Wall clock time and date at job start Tue Mar 31 2020 11:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53013 * 1 3 3 C 1.52993 * 109.46839 * 2 1 4 4 C 1.52994 * 109.46982 * 239.99934 * 2 1 3 5 5 C 1.50706 * 109.47161 * 60.00035 * 4 2 1 6 6 H 1.07999 * 119.99903 * 0.02562 * 5 4 2 7 7 C 1.37875 * 119.99796 * 179.97438 * 5 4 2 8 8 N 1.31513 * 120.00064 * 180.02562 * 7 5 4 9 9 Si 1.86806 * 120.00160 * 0.02562 * 7 5 4 10 10 H 1.48505 * 109.46785 * 89.99943 * 9 7 5 11 11 H 1.48500 * 109.47064 * 209.99769 * 9 7 5 12 12 H 1.48493 * 109.47111 * 330.00317 * 9 7 5 13 13 C 1.53000 * 109.46646 * 120.00023 * 2 1 3 14 14 N 1.46903 * 109.46965 * 293.67660 * 13 2 1 15 15 C 1.44269 * 110.99585 * 77.53967 * 14 13 2 16 16 C 1.54065 * 111.98126 * 219.30495 * 15 14 13 17 17 C 1.54299 * 112.28961 * 318.91551 * 16 15 14 18 18 C 1.50462 * 113.02934 * 318.30421 * 17 16 15 19 19 C 1.54502 * 108.85551 * 92.15588 * 18 17 16 20 20 H 1.08997 * 109.06030 * 43.34330 * 19 18 17 21 21 S 1.81401 * 109.05982 * 162.25915 * 19 18 17 22 22 C 1.81394 * 101.91983 * 307.08419 * 21 19 18 23 23 O 1.42099 * 108.57493 * 61.57142 * 21 19 18 24 24 O 1.42094 * 108.57996 * 192.59656 * 21 19 18 25 25 C 1.45865 * 111.58807 * 282.80313 * 19 18 17 26 26 H 1.09003 * 109.46896 * 316.65384 * 1 2 3 27 27 H 1.09004 * 109.46602 * 76.65576 * 1 2 3 28 28 H 1.08995 * 109.46862 * 196.65395 * 1 2 3 29 29 H 1.09005 * 109.46987 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47579 * 300.00085 * 3 2 1 31 31 H 1.09003 * 109.47481 * 59.99889 * 3 2 1 32 32 H 1.09000 * 109.46912 * 180.02562 * 4 2 1 33 33 H 1.09002 * 109.47204 * 300.00121 * 4 2 1 34 34 H 0.96999 * 120.00167 * 179.97438 * 8 7 5 35 35 H 1.08999 * 109.47590 * 53.68310 * 13 2 1 36 36 H 1.08999 * 109.46830 * 173.68293 * 13 2 1 37 37 H 1.08993 * 108.98209 * 339.95066 * 15 14 13 38 38 H 1.09003 * 108.97900 * 98.66016 * 15 14 13 39 39 H 1.09007 * 108.91883 * 198.19231 * 16 15 14 40 40 H 1.09001 * 108.84814 * 79.58766 * 16 15 14 41 41 H 1.08994 * 108.77275 * 197.38807 * 17 16 15 42 42 H 1.09000 * 108.76584 * 79.21638 * 17 16 15 43 43 H 1.08997 * 109.57459 * 332.33552 * 18 17 16 44 44 H 1.09004 * 109.56757 * 211.96281 * 18 17 16 45 45 H 1.09002 * 109.47315 * 60.00275 * 22 21 19 46 46 H 1.09001 * 109.47079 * 179.97438 * 22 21 19 47 47 H 1.08998 * 109.47267 * 299.99783 * 22 21 19 48 48 H 1.09004 * 108.79604 * 300.43805 * 25 19 18 49 49 H 1.09003 * 108.79733 * 182.21305 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9172 0.8675 -2.3806 7 6 1.8712 -0.4816 -3.7319 8 7 1.4333 0.1386 -4.8058 9 14 2.9452 -2.0005 -3.9033 10 1 2.0865 -3.2112 -3.9493 11 1 3.7375 -1.9077 -5.1558 12 1 3.8651 -2.0900 -2.7410 13 6 2.0400 -0.7213 1.2493 14 7 1.6788 0.0537 2.4438 15 6 0.2881 -0.1321 2.7796 16 6 -0.3706 1.1773 3.2542 17 6 0.5525 1.9935 4.1829 18 6 1.2889 1.1398 5.1793 19 6 2.6559 0.7401 4.5805 20 1 3.1021 1.6106 4.0997 21 16 3.7471 0.1801 5.9171 22 6 3.6578 1.5691 7.0804 23 8 3.1636 -0.9616 6.5295 24 8 5.0732 0.0959 5.4136 25 6 2.5194 -0.3291 3.5977 26 1 -0.3633 0.7474 0.7054 27 1 -0.3633 0.2372 -1.0000 28 1 -0.3633 -0.9845 0.2945 29 1 3.1301 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1301 -0.7216 -1.2490 33 1 1.6767 -1.7489 -1.2492 34 1 1.6682 -0.1924 -5.6867 35 1 1.5873 -1.7111 1.3077 36 1 3.1241 -0.8203 1.1946 37 1 -0.2430 -0.4978 1.9008 38 1 0.2112 -0.8756 3.5730 39 1 -1.2885 0.9369 3.7907 40 1 -0.6193 1.7825 2.3825 41 1 -0.0504 2.7229 4.7238 42 1 1.2808 2.5274 3.5725 43 1 0.7071 0.2430 5.3923 44 1 1.4440 1.7037 6.0992 45 1 2.6255 1.7085 7.4012 46 1 4.2821 1.3568 7.9483 47 1 4.0119 2.4763 6.5909 48 1 2.0747 -1.1978 4.0833 49 1 3.5106 -0.6014 3.2350 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000446838951.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:34 Heat of formation + Delta-G solvation = -64.358927 kcal Electronic energy + Delta-G solvation = -26749.157070 eV Core-core repulsion = 23224.890489 eV Total energy + Delta-G solvation = -3524.266581 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.82151 -37.28009 -36.81801 -36.28082 -33.89310 -32.93451 -32.04964 -30.01339 -27.95039 -27.63172 -26.45144 -25.05140 -24.49760 -22.42522 -21.13397 -19.72931 -19.08104 -18.07199 -17.33517 -16.76943 -16.38257 -16.28163 -15.76660 -15.36343 -14.69575 -14.50579 -14.22536 -13.94322 -13.61256 -13.57883 -13.38419 -13.22717 -12.86834 -12.72054 -12.57017 -12.51149 -12.30868 -12.23312 -12.20040 -11.59124 -11.49281 -11.23529 -11.09340 -10.95520 -10.83520 -10.79324 -10.70924 -10.50559 -10.41507 -10.31161 -10.10106 -9.77776 -9.64521 -9.19866 -8.91562 -8.49271 -8.16102 -5.99933 -3.95968 -0.31959 2.41903 3.30584 3.32722 3.40869 3.44600 3.65467 4.02155 4.08761 4.39313 4.45455 4.48811 4.64965 4.75810 4.88825 5.04941 5.14893 5.17128 5.27251 5.27579 5.33567 5.43015 5.55398 5.56684 5.68505 5.74476 5.77082 5.88260 5.94508 6.04816 6.15688 6.19592 6.23792 6.28665 6.44806 6.60626 6.67160 6.81941 7.07112 7.15858 7.17093 7.24272 7.33406 7.38747 7.51272 7.85588 8.59671 9.05802 9.63393 11.13097 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.020731 B = 0.003467 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.339022 B = 8074.970113 C = 8825.767109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.042 4.042 3 C -0.115 4.115 4 C -0.005 4.005 5 C -0.506 4.506 6 H 0.078 0.922 7 C 0.065 3.935 8 N -0.906 5.906 9 Si 0.875 3.125 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.059 3.941 14 N -0.507 5.507 15 C 0.025 3.975 16 C -0.109 4.109 17 C -0.104 4.104 18 C -0.102 4.102 19 C -0.554 4.554 20 H 0.147 0.853 21 S 2.414 3.586 22 C -0.657 4.657 23 O -0.940 6.940 24 O -0.939 6.939 25 C 0.059 3.941 26 H 0.048 0.952 27 H 0.073 0.927 28 H 0.037 0.963 29 H 0.037 0.963 30 H 0.058 0.942 31 H 0.047 0.953 32 H 0.015 0.985 33 H 0.008 0.992 34 H 0.261 0.739 35 H 0.033 0.967 36 H 0.069 0.931 37 H 0.096 0.904 38 H 0.034 0.966 39 H 0.056 0.944 40 H 0.068 0.932 41 H 0.056 0.944 42 H 0.073 0.927 43 H 0.081 0.919 44 H 0.071 0.929 45 H 0.131 0.869 46 H 0.128 0.872 47 H 0.130 0.870 48 H 0.051 0.949 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.322 3.966 24.716 25.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.043 4.043 3 C -0.172 4.172 4 C -0.043 4.043 5 C -0.544 4.544 6 H 0.096 0.904 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.703 3.297 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.191 1.191 13 C -0.068 4.068 14 N -0.230 5.230 15 C -0.103 4.103 16 C -0.147 4.147 17 C -0.143 4.143 18 C -0.140 4.140 19 C -0.664 4.664 20 H 0.165 0.835 21 S 2.597 3.403 22 C -0.806 4.806 23 O -0.937 6.937 24 O -0.936 6.936 25 C -0.070 4.070 26 H 0.067 0.933 27 H 0.092 0.908 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.033 0.967 33 H 0.026 0.974 34 H 0.071 0.929 35 H 0.051 0.949 36 H 0.088 0.912 37 H 0.114 0.886 38 H 0.052 0.948 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.075 0.925 42 H 0.092 0.908 43 H 0.100 0.900 44 H 0.089 0.911 45 H 0.150 0.850 46 H 0.146 0.854 47 H 0.149 0.851 48 H 0.069 0.931 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.273 3.664 24.496 24.770 hybrid contribution 0.111 -0.916 -0.152 0.935 sum 0.384 2.748 24.344 24.502 Atomic orbital electron populations 1.22128 0.95850 0.99072 1.02692 1.20355 0.95028 0.96231 0.92684 1.21589 0.99522 0.95465 1.00652 1.19641 0.96049 0.95299 0.93324 1.21116 1.31455 1.13181 0.88644 0.90389 1.25010 0.95782 0.96735 0.96032 1.69905 1.46161 1.40638 0.97833 0.86858 0.81327 0.83981 0.77548 1.20524 1.21569 1.19108 1.22532 1.00411 0.94257 0.89621 1.61509 1.02951 1.56280 1.02261 1.22522 0.89849 0.96557 1.01371 1.21941 0.97105 0.96666 0.99013 1.21113 0.98975 0.97563 0.96629 1.21347 0.92873 1.01722 0.98088 1.29233 1.11651 1.10881 1.14660 0.83519 1.08168 0.76366 0.77581 0.78189 1.30305 1.11721 1.20946 1.17624 1.93582 1.79071 1.45358 1.75655 1.93611 1.34510 1.86181 1.79338 1.20642 1.00114 0.93906 0.92344 0.93316 0.90787 0.94423 0.94399 0.92333 0.93397 0.96706 0.97421 0.92895 0.94855 0.91205 0.88565 0.94803 0.92545 0.91320 0.92543 0.90824 0.90006 0.91107 0.85030 0.85376 0.85113 0.93085 0.90260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 6.88 37.16 0.26 -2.22 16 2 C -0.04 -0.79 0.61 -154.51 -0.09 -0.88 16 3 C -0.11 -2.12 7.92 37.15 0.29 -1.82 16 4 C -0.01 -0.12 3.11 -27.88 -0.09 -0.21 16 5 C -0.51 -13.75 7.97 -34.44 -0.27 -14.03 16 6 H 0.08 2.26 6.06 -52.49 -0.32 1.94 16 7 C 0.06 1.86 5.47 -17.82 -0.10 1.76 16 8 N -0.91 -27.60 13.96 55.43 0.77 -26.82 16 9 Si 0.88 21.73 27.47 -169.99 -4.67 17.06 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 13 C 0.06 0.93 4.08 -3.82 -0.02 0.91 16 14 N -0.51 -6.59 3.12 -239.55 -0.75 -7.34 16 15 C 0.03 0.30 4.09 -4.67 -0.02 0.28 16 16 C -0.11 -1.10 5.99 -25.50 -0.15 -1.25 16 17 C -0.10 -0.87 5.42 -27.32 -0.15 -1.02 16 18 C -0.10 -0.73 4.90 -27.21 -0.13 -0.86 16 19 C -0.55 -4.66 2.37 -29.32 -0.07 -4.73 16 20 H 0.15 1.07 7.59 -51.91 -0.39 0.67 16 21 S 2.41 20.55 4.84 -107.50 -0.52 20.03 16 22 C -0.66 -2.87 10.01 101.05 1.01 -1.86 16 23 O -0.94 -11.10 17.96 -57.83 -1.04 -12.14 16 24 O -0.94 -11.74 18.10 -57.83 -1.05 -12.79 16 25 C 0.06 0.67 4.12 -6.70 -0.03 0.64 16 26 H 0.05 0.75 5.11 -51.93 -0.27 0.48 16 27 H 0.07 1.53 6.26 -51.93 -0.32 1.20 16 28 H 0.04 0.62 6.88 -51.93 -0.36 0.26 16 29 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.06 1.22 6.62 -51.93 -0.34 0.87 16 31 H 0.05 0.78 7.44 -51.93 -0.39 0.39 16 32 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 33 H 0.01 0.18 7.57 -51.93 -0.39 -0.22 16 34 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 35 H 0.03 0.52 7.83 -51.93 -0.41 0.11 16 36 H 0.07 1.11 7.52 -51.93 -0.39 0.72 16 37 H 0.10 1.26 3.68 -51.93 -0.19 1.07 16 38 H 0.03 0.38 6.51 -51.93 -0.34 0.04 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.76 6.96 -51.93 -0.36 0.40 16 41 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.07 0.69 7.38 -51.93 -0.38 0.30 16 43 H 0.08 0.63 7.15 -51.93 -0.37 0.26 16 44 H 0.07 0.28 5.50 -51.93 -0.29 0.00 16 45 H 0.13 0.34 6.31 -51.92 -0.33 0.02 16 46 H 0.13 0.48 8.14 -51.92 -0.42 0.06 16 47 H 0.13 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.05 0.57 7.14 -51.93 -0.37 0.20 16 49 H 0.08 0.93 7.42 -51.93 -0.39 0.54 16 LS Contribution 362.28 15.07 5.46 5.46 Total: -1.00 -34.75 362.28 -9.59 -44.34 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -8.25 Total: -2.52 kcal Atomic # 6 Polarization: -25.73 SS G_CDS: 0.44 Total: -25.29 kcal Atomic # 7 Polarization: -34.19 SS G_CDS: 0.03 Total: -34.16 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: -2.08 Total: -24.93 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Atomic # 16 Polarization: 20.55 SS G_CDS: -0.52 Total: 20.03 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.75 -9.59 -44.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000446838951.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.015 kcal (2) G-P(sol) polarization free energy of solvation -34.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds