Wall clock time and date at job start Tue Mar 31 2020 11:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46907 * 2 1 4 4 C 1.52997 * 109.47534 * 239.99966 * 2 1 3 5 5 C 1.50701 * 109.47297 * 59.99558 * 4 2 1 6 6 H 1.08004 * 119.99655 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00187 * 180.02562 * 5 4 2 8 8 N 1.31517 * 120.00307 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 120.00108 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46978 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.46848 * 119.99759 * 9 7 5 12 12 H 1.48499 * 109.47103 * 239.99915 * 9 7 5 13 13 C 1.52997 * 109.46968 * 119.99479 * 2 1 3 14 14 N 1.46499 * 109.47551 * 302.95115 * 13 2 1 15 15 C 1.34774 * 120.00139 * 184.45303 * 14 13 2 16 16 O 1.21286 * 120.00079 * 354.94141 * 15 14 13 17 17 C 1.50697 * 119.99924 * 174.94781 * 15 14 13 18 18 O 1.42901 * 115.54758 * 323.54941 * 17 15 14 19 19 C 1.35895 * 117.00677 * 294.36307 * 18 17 15 20 20 C 1.38739 * 120.05417 * 355.24003 * 19 18 17 21 21 C 1.38136 * 119.94659 * 179.77065 * 20 19 18 22 22 C 1.38268 * 120.05679 * 0.50778 * 21 20 19 23 23 C 1.38271 * 120.10908 * 359.74407 * 22 21 20 24 24 C 1.38144 * 120.05418 * 0.02562 * 23 22 21 25 25 C 1.52996 * 117.50421 * 109.22505 * 17 15 14 26 26 C 1.53006 * 117.49986 * 177.88926 * 17 15 14 27 27 H 1.08998 * 109.47317 * 304.99451 * 1 2 3 28 28 H 1.08995 * 109.47063 * 64.99710 * 1 2 3 29 29 H 1.09004 * 109.46606 * 184.99267 * 1 2 3 30 30 H 1.08996 * 109.47213 * 179.97438 * 3 2 1 31 31 H 1.09005 * 109.46797 * 299.99949 * 3 2 1 32 32 H 1.09000 * 109.47170 * 59.99419 * 3 2 1 33 33 H 1.08996 * 109.47317 * 179.97438 * 4 2 1 34 34 H 1.09001 * 109.46737 * 300.00187 * 4 2 1 35 35 H 0.96995 * 120.00534 * 179.97438 * 8 7 5 36 36 H 1.09000 * 109.46992 * 182.95348 * 13 2 1 37 37 H 1.09001 * 109.47040 * 62.95888 * 13 2 1 38 38 H 0.97001 * 119.99613 * 4.45781 * 14 13 2 39 39 H 1.08003 * 120.02663 * 0.02562 * 20 19 18 40 40 H 1.07998 * 119.97513 * 180.25526 * 21 20 19 41 41 H 1.07993 * 119.94713 * 179.72774 * 22 21 20 42 42 H 1.07999 * 119.97432 * 180.02562 * 23 22 21 43 43 H 1.07998 * 120.02771 * 180.02562 * 24 23 22 44 44 H 1.08997 * 117.50166 * 214.99889 * 25 17 15 45 45 H 1.09005 * 117.49448 * 0.02562 * 25 17 15 46 46 H 1.09003 * 117.49810 * 359.96878 * 26 17 15 47 47 H 1.08996 * 117.50324 * 144.96972 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9171 0.8674 -2.3806 7 6 1.8705 -0.4823 -3.7319 8 7 2.6267 -1.5515 -3.8526 9 14 1.2483 0.3986 -5.2572 10 1 0.4236 1.5656 -4.8531 11 1 2.4036 0.8645 -6.0655 12 1 0.4227 -0.5343 -6.0655 13 6 2.0400 -0.7211 1.2493 14 7 1.4945 -0.0728 2.4444 15 6 1.8798 -0.4830 3.6690 16 8 2.6063 -1.4473 3.7847 17 6 1.4080 0.2563 4.8944 18 8 1.2984 1.6743 4.7546 19 6 2.4512 2.3655 4.5545 20 6 3.6718 1.7070 4.5922 21 6 4.8418 2.4110 4.3838 22 6 4.7981 3.7728 4.1481 23 6 3.5833 4.4323 4.1151 24 6 2.4100 3.7320 4.3182 25 6 0.3893 -0.4456 5.7945 26 6 1.8398 -0.2878 6.2577 27 1 -0.3634 0.5893 0.8418 28 1 -0.3633 0.4343 -0.9313 29 1 -0.3633 -1.0238 0.0894 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6765 1.9564 0.8899 33 1 3.1301 -0.7208 -1.2494 34 1 1.6767 -1.7489 -1.2491 35 1 2.8605 -1.8833 -4.7335 36 1 3.1287 -0.6755 1.2762 37 1 1.7206 -1.7630 1.2232 38 1 0.8558 0.6518 2.3543 39 1 3.7068 0.6441 4.7804 40 1 5.7919 1.8981 4.4090 41 1 5.7143 4.3222 3.9897 42 1 3.5517 5.4960 3.9304 43 1 1.4614 4.2475 4.2920 44 1 -0.3645 0.1741 6.2801 45 1 0.0606 -1.4425 5.5006 46 1 2.4647 -1.1808 6.2682 47 1 2.0405 0.4358 7.0478 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000421566923.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:09 Heat of formation + Delta-G solvation = -48.724966 kcal Electronic energy + Delta-G solvation = -27266.123790 eV Core-core repulsion = 23607.091197 eV Total energy + Delta-G solvation = -3659.032593 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.03470 -40.38519 -39.07869 -38.35875 -36.16315 -35.25528 -33.95339 -31.90311 -30.71017 -29.22774 -28.15000 -28.02084 -25.77050 -24.55103 -23.95202 -23.26171 -23.09540 -21.21078 -20.18876 -19.31890 -18.39375 -17.93010 -17.37650 -17.04195 -16.76127 -16.43880 -16.28834 -15.92197 -15.48667 -15.26104 -14.95153 -14.83940 -14.74941 -14.43827 -14.31861 -14.06634 -13.97635 -13.78796 -12.97826 -12.91401 -12.71624 -12.67016 -12.62917 -12.59871 -12.38862 -12.26635 -12.24233 -11.98132 -11.91353 -11.58945 -11.29423 -11.20552 -10.94352 -10.80861 -10.52983 -10.19540 -9.95864 -9.22757 -8.14915 -6.22728 0.37834 0.44726 1.23416 1.41349 1.42553 1.54262 1.73314 1.93811 2.43946 2.72978 2.84392 3.19753 3.43101 3.52923 3.70507 3.88728 3.91549 4.00172 4.02262 4.16835 4.21114 4.29547 4.48136 4.54398 4.58180 4.63459 4.65014 4.69220 4.78792 4.80143 4.90712 5.02504 5.04452 5.06738 5.07381 5.28279 5.32853 5.40288 5.45068 5.48086 5.49058 5.54064 5.59488 5.75768 5.78449 5.88084 6.21602 6.29490 6.45716 6.91919 7.01492 7.45127 8.97840 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014852 B = 0.003542 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.857303 B = 7903.403841 C = 8854.014382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.063 4.063 3 C -0.117 4.117 4 C 0.042 3.958 5 C -0.513 4.513 6 H 0.072 0.928 7 C -0.003 4.003 8 N -0.938 5.938 9 Si 0.958 3.042 10 H -0.257 1.257 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.141 3.859 14 N -0.698 5.698 15 C 0.531 3.469 16 O -0.570 6.570 17 C -0.021 4.021 18 O -0.268 6.268 19 C 0.105 3.895 20 C -0.212 4.212 21 C -0.096 4.096 22 C -0.157 4.157 23 C -0.083 4.083 24 C -0.155 4.155 25 C -0.101 4.101 26 C -0.155 4.155 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.043 0.957 30 H 0.033 0.967 31 H 0.058 0.942 32 H 0.059 0.941 33 H -0.015 1.015 34 H -0.011 1.011 35 H 0.260 0.740 36 H 0.046 0.954 37 H 0.052 0.948 38 H 0.412 0.588 39 H 0.115 0.885 40 H 0.130 0.870 41 H 0.145 0.855 42 H 0.158 0.842 43 H 0.146 0.854 44 H 0.142 0.858 45 H 0.120 0.880 46 H 0.108 0.892 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.154 11.269 21.959 24.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.063 4.063 3 C -0.174 4.174 4 C 0.004 3.996 5 C -0.551 4.551 6 H 0.090 0.910 7 C -0.200 4.200 8 N -0.579 5.579 9 Si 0.783 3.217 10 H -0.181 1.181 11 H -0.210 1.210 12 H -0.210 1.210 13 C 0.017 3.983 14 N -0.349 5.349 15 C 0.317 3.683 16 O -0.450 6.450 17 C -0.063 4.063 18 O -0.182 6.182 19 C 0.061 3.939 20 C -0.231 4.231 21 C -0.114 4.114 22 C -0.175 4.175 23 C -0.101 4.101 24 C -0.174 4.174 25 C -0.138 4.138 26 C -0.192 4.192 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.004 0.996 34 H 0.007 0.993 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.249 0.751 39 H 0.133 0.867 40 H 0.148 0.852 41 H 0.163 0.837 42 H 0.175 0.825 43 H 0.164 0.836 44 H 0.160 0.840 45 H 0.138 0.862 46 H 0.127 0.873 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.762 10.579 21.903 24.480 hybrid contribution 0.199 -0.206 -1.407 1.436 sum -2.563 10.374 20.495 23.114 Atomic orbital electron populations 1.21712 0.93486 1.01083 1.01787 1.20697 0.96802 0.96034 0.92801 1.21642 0.99639 0.94888 1.01230 1.18949 0.94241 0.94270 0.92122 1.21599 1.30438 1.12051 0.91036 0.90989 1.25925 0.95609 0.95832 1.02650 1.70123 1.38762 1.24972 1.24060 0.85500 0.78072 0.78856 0.79256 1.18076 1.21042 1.20953 1.21307 0.97228 0.96035 0.83703 1.45933 1.45922 1.38186 1.04831 1.20127 0.79738 0.83832 0.84595 1.90707 1.38485 1.29096 1.86752 1.22048 1.13121 0.79912 0.91221 1.86100 1.28883 1.16345 1.86869 1.19264 0.84882 0.92374 0.97396 1.21421 0.93157 1.00437 1.08048 1.21222 0.97831 0.95160 0.97228 1.21415 0.99367 0.94212 1.02536 1.21347 0.91043 1.01201 0.96467 1.20724 1.00769 0.90598 1.05262 1.23565 0.93328 1.01231 0.95658 1.23658 0.98668 1.03782 0.93116 0.91665 0.92269 0.93827 0.94734 0.92335 0.92248 0.99632 0.99293 0.93146 0.93533 0.93009 0.75076 0.86735 0.85158 0.83725 0.82467 0.83595 0.84042 0.86158 0.87342 0.85486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.24 8.02 71.98 0.58 -3.67 16 2 C -0.06 -2.45 0.54 -52.18 -0.03 -2.48 16 3 C -0.12 -4.19 8.08 71.98 0.58 -3.61 16 4 C 0.04 2.14 4.04 29.85 0.12 2.26 16 5 C -0.51 -27.61 7.59 25.60 0.19 -27.42 16 6 H 0.07 3.64 5.69 -2.91 -0.02 3.63 16 7 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 8 N -0.94 -57.03 13.29 21.45 0.28 -56.75 16 9 Si 0.96 43.61 29.54 68.60 2.03 45.64 16 10 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16 11 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 12 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 13 C 0.14 5.23 4.57 86.38 0.39 5.62 16 14 N -0.70 -21.18 4.93 -463.07 -2.28 -23.46 16 15 C 0.53 16.13 5.65 87.66 0.50 16.63 16 16 O -0.57 -21.24 16.10 -3.05 -0.05 -21.29 16 17 C -0.02 -0.47 1.67 -11.54 -0.02 -0.49 16 18 O -0.27 -6.16 10.08 -92.37 -0.93 -7.09 16 19 C 0.11 2.51 6.52 22.51 0.15 2.66 16 20 C -0.21 -5.46 8.49 22.37 0.19 -5.27 16 21 C -0.10 -2.20 10.04 22.25 0.22 -1.98 16 22 C -0.16 -2.99 10.04 22.28 0.22 -2.77 16 23 C -0.08 -1.45 10.04 22.26 0.22 -1.23 16 24 C -0.16 -3.12 9.99 22.36 0.22 -2.90 16 25 C -0.10 -1.58 10.19 30.62 0.31 -1.27 16 26 C -0.15 -2.83 9.03 30.62 0.28 -2.55 16 27 H 0.06 1.77 6.77 -2.39 -0.02 1.75 16 28 H 0.06 2.19 6.47 -2.39 -0.02 2.18 16 29 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 30 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.06 2.21 6.62 -2.38 -0.02 2.19 16 32 H 0.06 1.77 7.14 -2.39 -0.02 1.75 16 33 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 34 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 35 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 36 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.41 10.97 6.07 -92.71 -0.56 10.41 16 39 H 0.11 3.27 5.24 -2.91 -0.02 3.26 16 40 H 0.13 2.64 8.06 -2.91 -0.02 2.61 16 41 H 0.14 2.03 8.06 -2.91 -0.02 2.00 16 42 H 0.16 1.78 8.06 -2.91 -0.02 1.76 16 43 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 44 H 0.14 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.12 1.82 8.14 -2.38 -0.02 1.80 16 46 H 0.11 2.22 7.67 -2.39 -0.02 2.20 16 47 H 0.13 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -69.02 380.70 4.05 -64.97 By element: Atomic # 1 Polarization: 25.75 SS G_CDS: 0.40 Total: 26.16 kcal Atomic # 6 Polarization: -32.77 SS G_CDS: 4.60 Total: -28.17 kcal Atomic # 7 Polarization: -78.21 SS G_CDS: -2.00 Total: -80.21 kcal Atomic # 8 Polarization: -27.40 SS G_CDS: -0.98 Total: -28.38 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -69.02 4.05 -64.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421566923.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.242 kcal (2) G-P(sol) polarization free energy of solvation -69.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds