Wall clock time and date at job start Tue Mar 31 2020 11:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47128 * 2 1 4 4 C 1.52996 * 109.46928 * 120.00462 * 2 1 3 5 5 C 1.50700 * 109.47003 * 299.99634 * 4 2 1 6 6 H 1.07997 * 120.00312 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99989 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99995 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 119.99806 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47290 * 89.99824 * 9 7 5 11 11 H 1.48498 * 109.46816 * 209.99985 * 9 7 5 12 12 H 1.48498 * 109.47142 * 329.99644 * 9 7 5 13 13 C 1.53000 * 109.46799 * 240.00138 * 2 1 3 14 14 N 1.46904 * 109.47548 * 54.59172 * 13 2 1 15 15 C 1.46846 * 111.00255 * 210.98929 * 14 13 2 16 16 C 1.53038 * 109.52175 * 174.15507 * 15 14 13 17 17 C 1.53124 * 109.27587 * 59.18180 * 16 15 14 18 18 C 1.53001 * 109.57284 * 182.40756 * 17 16 15 19 19 S 1.81403 * 109.46772 * 294.71290 * 18 17 16 20 20 C 1.81407 * 101.91994 * 180.02562 * 19 18 17 21 21 O 1.42095 * 108.57851 * 294.48694 * 19 18 17 22 22 O 1.42095 * 108.57875 * 65.51526 * 19 18 17 23 23 C 1.53116 * 109.16044 * 302.34077 * 17 16 15 24 24 C 1.46846 * 111.00155 * 86.77464 * 14 13 2 25 25 H 1.08998 * 109.46864 * 305.51643 * 1 2 3 26 26 H 1.09003 * 109.47013 * 65.51179 * 1 2 3 27 27 H 1.08997 * 109.47353 * 185.51270 * 1 2 3 28 28 H 1.09002 * 109.47276 * 193.21781 * 3 2 1 29 29 H 1.09000 * 109.47701 * 313.21572 * 3 2 1 30 30 H 1.08996 * 109.47112 * 73.21741 * 3 2 1 31 31 H 1.08999 * 109.46553 * 179.97438 * 4 2 1 32 32 H 1.08992 * 109.47391 * 60.00094 * 4 2 1 33 33 H 0.97000 * 119.99889 * 179.97438 * 8 7 5 34 34 H 1.08996 * 109.47212 * 174.59116 * 13 2 1 35 35 H 1.09003 * 109.47315 * 294.59188 * 13 2 1 36 36 H 1.08994 * 109.46086 * 294.17624 * 15 14 13 37 37 H 1.09003 * 109.46105 * 54.14593 * 15 14 13 38 38 H 1.08996 * 109.50291 * 299.24025 * 16 15 14 39 39 H 1.08996 * 109.49914 * 179.11845 * 16 15 14 40 40 H 1.08998 * 109.52374 * 62.24973 * 17 16 15 41 41 H 1.08996 * 109.47375 * 54.71243 * 18 17 16 42 42 H 1.08994 * 109.47096 * 174.71460 * 18 17 16 43 43 H 1.08998 * 109.47198 * 59.99815 * 20 19 18 44 44 H 1.08994 * 109.47102 * 180.02562 * 20 19 18 45 45 H 1.09001 * 109.46742 * 300.00012 * 20 19 18 46 46 H 1.08998 * 109.50609 * 297.71681 * 23 17 16 47 47 H 1.09000 * 109.50304 * 177.59767 * 23 17 16 48 48 H 1.08998 * 109.46215 * 305.86274 * 24 14 13 49 49 H 1.09007 * 109.45939 * 65.83882 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.5376 -0.0109 2.4797 6 1 0.9172 0.8674 2.3807 7 6 1.8711 -0.4818 3.7319 8 7 1.4332 0.1385 4.8058 9 14 2.9462 -1.9998 3.9032 10 1 4.3736 -1.5930 3.9485 11 1 2.5955 -2.7158 5.1560 12 1 2.7239 -2.8974 2.7413 13 6 2.0399 -0.7212 -1.2493 14 7 1.4466 -0.1082 -2.4452 15 6 1.2749 -1.0997 -3.5147 16 6 0.5244 -0.4630 -4.6867 17 6 1.3196 0.7395 -5.2027 18 6 0.5464 1.4174 -6.3356 19 16 0.4308 0.2870 -7.7496 20 6 -0.5039 1.2789 -8.9469 21 8 1.7376 0.0705 -8.2641 22 8 -0.3602 -0.8312 -7.3718 23 6 1.5261 1.7344 -4.0573 24 6 2.2475 1.0340 -2.9036 25 1 -0.3633 0.5970 0.8365 26 1 -0.3633 0.4260 -0.9352 27 1 -0.3634 -1.0229 0.0987 28 1 3.1044 1.4516 -0.2350 29 1 1.4977 2.0197 -0.7489 30 1 1.8814 1.8839 0.9839 31 1 3.1299 -0.7217 1.2489 32 1 1.6767 -1.7489 1.2491 33 1 1.6675 -0.1930 5.6867 34 1 3.1256 -0.6381 -1.2991 35 1 1.7578 -1.7731 -1.2022 36 1 2.2529 -1.4422 -3.8528 37 1 0.7042 -1.9476 -3.1358 38 1 -0.4591 -0.1326 -4.3526 39 1 0.4109 -1.1946 -5.4866 40 1 2.2884 0.4039 -5.5728 41 1 -0.4559 1.6711 -5.9904 42 1 1.0672 2.3258 -6.6382 43 1 0.0482 2.1913 -9.1726 44 1 -0.6466 0.7044 -9.8620 45 1 -1.4753 1.5370 -8.5251 46 1 0.5584 2.0994 -3.7133 47 1 2.1283 2.5728 -4.4076 48 1 2.3834 1.7358 -2.0807 49 1 3.2210 0.6814 -3.2447 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430136906.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:21 Heat of formation + Delta-G solvation = -104.235539 kcal Electronic energy + Delta-G solvation = -25920.158580 eV Core-core repulsion = 22394.162819 eV Total energy + Delta-G solvation = -3525.995761 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.53960 -38.24257 -37.91288 -36.95671 -35.26914 -34.07674 -31.85809 -30.58787 -29.95020 -29.14093 -27.92255 -26.55528 -24.28421 -23.98583 -22.74009 -20.66926 -19.71839 -19.44720 -18.84908 -17.62733 -17.11382 -16.98507 -16.60407 -16.18935 -16.05547 -15.76132 -15.30188 -15.03127 -14.87840 -14.36133 -14.29593 -14.15203 -13.98332 -13.87631 -13.78612 -13.56275 -13.34237 -13.01149 -12.97357 -12.91981 -12.77210 -12.49240 -12.42004 -12.24368 -12.14281 -12.03000 -11.89455 -11.87267 -11.76103 -11.61918 -11.31570 -11.26955 -11.02392 -10.86675 -10.68895 -10.52380 -9.10352 -8.20931 -6.20427 -0.85180 1.35065 1.37289 1.48245 1.96099 2.39800 2.78992 3.00990 3.14057 3.19089 3.58419 3.71301 3.88684 4.07785 4.13876 4.20191 4.21508 4.31872 4.34467 4.41296 4.46968 4.52391 4.63011 4.69295 4.72933 4.80732 4.82630 4.94482 4.97838 5.00255 5.01578 5.05004 5.08897 5.15402 5.21863 5.24599 5.28935 5.42830 5.47052 5.49155 5.59809 5.67477 5.80712 5.86536 6.21604 6.32795 6.44683 6.86666 7.41677 8.95257 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.036209 B = 0.002554 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.096799 B =10962.652697 C =11146.421844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.041 4.041 3 C -0.124 4.124 4 C -0.005 4.005 5 C -0.499 4.499 6 H 0.046 0.954 7 C 0.000 4.000 8 N -0.954 5.954 9 Si 0.939 3.061 10 H -0.271 1.271 11 H -0.288 1.288 12 H -0.252 1.252 13 C 0.071 3.929 14 N -0.531 5.531 15 C 0.053 3.947 16 C -0.137 4.137 17 C -0.082 4.082 18 C -0.591 4.591 19 S 2.408 3.592 20 C -0.640 4.640 21 O -0.993 6.993 22 O -0.980 6.980 23 C -0.096 4.096 24 C 0.030 3.970 25 H 0.025 0.975 26 H 0.072 0.928 27 H 0.030 0.970 28 H 0.045 0.955 29 H 0.069 0.931 30 H 0.034 0.966 31 H 0.009 0.991 32 H 0.010 0.990 33 H 0.262 0.738 34 H 0.035 0.965 35 H 0.062 0.938 36 H 0.027 0.973 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.161 0.839 42 H 0.165 0.835 43 H 0.153 0.847 44 H 0.132 0.868 45 H 0.153 0.847 46 H 0.079 0.921 47 H 0.089 0.911 48 H 0.092 0.908 49 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.598 5.247 -30.477 31.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.042 4.042 3 C -0.181 4.181 4 C -0.043 4.043 5 C -0.537 4.537 6 H 0.064 0.936 7 C -0.195 4.195 8 N -0.596 5.596 9 Si 0.764 3.236 10 H -0.196 1.196 11 H -0.215 1.215 12 H -0.175 1.175 13 C -0.057 4.057 14 N -0.255 5.255 15 C -0.075 4.075 16 C -0.175 4.175 17 C -0.102 4.102 18 C -0.721 4.721 19 S 2.597 3.403 20 C -0.792 4.792 21 O -0.990 6.990 22 O -0.977 6.977 23 C -0.135 4.135 24 C -0.097 4.097 25 H 0.044 0.956 26 H 0.090 0.910 27 H 0.050 0.950 28 H 0.064 0.936 29 H 0.088 0.912 30 H 0.053 0.947 31 H 0.027 0.973 32 H 0.029 0.971 33 H 0.071 0.929 34 H 0.053 0.947 35 H 0.080 0.920 36 H 0.046 0.954 37 H 0.091 0.909 38 H 0.102 0.898 39 H 0.100 0.900 40 H 0.092 0.908 41 H 0.179 0.821 42 H 0.183 0.817 43 H 0.171 0.829 44 H 0.151 0.849 45 H 0.172 0.828 46 H 0.098 0.902 47 H 0.107 0.893 48 H 0.110 0.890 49 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -2.716 4.512 -30.305 30.759 hybrid contribution 1.006 -0.398 0.874 1.391 sum -1.711 4.113 -29.431 29.766 Atomic orbital electron populations 1.21469 0.94663 0.99788 1.00260 1.20274 0.96059 0.95406 0.92422 1.21885 0.99437 0.96069 1.00710 1.19622 0.95355 0.95521 0.93761 1.21408 1.29969 1.11990 0.90362 0.93621 1.25907 0.97689 1.00091 0.95829 1.70061 1.48420 1.42753 0.98402 0.85818 0.79393 0.80514 0.77852 1.19621 1.21454 1.17531 1.22107 0.96175 0.97563 0.89822 1.61841 1.50127 1.08987 1.04593 1.22134 0.98799 0.94668 0.91901 1.22096 1.00098 0.97634 0.97692 1.20964 0.98402 0.95957 0.94843 1.30251 1.11895 1.15913 1.14063 1.07791 0.75215 0.78276 0.78972 1.30101 1.16209 1.16356 1.16545 1.93540 1.39938 1.85826 1.79706 1.93543 1.71619 1.49617 1.82947 1.21587 1.02076 0.97087 0.92759 1.22645 0.94130 0.93885 0.99066 0.95616 0.90958 0.95035 0.93593 0.91193 0.94700 0.97274 0.97139 0.92930 0.94709 0.91970 0.95431 0.90917 0.89808 0.90036 0.90803 0.82122 0.81706 0.82860 0.84947 0.82837 0.90242 0.89271 0.89023 0.95532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.00 7.95 71.98 0.57 -3.42 16 2 C -0.04 -1.56 0.61 -52.18 -0.03 -1.59 16 3 C -0.12 -4.49 6.87 71.98 0.49 -3.99 16 4 C 0.00 -0.22 3.11 29.85 0.09 -0.13 16 5 C -0.50 -28.29 8.08 25.60 0.21 -28.08 16 6 H 0.05 2.83 6.03 -2.91 -0.02 2.81 16 7 C 0.00 0.03 5.47 84.66 0.46 0.49 16 8 N -0.95 -60.42 13.96 21.45 0.30 -60.12 16 9 Si 0.94 45.38 27.47 68.60 1.88 47.27 16 10 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 11 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 12 H -0.25 -11.42 6.54 99.48 0.65 -10.77 16 13 C 0.07 2.25 4.24 86.30 0.37 2.62 16 14 N -0.53 -13.93 3.40 -896.35 -3.04 -16.97 16 15 C 0.05 1.27 5.36 86.33 0.46 1.73 16 16 C -0.14 -2.74 4.94 30.65 0.15 -2.59 16 17 C -0.08 -1.27 2.25 -10.71 -0.02 -1.29 16 18 C -0.59 -4.14 5.27 71.98 0.38 -3.76 16 19 S 2.41 27.38 5.16 -56.49 -0.29 27.09 16 20 C -0.64 -1.26 10.62 113.37 1.20 -0.06 16 21 O -0.99 -20.43 18.10 -127.37 -2.30 -22.73 16 22 O -0.98 -19.35 15.53 -127.37 -1.98 -21.33 16 23 C -0.10 -1.53 5.38 30.65 0.16 -1.37 16 24 C 0.03 0.68 4.93 86.33 0.43 1.10 16 25 H 0.02 1.10 6.81 -2.39 -0.02 1.08 16 26 H 0.07 2.41 7.27 -2.39 -0.02 2.39 16 27 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.05 1.53 7.68 -2.39 -0.02 1.51 16 29 H 0.07 2.16 6.29 -2.39 -0.02 2.14 16 30 H 0.03 1.50 6.30 -2.39 -0.02 1.48 16 31 H 0.01 0.42 7.57 -2.39 -0.02 0.40 16 32 H 0.01 0.49 7.20 -2.39 -0.02 0.47 16 33 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 34 H 0.03 1.09 7.77 -2.39 -0.02 1.07 16 35 H 0.06 1.98 7.62 -2.39 -0.02 1.96 16 36 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.07 1.79 7.90 -2.39 -0.02 1.77 16 38 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.08 1.73 5.59 -2.39 -0.01 1.72 16 40 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.16 0.36 8.14 -2.39 -0.02 0.34 16 42 H 0.17 0.10 8.14 -2.39 -0.02 0.08 16 43 H 0.15 -0.41 8.14 -2.39 -0.02 -0.43 16 44 H 0.13 0.29 8.14 -2.39 -0.02 0.27 16 45 H 0.15 -0.36 8.14 -2.39 -0.02 -0.38 16 46 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 47 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 48 H 0.09 2.19 4.16 -2.39 -0.01 2.18 16 49 H 0.03 0.60 8.14 -2.38 -0.02 0.58 16 Total: -1.00 -80.05 373.62 0.34 -79.71 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: 0.85 Total: 7.42 kcal Atomic # 6 Polarization: -45.26 SS G_CDS: 4.93 Total: -40.33 kcal Atomic # 7 Polarization: -74.34 SS G_CDS: -2.74 Total: -77.09 kcal Atomic # 8 Polarization: -39.78 SS G_CDS: -4.28 Total: -44.06 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 1.88 Total: 47.27 kcal Atomic # 16 Polarization: 27.38 SS G_CDS: -0.29 Total: 27.09 kcal Total: -80.05 0.34 -79.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430136906.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.528 kcal (2) G-P(sol) polarization free energy of solvation -80.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds