 34 H 1.09001 * 109.46737 * 300.00187 * 4 2 1 35 35 H 0.96995 * 120.00534 * 179.97438 * 8 7 5 36 36 H 1.09000 * 109.46992 * 182.95348 * 13 2 1 37 37 H 1.09001 * 109.47040 * 62.95888 * 13 2 1 38 38 H 0.97001 * 119.99613 * 4.45781 * 14 13 2 39 39 H 1.08003 * 120.02663 * 0.02562 * 20 19 18 40 40 H 1.07998 * 119.97513 * 180.25526 * 21 20 19 41 41 H 1.07993 * 119.94713 * 179.72774 * 22 21 20 42 42 H 1.07999 * 119.97432 * 180.02562 * 23 22 21 43 43 H 1.07998 * 120.02771 * 180.02562 * 24 23 22 44 44 H 1.08997 * 117.50166 * 214.99889 * 25 17 15 45 45 H 1.09005 * 117.49448 * 0.02562 * 25 17 15 46 46 H 1.09003 * 117.49810 * 359.96878 * 26 17 15 47 47 H 1.08996 * 117.50324 * 144.96972 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9171 0.8674 -2.3806 7 6 1.8705 -0.4823 -3.7319 8 7 2.6267 -1.5515 -3.8526 9 14 1.2483 0.3986 -5.2572 10 1 0.4236 1.5656 -4.8531 11 1 2.4036 0.8645 -6.0655 12 1 0.4227 -0.5343 -6.0655 13 6 2.0400 -0.7211 1.2493 14 7 1.4945 -0.0728 2.4444 15 6 1.8798 -0.4830 3.6690 16 8 2.6063 -1.4473 3.7847 17 6 1.4080 0.2563 4.8944 18 8 1.2984 1.6743 4.7546 19 6 2.4512 2.3655 4.5545 20 6 3.6718 1.7070 4.5922 21 6 4.8418 2.4110 4.3838 22 6 4.7981 3.7728 4.1481 23 6 3.5833 4.4323 4.1151 24 6 2.4100 3.7320 4.3182 25 6 0.3893 -0.4456 5.7945 26 6 1.8398 -0.2878 6.2577 27 1 -0.3634 0.5893 0.8418 28 1 -0.3633 0.4343 -0.9313 29 1 -0.3633 -1.0238 0.0894 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6765 1.9564 0.8899 33 1 3.1301 -0.7208 -1.2494 34 1 1.6767 -1.7489 -1.2491 35 1 2.8605 -1.8833 -4.7335 36 1 3.1287 -0.6755 1.2762 37 1 1.7206 -1.7630 1.2232 38 1 0.8558 0.6518 2.3543 39 1 3.7068 0.6441 4.7804 40 1 5.7919 1.8981 4.4090 41 1 5.7143 4.3222 3.9897 42 1 3.5517 5.4960 3.9304 43 1 1.4614 4.2475 4.2920 44 1 -0.3645 0.1741 6.2801 45 1 0.0606 -1.4425 5.5006 46 1 2.4647 -1.1808 6.2682 47 1 2.0405 0.4358 7.0478 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000421566923.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:10 Heat of formation + Delta-G solvation = -31.477678 kcal Electronic energy + Delta-G solvation = -27265.375892 eV Core-core repulsion = 23607.091197 eV Total energy + Delta-G solvation = -3658.284695 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.02994 -39.27893 -37.91714 -37.05786 -35.25356 -33.62252 -32.08513 -31.06404 -29.86259 -27.31025 -26.68159 -26.50747 -24.42105 -23.25336 -22.96581 -22.29830 -22.03083 -20.08269 -18.98920 -17.87967 -17.01118 -16.49365 -16.23215 -15.94538 -15.72538 -15.00161 -14.77135 -14.62127 -14.46680 -14.14547 -13.95980 -13.57037 -13.39152 -13.23795 -13.05060 -12.76891 -12.16713 -12.10958 -12.07842 -11.89362 -11.79942 -11.39212 -11.20377 -11.05791 -11.01274 -10.82996 -10.65622 -10.45650 -10.38947 -10.23773 -9.91182 -9.88425 -9.19586 -9.10459 -8.93288 -8.81080 -8.36962 -8.34783 -6.00827 -4.02002 1.23609 1.30713 2.37753 2.58763 3.10550 3.29719 3.37906 3.40530 3.59954 3.70596 4.37223 4.44253 4.49018 4.58837 4.73299 4.84246 4.98774 5.08241 5.25034 5.27349 5.34861 5.37098 5.47377 5.51368 5.59582 5.60546 5.74428 5.75798 5.88723 6.15856 6.17456 6.21607 6.24840 6.30809 6.38128 6.42911 6.50653 6.61527 6.62964 6.72436 7.05428 7.07016 7.11029 7.16754 7.62169 7.64918 7.74844 7.97808 8.22957 8.40021 9.02823 9.61259 11.10698 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014852 B = 0.003542 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.857303 B = 7903.403841 C = 8854.014382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.071 4.071 3 C -0.126 4.126 4 C 0.036 3.964 5 C -0.510 4.510 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.127 3.873 14 N -0.704 5.704 15 C 0.531 3.469 16 O -0.535 6.535 17 C -0.002 4.002 18 O -0.271 6.271 19 C 0.121 3.879 20 C -0.193 4.193 21 C -0.080 4.080 22 C -0.154 4.154 23 C -0.084 4.084 24 C -0.148 4.148 25 C -0.124 4.124 26 C -0.162 4.162 27 H 0.029 0.971 28 H 0.071 0.929 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.067 0.933 32 H 0.029 0.971 33 H 0.018 0.982 34 H 0.018 0.982 35 H 0.259 0.741 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.403 0.597 39 H 0.131 0.869 40 H 0.124 0.876 41 H 0.123 0.877 42 H 0.128 0.872 43 H 0.130 0.870 44 H 0.115 0.885 45 H 0.116 0.884 46 H 0.119 0.881 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.464 8.551 20.797 22.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.072 4.072 3 C -0.183 4.183 4 C -0.001 4.001 5 C -0.548 4.548 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.716 3.284 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.004 3.996 14 N -0.355 5.355 15 C 0.315 3.685 16 O -0.413 6.413 17 C -0.045 4.045 18 O -0.185 6.185 19 C 0.077 3.923 20 C -0.212 4.212 21 C -0.099 4.099 22 C -0.173 4.173 23 C -0.102 4.102 24 C -0.167 4.167 25 C -0.161 4.161 26 C -0.200 4.200 27 H 0.048 0.952 28 H 0.090 0.910 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.048 0.952 33 H 0.037 0.963 34 H 0.037 0.963 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.239 0.761 39 H 0.149 0.851 40 H 0.142 0.858 41 H 0.141 0.859 42 H 0.146 0.854 43 H 0.147 0.853 44 H 0.133 0.867 45 H 0.134 0.866 46 H 0.137 0.863 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -1.048 7.832 20.719 22.175 hybrid contribution -0.401 0.654 -1.100 1.341 sum -1.449 8.486 19.619 21.425 Atomic orbital electron populations 1.21791 0.95279 1.00675 1.00941 1.20902 0.95491 0.95933 0.94855 1.21746 1.00442 0.95785 1.00311 1.19087 0.96356 0.95200 0.89460 1.21216 1.31119 1.12035 0.90480 0.92173 1.25007 0.95299 0.95071 0.99079 1.69972 1.37013 1.23079 1.23338 0.86598 0.78621 0.79706 0.83445 1.19773 1.21117 1.21123 1.21724 0.98376 0.96626 0.82825 1.46118 1.45746 1.38134 1.05460 1.19552 0.80763 0.84280 0.83943 1.90728 1.37098 1.27312 1.86171 1.22171 1.10126 0.80001 0.92174 1.86093 1.29025 1.16586 1.86762 1.19042 0.84998 0.91649 0.96614 1.21444 0.92189 1.00998 1.06571 1.20988 0.97794 0.94205 0.96876 1.21089 0.98038 0.94675 1.03453 1.20945 0.91659 0.99772 0.97855 1.20406 0.99517 0.91095 1.05690 1.23353 0.93432 1.01167 0.98137 1.23608 0.97965 1.04102 0.94323 0.95242 0.91018 0.93438 0.93483 0.91435 0.95200 0.96348 0.96339 0.93095 0.91612 0.91651 0.76074 0.85088 0.85815 0.85935 0.85379 0.85250 0.86690 0.86558 0.86315 0.87081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.31 8.02 37.16 0.30 -2.01 16 2 C -0.07 -1.38 0.54 -154.51 -0.08 -1.46 16 3 C -0.13 -2.31 8.08 37.16 0.30 -2.01 16 4 C 0.04 0.90 4.04 -27.88 -0.11 0.78 16 5 C -0.51 -13.57 7.59 -34.44 -0.26 -13.83 16 6 H 0.06 1.55 5.69 -52.48 -0.30 1.25 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.89 -26.41 13.29 55.43 0.74 -25.67 16 9 Si 0.89 21.22 29.54 -169.99 -5.02 16.19 16 10 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 13 C 0.13 2.29 4.57 -4.04 -0.02 2.27 16 14 N -0.70 -10.87 4.93 -60.30 -0.30 -11.17 16 15 C 0.53 8.10 5.65 -10.99 -0.06 8.03 16 16 O -0.54 -9.68 16.10 5.55 0.09 -9.60 16 17 C 0.00 -0.03 1.67 -91.77 -0.15 -0.18 16 18 O -0.27 -3.38 10.08 -19.41 -0.20 -3.58 16 19 C 0.12 1.54 6.52 -39.22 -0.26 1.29 16 20 C -0.19 -2.52 8.49 -39.43 -0.33 -2.85 16 21 C -0.08 -0.94 10.04 -39.61 -0.40 -1.34 16 22 C -0.15 -1.62 10.04 -39.56 -0.40 -2.02 16 23 C -0.08 -0.86 10.04 -39.60 -0.40 -1.26 16 24 C -0.15 -1.68 9.99 -39.43 -0.39 -2.07 16 25 C -0.12 -1.13 10.19 -26.69 -0.27 -1.40 16 26 C -0.16 -1.60 9.03 -26.69 -0.24 -1.84 16 27 H 0.03 0.44 6.77 -51.93 -0.35 0.09 16 28 H 0.07 1.38 6.47 -51.93 -0.34 1.05 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.07 1.32 6.62 -51.93 -0.34 0.98 16 32 H 0.03 0.47 7.14 -51.93 -0.37 0.10 16 33 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 36 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 37 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.40 5.77 6.07 -40.82 -0.25 5.52 16 39 H 0.13 1.82 5.24 -52.48 -0.28 1.54 16 40 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 41 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 42 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 43 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 44 H 0.11 0.84 8.14 -51.93 -0.42 0.41 16 45 H 0.12 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.12 1.23 7.67 -51.93 -0.40 0.83 16 47 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 380.70 15.07 5.74 5.74 Total: -1.00 -30.90 380.70 -9.08 -39.98 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -7.25 Total: 6.52 kcal Atomic # 6 Polarization: -15.54 SS G_CDS: -2.88 Total: -18.42 kcal Atomic # 7 Polarization: -37.28 SS G_CDS: 0.44 Total: -36.84 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: -0.11 Total: -13.17 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.90 -9.08 -39.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421566923.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.502 kcal (2) G-P(sol) polarization free energy of solvation -30.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds