Wall clock time and date at job start Tue Mar 31 2020 11:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53013 * 1 3 3 C 1.52993 * 109.46839 * 2 1 4 4 C 1.52994 * 109.46982 * 239.99934 * 2 1 3 5 5 C 1.50706 * 109.47161 * 60.00035 * 4 2 1 6 6 H 1.07999 * 119.99903 * 0.02562 * 5 4 2 7 7 C 1.37875 * 119.99796 * 179.97438 * 5 4 2 8 8 N 1.31513 * 120.00064 * 180.02562 * 7 5 4 9 9 Si 1.86806 * 120.00160 * 0.02562 * 7 5 4 10 10 H 1.48505 * 109.46785 * 89.99943 * 9 7 5 11 11 H 1.48500 * 109.47064 * 209.99769 * 9 7 5 12 12 H 1.48493 * 109.47111 * 330.00317 * 9 7 5 13 13 C 1.53000 * 109.46646 * 120.00023 * 2 1 3 14 14 N 1.46903 * 109.46965 * 293.67660 * 13 2 1 15 15 C 1.44269 * 110.99585 * 77.53967 * 14 13 2 16 16 C 1.54065 * 111.98126 * 219.30495 * 15 14 13 17 17 C 1.54299 * 112.28961 * 318.91551 * 16 15 14 18 18 C 1.50462 * 113.02934 * 318.30421 * 17 16 15 19 19 C 1.54502 * 108.85551 * 92.15588 * 18 17 16 20 20 H 1.08997 * 109.06030 * 43.34330 * 19 18 17 21 21 S 1.81401 * 109.05982 * 162.25915 * 19 18 17 22 22 C 1.81394 * 101.91983 * 307.08419 * 21 19 18 23 23 O 1.42099 * 108.57493 * 61.57142 * 21 19 18 24 24 O 1.42094 * 108.57996 * 192.59656 * 21 19 18 25 25 C 1.45865 * 111.58807 * 282.80313 * 19 18 17 26 26 H 1.09003 * 109.46896 * 316.65384 * 1 2 3 27 27 H 1.09004 * 109.46602 * 76.65576 * 1 2 3 28 28 H 1.08995 * 109.46862 * 196.65395 * 1 2 3 29 29 H 1.09005 * 109.46987 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47579 * 300.00085 * 3 2 1 31 31 H 1.09003 * 109.47481 * 59.99889 * 3 2 1 32 32 H 1.09000 * 109.46912 * 180.02562 * 4 2 1 33 33 H 1.09002 * 109.47204 * 300.00121 * 4 2 1 34 34 H 0.96999 * 120.00167 * 179.97438 * 8 7 5 35 35 H 1.08999 * 109.47590 * 53.68310 * 13 2 1 36 36 H 1.08999 * 109.46830 * 173.68293 * 13 2 1 37 37 H 1.08993 * 108.98209 * 339.95066 * 15 14 13 38 38 H 1.09003 * 108.97900 * 98.66016 * 15 14 13 39 39 H 1.09007 * 108.91883 * 198.19231 * 16 15 14 40 40 H 1.09001 * 108.84814 * 79.58766 * 16 15 14 41 41 H 1.08994 * 108.77275 * 197.38807 * 17 16 15 42 42 H 1.09000 * 108.76584 * 79.21638 * 17 16 15 43 43 H 1.08997 * 109.57459 * 332.33552 * 18 17 16 44 44 H 1.09004 * 109.56757 * 211.96281 * 18 17 16 45 45 H 1.09002 * 109.47315 * 60.00275 * 22 21 19 46 46 H 1.09001 * 109.47079 * 179.97438 * 22 21 19 47 47 H 1.08998 * 109.47267 * 299.99783 * 22 21 19 48 48 H 1.09004 * 108.79604 * 300.43805 * 25 19 18 49 49 H 1.09003 * 108.79733 * 182.21305 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9172 0.8675 -2.3806 7 6 1.8712 -0.4816 -3.7319 8 7 1.4333 0.1386 -4.8058 9 14 2.9452 -2.0005 -3.9033 10 1 2.0865 -3.2112 -3.9493 11 1 3.7375 -1.9077 -5.1558 12 1 3.8651 -2.0900 -2.7410 13 6 2.0400 -0.7213 1.2493 14 7 1.6788 0.0537 2.4438 15 6 0.2881 -0.1321 2.7796 16 6 -0.3706 1.1773 3.2542 17 6 0.5525 1.9935 4.1829 18 6 1.2889 1.1398 5.1793 19 6 2.6559 0.7401 4.5805 20 1 3.1021 1.6106 4.0997 21 16 3.7471 0.1801 5.9171 22 6 3.6578 1.5691 7.0804 23 8 3.1636 -0.9616 6.5295 24 8 5.0732 0.0959 5.4136 25 6 2.5194 -0.3291 3.5977 26 1 -0.3633 0.7474 0.7054 27 1 -0.3633 0.2372 -1.0000 28 1 -0.3633 -0.9845 0.2945 29 1 3.1301 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1301 -0.7216 -1.2490 33 1 1.6767 -1.7489 -1.2492 34 1 1.6682 -0.1924 -5.6867 35 1 1.5873 -1.7111 1.3077 36 1 3.1241 -0.8203 1.1946 37 1 -0.2430 -0.4978 1.9008 38 1 0.2112 -0.8756 3.5730 39 1 -1.2885 0.9369 3.7907 40 1 -0.6193 1.7825 2.3825 41 1 -0.0504 2.7229 4.7238 42 1 1.2808 2.5274 3.5725 43 1 0.7071 0.2430 5.3923 44 1 1.4440 1.7037 6.0992 45 1 2.6255 1.7085 7.4012 46 1 4.2821 1.3568 7.9483 47 1 4.0119 2.4763 6.5909 48 1 2.0747 -1.1978 4.0833 49 1 3.5106 -0.6014 3.2350 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000446838951.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:33 Heat of formation + Delta-G solvation = -89.395705 kcal Electronic energy + Delta-G solvation = -26750.242746 eV Core-core repulsion = 23224.890489 eV Total energy + Delta-G solvation = -3525.352257 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.83780 -38.21179 -37.92609 -37.03996 -35.15889 -34.07110 -33.60876 -30.47891 -29.64879 -28.86790 -27.85552 -26.05133 -25.52076 -24.16040 -21.99491 -20.56663 -19.81088 -19.52149 -18.86291 -18.04424 -17.12884 -17.04636 -16.67514 -16.35698 -16.17425 -15.58639 -15.37678 -14.99897 -14.96456 -14.66047 -14.29755 -14.07539 -13.93224 -13.90931 -13.78322 -13.66778 -13.26034 -13.13101 -13.02130 -12.96053 -12.74857 -12.57458 -12.29009 -12.19228 -12.09034 -11.97136 -11.91228 -11.73020 -11.62076 -11.44315 -11.34818 -11.15374 -11.03466 -10.90860 -10.69885 -10.57614 -9.22315 -8.22061 -6.21579 -0.92698 1.34213 1.36755 1.47348 1.85521 2.38729 2.64334 3.05120 3.09668 3.13149 3.49336 3.76056 4.00812 4.06493 4.13065 4.14388 4.19352 4.27895 4.30923 4.38987 4.41441 4.44849 4.54116 4.66804 4.72461 4.83809 4.87975 4.94216 4.98122 4.99995 5.05240 5.09763 5.14450 5.20387 5.23531 5.37857 5.41318 5.45430 5.50266 5.57001 5.63093 5.64986 5.77693 5.84291 6.13177 6.28062 6.42461 6.85311 7.40634 8.94067 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.020731 B = 0.003467 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.339022 B = 8074.970113 C = 8825.767109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.042 4.042 3 C -0.104 4.104 4 C -0.004 4.004 5 C -0.500 4.500 6 H 0.047 0.953 7 C 0.003 3.997 8 N -0.954 5.954 9 Si 0.938 3.062 10 H -0.271 1.271 11 H -0.288 1.288 12 H -0.252 1.252 13 C 0.066 3.934 14 N -0.506 5.506 15 C 0.021 3.979 16 C -0.110 4.110 17 C -0.104 4.104 18 C -0.104 4.104 19 C -0.551 4.551 20 H 0.161 0.839 21 S 2.413 3.587 22 C -0.632 4.632 23 O -0.981 6.981 24 O -0.990 6.990 25 C 0.053 3.947 26 H 0.072 0.928 27 H 0.035 0.965 28 H 0.048 0.952 29 H 0.034 0.966 30 H 0.025 0.975 31 H 0.072 0.928 32 H 0.011 0.989 33 H 0.009 0.991 34 H 0.262 0.738 35 H 0.035 0.965 36 H 0.067 0.933 37 H 0.081 0.919 38 H 0.041 0.959 39 H 0.071 0.929 40 H 0.054 0.946 41 H 0.078 0.922 42 H 0.064 0.936 43 H 0.077 0.923 44 H 0.111 0.889 45 H 0.160 0.840 46 H 0.141 0.859 47 H 0.156 0.844 48 H 0.050 0.950 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.197 4.600 28.223 28.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.042 4.042 3 C -0.161 4.161 4 C -0.042 4.042 5 C -0.538 4.538 6 H 0.065 0.935 7 C -0.193 4.193 8 N -0.596 5.596 9 Si 0.763 3.237 10 H -0.196 1.196 11 H -0.214 1.214 12 H -0.176 1.176 13 C -0.062 4.062 14 N -0.229 5.229 15 C -0.107 4.107 16 C -0.148 4.148 17 C -0.142 4.142 18 C -0.142 4.142 19 C -0.661 4.661 20 H 0.179 0.821 21 S 2.601 3.399 22 C -0.786 4.786 23 O -0.978 6.978 24 O -0.987 6.987 25 C -0.075 4.075 26 H 0.091 0.909 27 H 0.054 0.946 28 H 0.067 0.933 29 H 0.053 0.947 30 H 0.044 0.956 31 H 0.091 0.909 32 H 0.029 0.971 33 H 0.027 0.973 34 H 0.071 0.929 35 H 0.053 0.947 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.059 0.941 39 H 0.090 0.910 40 H 0.073 0.927 41 H 0.097 0.903 42 H 0.083 0.917 43 H 0.095 0.905 44 H 0.129 0.871 45 H 0.178 0.822 46 H 0.159 0.841 47 H 0.174 0.826 48 H 0.068 0.932 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.400 4.259 28.003 28.328 hybrid contribution -0.005 -1.005 -1.173 1.545 sum 0.394 3.254 26.830 27.029 Atomic orbital electron populations 1.22027 0.95163 1.00489 1.00995 1.20270 0.95565 0.96043 0.92333 1.21476 0.99173 0.95338 1.00161 1.19609 0.95626 0.95304 0.93683 1.21397 1.29978 1.12065 0.90329 0.93530 1.25875 0.97544 1.00066 0.95829 1.70054 1.48314 1.42790 0.98417 0.85846 0.79789 0.80234 0.77873 1.19646 1.21440 1.17580 1.22286 1.00079 0.94160 0.89663 1.61496 1.03903 1.55517 1.02025 1.22575 0.88990 0.98096 1.01024 1.21957 0.98098 0.95548 0.99200 1.21122 0.98792 0.97720 0.96596 1.21473 0.91492 1.01950 0.99310 1.29175 1.12798 1.10207 1.13963 0.82146 1.07867 0.74953 0.78543 0.78502 1.30096 1.14159 1.18356 1.15983 1.93528 1.79283 1.48778 1.76204 1.93549 1.36915 1.87544 1.80673 1.20731 0.99177 0.95320 0.92301 0.90931 0.94607 0.93323 0.94709 0.95587 0.90919 0.97084 0.97277 0.92911 0.94719 0.91478 0.90048 0.94069 0.91019 0.92685 0.90328 0.91705 0.90452 0.87090 0.82236 0.84090 0.82566 0.93222 0.91269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.62 6.88 71.99 0.50 -4.12 16 2 C -0.04 -1.55 0.61 -52.18 -0.03 -1.58 16 3 C -0.10 -3.86 7.92 71.98 0.57 -3.29 16 4 C 0.00 -0.20 3.11 29.85 0.09 -0.11 16 5 C -0.50 -28.09 7.97 25.60 0.20 -27.89 16 6 H 0.05 2.86 6.06 -2.91 -0.02 2.84 16 7 C 0.00 0.15 5.47 84.65 0.46 0.62 16 8 N -0.95 -60.13 13.96 21.45 0.30 -59.83 16 9 Si 0.94 45.28 27.47 68.60 1.88 47.17 16 10 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 11 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 12 H -0.25 -11.47 6.54 99.48 0.65 -10.82 16 13 C 0.07 2.03 4.08 86.30 0.35 2.39 16 14 N -0.51 -12.43 3.12 -911.80 -2.84 -15.27 16 15 C 0.02 0.47 4.09 87.15 0.36 0.83 16 16 C -0.11 -1.92 5.99 31.39 0.19 -1.73 16 17 C -0.10 -1.34 5.42 30.21 0.16 -1.17 16 18 C -0.10 -1.07 4.90 30.28 0.15 -0.92 16 19 C -0.55 -7.85 2.37 28.92 0.07 -7.78 16 20 H 0.16 1.85 7.59 -2.40 -0.02 1.83 16 21 S 2.41 36.29 4.84 -56.49 -0.27 36.02 16 22 C -0.63 -2.42 10.01 113.37 1.13 -1.29 16 23 O -0.98 -22.03 17.96 -127.37 -2.29 -24.32 16 24 O -0.99 -24.17 18.10 -127.37 -2.30 -26.47 16 25 C 0.05 1.14 4.12 83.94 0.35 1.49 16 26 H 0.07 2.20 5.11 -2.39 -0.01 2.18 16 27 H 0.03 1.53 6.26 -2.38 -0.01 1.51 16 28 H 0.05 1.59 6.88 -2.39 -0.02 1.57 16 29 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 30 H 0.02 1.10 6.62 -2.39 -0.02 1.09 16 31 H 0.07 2.29 7.44 -2.39 -0.02 2.28 16 32 H 0.01 0.51 7.20 -2.39 -0.02 0.50 16 33 H 0.01 0.41 7.57 -2.39 -0.02 0.40 16 34 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 35 H 0.03 1.05 7.83 -2.39 -0.02 1.03 16 36 H 0.07 2.10 7.52 -2.39 -0.02 2.08 16 37 H 0.08 2.03 3.68 -2.39 -0.01 2.02 16 38 H 0.04 0.85 6.51 -2.39 -0.02 0.84 16 39 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 40 H 0.05 1.11 6.96 -2.39 -0.02 1.09 16 41 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.06 0.97 7.38 -2.39 -0.02 0.96 16 43 H 0.08 0.92 7.15 -2.39 -0.02 0.90 16 44 H 0.11 0.24 5.50 -2.38 -0.01 0.22 16 45 H 0.16 -0.19 6.31 -2.39 -0.02 -0.21 16 46 H 0.14 0.38 8.14 -2.39 -0.02 0.36 16 47 H 0.16 -0.04 8.14 -2.39 -0.02 -0.06 16 48 H 0.05 1.07 7.14 -2.38 -0.02 1.05 16 49 H 0.07 1.60 7.42 -2.39 -0.02 1.58 16 Total: -1.00 -79.19 362.28 -0.10 -79.29 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: 0.87 Total: 7.97 kcal Atomic # 6 Polarization: -49.11 SS G_CDS: 4.55 Total: -44.56 kcal Atomic # 7 Polarization: -72.56 SS G_CDS: -2.54 Total: -75.10 kcal Atomic # 8 Polarization: -46.20 SS G_CDS: -4.59 Total: -50.79 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.88 Total: 47.17 kcal Atomic # 16 Polarization: 36.29 SS G_CDS: -0.27 Total: 36.02 kcal Total: -79.19 -0.10 -79.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000446838951.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.104 kcal (2) G-P(sol) polarization free energy of solvation -79.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds