Wall clock time and date at job start Tue Mar 31 2020 11:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47128 * 2 1 4 4 C 1.52996 * 109.46928 * 120.00462 * 2 1 3 5 5 C 1.50700 * 109.47003 * 299.99634 * 4 2 1 6 6 H 1.07997 * 120.00312 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99989 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99995 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 119.99806 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47290 * 89.99824 * 9 7 5 11 11 H 1.48498 * 109.46816 * 209.99985 * 9 7 5 12 12 H 1.48498 * 109.47142 * 329.99644 * 9 7 5 13 13 C 1.53000 * 109.46799 * 240.00138 * 2 1 3 14 14 N 1.46904 * 109.47548 * 54.59172 * 13 2 1 15 15 C 1.46846 * 111.00255 * 210.98929 * 14 13 2 16 16 C 1.53038 * 109.52175 * 174.15507 * 15 14 13 17 17 C 1.53124 * 109.27587 * 59.18180 * 16 15 14 18 18 C 1.53001 * 109.57284 * 182.40756 * 17 16 15 19 19 S 1.81403 * 109.46772 * 294.71290 * 18 17 16 20 20 C 1.81407 * 101.91994 * 180.02562 * 19 18 17 21 21 O 1.42095 * 108.57851 * 294.48694 * 19 18 17 22 22 O 1.42095 * 108.57875 * 65.51526 * 19 18 17 23 23 C 1.53116 * 109.16044 * 302.34077 * 17 16 15 24 24 C 1.46846 * 111.00155 * 86.77464 * 14 13 2 25 25 H 1.08998 * 109.46864 * 305.51643 * 1 2 3 26 26 H 1.09003 * 109.47013 * 65.51179 * 1 2 3 27 27 H 1.08997 * 109.47353 * 185.51270 * 1 2 3 28 28 H 1.09002 * 109.47276 * 193.21781 * 3 2 1 29 29 H 1.09000 * 109.47701 * 313.21572 * 3 2 1 30 30 H 1.08996 * 109.47112 * 73.21741 * 3 2 1 31 31 H 1.08999 * 109.46553 * 179.97438 * 4 2 1 32 32 H 1.08992 * 109.47391 * 60.00094 * 4 2 1 33 33 H 0.97000 * 119.99889 * 179.97438 * 8 7 5 34 34 H 1.08996 * 109.47212 * 174.59116 * 13 2 1 35 35 H 1.09003 * 109.47315 * 294.59188 * 13 2 1 36 36 H 1.08994 * 109.46086 * 294.17624 * 15 14 13 37 37 H 1.09003 * 109.46105 * 54.14593 * 15 14 13 38 38 H 1.08996 * 109.50291 * 299.24025 * 16 15 14 39 39 H 1.08996 * 109.49914 * 179.11845 * 16 15 14 40 40 H 1.08998 * 109.52374 * 62.24973 * 17 16 15 41 41 H 1.08996 * 109.47375 * 54.71243 * 18 17 16 42 42 H 1.08994 * 109.47096 * 174.71460 * 18 17 16 43 43 H 1.08998 * 109.47198 * 59.99815 * 20 19 18 44 44 H 1.08994 * 109.47102 * 180.02562 * 20 19 18 45 45 H 1.09001 * 109.46742 * 300.00012 * 20 19 18 46 46 H 1.08998 * 109.50609 * 297.71681 * 23 17 16 47 47 H 1.09000 * 109.50304 * 177.59767 * 23 17 16 48 48 H 1.08998 * 109.46215 * 305.86274 * 24 14 13 49 49 H 1.09007 * 109.45939 * 65.83882 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.5376 -0.0109 2.4797 6 1 0.9172 0.8674 2.3807 7 6 1.8711 -0.4818 3.7319 8 7 1.4332 0.1385 4.8058 9 14 2.9462 -1.9998 3.9032 10 1 4.3736 -1.5930 3.9485 11 1 2.5955 -2.7158 5.1560 12 1 2.7239 -2.8974 2.7413 13 6 2.0399 -0.7212 -1.2493 14 7 1.4466 -0.1082 -2.4452 15 6 1.2749 -1.0997 -3.5147 16 6 0.5244 -0.4630 -4.6867 17 6 1.3196 0.7395 -5.2027 18 6 0.5464 1.4174 -6.3356 19 16 0.4308 0.2870 -7.7496 20 6 -0.5039 1.2789 -8.9469 21 8 1.7376 0.0705 -8.2641 22 8 -0.3602 -0.8312 -7.3718 23 6 1.5261 1.7344 -4.0573 24 6 2.2475 1.0340 -2.9036 25 1 -0.3633 0.5970 0.8365 26 1 -0.3633 0.4260 -0.9352 27 1 -0.3634 -1.0229 0.0987 28 1 3.1044 1.4516 -0.2350 29 1 1.4977 2.0197 -0.7489 30 1 1.8814 1.8839 0.9839 31 1 3.1299 -0.7217 1.2489 32 1 1.6767 -1.7489 1.2491 33 1 1.6675 -0.1930 5.6867 34 1 3.1256 -0.6381 -1.2991 35 1 1.7578 -1.7731 -1.2022 36 1 2.2529 -1.4422 -3.8528 37 1 0.7042 -1.9476 -3.1358 38 1 -0.4591 -0.1326 -4.3526 39 1 0.4109 -1.1946 -5.4866 40 1 2.2884 0.4039 -5.5728 41 1 -0.4559 1.6711 -5.9904 42 1 1.0672 2.3258 -6.6382 43 1 0.0482 2.1913 -9.1726 44 1 -0.6466 0.7044 -9.8620 45 1 -1.4753 1.5370 -8.5251 46 1 0.5584 2.0994 -3.7133 47 1 2.1283 2.5728 -4.4076 48 1 2.3834 1.7358 -2.0807 49 1 3.2210 0.6814 -3.2447 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430136906.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:22 Heat of formation + Delta-G solvation = -79.160586 kcal Electronic energy + Delta-G solvation = -25919.071248 eV Core-core repulsion = 22394.162819 eV Total energy + Delta-G solvation = -3524.908429 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.49449 -37.34303 -36.91672 -36.32005 -34.02982 -32.12421 -30.95063 -30.21589 -28.87923 -27.51373 -26.40755 -25.30946 -23.09500 -22.66627 -21.55753 -19.84114 -19.20483 -17.83681 -17.08951 -16.72934 -16.47258 -16.46851 -15.59694 -14.99247 -14.70600 -14.50831 -14.13182 -13.87920 -13.82771 -13.67569 -13.50818 -13.14312 -12.84098 -12.77691 -12.62533 -12.34323 -12.29109 -12.25847 -12.09878 -11.66958 -11.51592 -11.41117 -11.23955 -11.09085 -10.89547 -10.77515 -10.70948 -10.51283 -10.43527 -10.32293 -10.00116 -9.74269 -9.61146 -9.12594 -8.89266 -8.46689 -7.96636 -5.97254 -3.92847 -0.41623 2.35336 3.23170 3.34154 3.41989 3.45881 3.58896 4.06560 4.19966 4.22462 4.31541 4.50985 4.51527 4.62775 4.88602 5.11084 5.14769 5.17727 5.20958 5.35887 5.38303 5.52807 5.54226 5.57933 5.70161 5.79222 5.84715 5.94712 6.02376 6.04776 6.09388 6.17998 6.28968 6.30507 6.51439 6.67738 6.75338 6.87698 7.15538 7.22570 7.24644 7.33305 7.41464 7.44365 7.56756 7.89348 8.63434 9.09192 9.66250 11.15904 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.036209 B = 0.002554 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.096799 B =10962.652697 C =11146.421844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.042 4.042 3 C -0.134 4.134 4 C -0.006 4.006 5 C -0.504 4.504 6 H 0.078 0.922 7 C 0.063 3.937 8 N -0.907 5.907 9 Si 0.875 3.125 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.267 1.267 13 C 0.062 3.938 14 N -0.529 5.529 15 C 0.056 3.944 16 C -0.139 4.139 17 C -0.077 4.077 18 C -0.601 4.601 19 S 2.415 3.585 20 C -0.660 4.660 21 O -0.942 6.942 22 O -0.933 6.933 23 C -0.101 4.101 24 C 0.036 3.964 25 H 0.054 0.946 26 H 0.049 0.951 27 H 0.036 0.964 28 H 0.034 0.966 29 H 0.045 0.955 30 H 0.071 0.929 31 H 0.007 0.993 32 H 0.014 0.986 33 H 0.261 0.739 34 H 0.033 0.967 35 H 0.064 0.936 36 H 0.029 0.971 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.135 0.865 42 H 0.131 0.869 43 H 0.127 0.873 44 H 0.128 0.872 45 H 0.128 0.872 46 H 0.076 0.924 47 H 0.065 0.935 48 H 0.100 0.900 49 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.633 4.397 -27.638 28.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.042 4.042 3 C -0.191 4.191 4 C -0.044 4.044 5 C -0.542 4.542 6 H 0.096 0.904 7 C -0.137 4.137 8 N -0.546 5.546 9 Si 0.703 3.297 10 H -0.206 1.206 11 H -0.216 1.216 12 H -0.191 1.191 13 C -0.065 4.065 14 N -0.253 5.253 15 C -0.072 4.072 16 C -0.176 4.176 17 C -0.096 4.096 18 C -0.731 4.731 19 S 2.598 3.402 20 C -0.809 4.809 21 O -0.939 6.939 22 O -0.930 6.930 23 C -0.140 4.140 24 C -0.091 4.091 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.089 0.911 31 H 0.025 0.975 32 H 0.032 0.968 33 H 0.071 0.929 34 H 0.051 0.949 35 H 0.082 0.918 36 H 0.047 0.953 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.104 0.896 40 H 0.099 0.901 41 H 0.153 0.847 42 H 0.150 0.850 43 H 0.145 0.855 44 H 0.146 0.854 45 H 0.147 0.853 46 H 0.095 0.905 47 H 0.084 0.916 48 H 0.118 0.882 49 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -2.773 3.695 -27.451 27.837 hybrid contribution 1.096 -0.246 0.039 1.124 sum -1.676 3.449 -27.412 27.679 Atomic orbital electron populations 1.21576 0.94610 1.00601 1.00445 1.20342 0.96168 0.94976 0.92731 1.21991 0.98380 0.96647 1.02089 1.19651 0.95414 0.95815 0.93495 1.21135 1.31357 1.13068 0.88655 0.90411 1.25023 0.95901 0.96693 0.96055 1.69910 1.46296 1.40626 0.97802 0.86849 0.81110 0.84221 0.77478 1.20557 1.21606 1.19141 1.22360 0.96164 0.98030 0.89955 1.61901 1.50099 1.08411 1.04890 1.22080 0.98596 0.94868 0.91669 1.22113 1.00013 0.96821 0.98687 1.20983 0.98371 0.96530 0.93738 1.30359 1.10455 1.15773 1.16474 1.08025 0.76176 0.77912 0.78126 1.30300 1.15731 1.16498 1.18328 1.93602 1.37154 1.84498 1.78667 1.93602 1.71229 1.46362 1.81852 1.21595 1.01908 0.96721 0.93792 1.22558 0.93785 0.94611 0.98182 0.92662 0.93196 0.94478 0.94652 0.93661 0.91053 0.97507 0.96815 0.92940 0.94869 0.91756 0.95323 0.90337 0.90021 0.89603 0.90083 0.84659 0.85022 0.85471 0.85373 0.85288 0.90545 0.91594 0.88231 0.95481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.20 7.95 37.16 0.30 -1.91 16 2 C -0.04 -0.80 0.61 -154.51 -0.09 -0.89 16 3 C -0.13 -2.46 6.87 37.16 0.26 -2.20 16 4 C -0.01 -0.14 3.11 -27.88 -0.09 -0.23 16 5 C -0.50 -13.92 8.08 -34.44 -0.28 -14.20 16 6 H 0.08 2.29 6.03 -52.49 -0.32 1.98 16 7 C 0.06 1.84 5.47 -17.82 -0.10 1.74 16 8 N -0.91 -27.86 13.96 55.43 0.77 -27.09 16 9 Si 0.88 21.91 27.47 -169.99 -4.67 17.24 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 12 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 13 C 0.06 1.02 4.24 -3.82 -0.02 1.01 16 14 N -0.53 -7.37 3.40 -234.67 -0.80 -8.17 16 15 C 0.06 0.70 5.36 -3.83 -0.02 0.68 16 16 C -0.14 -1.48 4.94 -26.65 -0.13 -1.62 16 17 C -0.08 -0.69 2.25 -90.50 -0.20 -0.89 16 18 C -0.60 -3.22 5.27 37.16 0.20 -3.02 16 19 S 2.41 15.92 5.16 -107.50 -0.55 15.37 16 20 C -0.66 -1.95 10.62 101.05 1.07 -0.88 16 21 O -0.94 -9.98 18.10 -57.83 -1.05 -11.03 16 22 O -0.93 -9.49 15.53 -57.83 -0.90 -10.39 16 23 C -0.10 -0.97 5.38 -26.65 -0.14 -1.12 16 24 C 0.04 0.45 4.93 -3.83 -0.02 0.43 16 25 H 0.05 1.17 6.81 -51.93 -0.35 0.82 16 26 H 0.05 0.86 7.27 -51.93 -0.38 0.48 16 27 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.03 0.60 7.68 -51.93 -0.40 0.21 16 29 H 0.04 0.73 6.29 -51.93 -0.33 0.40 16 30 H 0.07 1.51 6.30 -51.93 -0.33 1.18 16 31 H 0.01 0.16 7.57 -51.93 -0.39 -0.23 16 32 H 0.01 0.33 7.20 -51.93 -0.37 -0.05 16 33 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 34 H 0.03 0.54 7.77 -51.93 -0.40 0.14 16 35 H 0.06 1.06 7.62 -51.93 -0.40 0.66 16 36 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.08 0.99 7.90 -51.93 -0.41 0.58 16 38 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.09 0.93 5.59 -51.93 -0.29 0.64 16 40 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.14 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.13 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.13 0.15 8.14 -51.93 -0.42 -0.27 16 44 H 0.13 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.13 0.17 8.14 -51.92 -0.42 -0.25 16 46 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.10 1.31 4.16 -51.93 -0.22 1.09 16 49 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 373.62 15.07 5.63 5.63 Total: -1.00 -35.42 373.62 -9.65 -45.08 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -8.82 Total: -3.55 kcal Atomic # 6 Polarization: -23.82 SS G_CDS: 0.73 Total: -23.09 kcal Atomic # 7 Polarization: -35.24 SS G_CDS: -0.02 Total: -35.26 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -1.94 Total: -21.42 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.67 Total: 17.24 kcal Atomic # 16 Polarization: 15.92 SS G_CDS: -0.55 Total: 15.37 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.42 -9.65 -45.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430136906.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.085 kcal (2) G-P(sol) polarization free energy of solvation -35.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds