Wall clock time and date at job start Tue Mar 31 2020 11:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46963 * 2 1 4 4 C 1.52999 * 109.47359 * 239.99867 * 2 1 3 5 5 C 1.50699 * 109.46755 * 59.99618 * 4 2 1 6 6 H 1.07999 * 120.00565 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99535 * 179.97438 * 5 4 2 8 8 N 1.31507 * 120.00183 * 0.02562 * 7 5 4 9 9 Si 1.86810 * 119.99638 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46744 * 60.00327 * 9 7 5 11 11 H 1.48502 * 109.46707 * 180.02562 * 9 7 5 12 12 H 1.48490 * 109.47086 * 300.00151 * 9 7 5 13 13 C 1.52997 * 109.47273 * 119.99530 * 2 1 3 14 14 N 1.46899 * 109.47620 * 301.63447 * 13 2 1 15 15 C 1.46847 * 110.99999 * 77.34747 * 14 13 2 16 16 C 1.53042 * 109.52209 * 185.84309 * 15 14 13 17 17 C 1.53114 * 109.27814 * 300.82004 * 16 15 14 18 18 C 1.53124 * 109.16086 * 57.65705 * 17 16 15 19 19 C 1.46845 * 111.00448 * 201.56050 * 14 13 2 20 20 H 1.08997 * 109.46588 * 294.16469 * 19 14 13 21 21 C 1.53004 * 109.46009 * 54.14186 * 19 14 13 22 22 S 1.81402 * 109.46991 * 67.18708 * 21 19 14 23 23 C 1.81401 * 101.92244 * 186.07306 * 22 21 19 24 24 O 1.42094 * 108.58221 * 300.56464 * 22 21 19 25 25 O 1.42107 * 108.57780 * 71.58915 * 22 21 19 26 26 H 1.08998 * 109.46949 * 313.92769 * 1 2 3 27 27 H 1.08994 * 109.46810 * 73.92963 * 1 2 3 28 28 H 1.09004 * 109.46738 * 193.93231 * 1 2 3 29 29 H 1.09001 * 109.46988 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.46800 * 300.00056 * 3 2 1 31 31 H 1.09002 * 109.47086 * 59.99523 * 3 2 1 32 32 H 1.08994 * 109.46860 * 179.97438 * 4 2 1 33 33 H 1.09003 * 109.46875 * 300.00070 * 4 2 1 34 34 H 0.97000 * 119.99813 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.47401 * 181.63046 * 13 2 1 36 36 H 1.09005 * 109.47186 * 61.63202 * 13 2 1 37 37 H 1.09003 * 109.46539 * 305.85809 * 15 14 13 38 38 H 1.09006 * 109.46247 * 65.82983 * 15 14 13 39 39 H 1.08999 * 109.50303 * 60.76360 * 16 15 14 40 40 H 1.09008 * 109.50015 * 180.88373 * 16 15 14 41 41 H 1.08997 * 109.52391 * 177.55815 * 17 16 15 42 42 H 1.09002 * 109.52615 * 297.69149 * 17 16 15 43 43 H 1.09000 * 109.50577 * 182.40052 * 18 17 16 44 44 H 1.09003 * 109.49954 * 62.28419 * 18 17 16 45 45 H 1.08998 * 109.47137 * 187.18515 * 21 19 14 46 46 H 1.08993 * 109.47263 * 307.18798 * 21 19 14 47 47 H 1.09004 * 109.46885 * 60.00097 * 23 22 21 48 48 H 1.08996 * 109.47511 * 179.97438 * 23 22 21 49 49 H 1.08999 * 109.47037 * 300.00513 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4796 6 1 0.9170 0.8674 -2.3806 7 6 1.8712 -0.4817 -3.7319 8 7 2.6274 -1.5509 -3.8525 9 14 1.2490 0.3993 -5.2572 10 1 1.7441 1.7993 -5.2566 11 1 1.7440 -0.3009 -6.4696 12 1 -0.2359 0.3993 -5.2577 13 6 2.0401 -0.7211 1.2493 14 7 1.5185 -0.0518 2.4484 15 6 0.1140 -0.4110 2.6826 16 6 -0.4369 0.4129 3.8488 17 6 0.3966 0.1344 5.1027 18 6 1.8627 0.4710 4.8167 19 6 2.3469 -0.3545 3.6225 20 1 2.2680 -1.4156 3.8588 21 6 3.8059 -0.0066 3.3203 22 16 3.9732 1.7902 3.1354 23 6 5.7009 1.9533 2.6071 24 8 3.1325 2.2162 2.0720 25 8 3.8324 2.3920 4.4150 26 1 -0.3633 0.7129 0.7401 27 1 -0.3633 0.2845 -0.9875 28 1 -0.3633 -0.9975 0.2475 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 3.1300 -0.7208 -1.2493 33 1 1.6767 -1.7489 -1.2492 34 1 2.8623 -1.8818 -4.7335 35 1 3.1296 -0.6959 1.2640 36 1 1.7008 -1.7569 1.2349 37 1 -0.4684 -0.2041 1.7848 38 1 0.0457 -1.4719 2.9233 39 1 -0.3816 1.4734 3.6033 40 1 -1.4747 0.1348 4.0326 41 1 0.0349 0.7516 5.9250 42 1 0.3094 -0.9183 5.3717 43 1 2.4679 0.2346 5.6919 44 1 1.9541 1.5325 4.5863 45 1 4.4381 -0.3479 4.1400 46 1 4.1125 -0.4970 2.3964 47 1 5.8478 1.4116 1.6726 48 1 5.9371 3.0067 2.4570 49 1 6.3559 1.5393 3.3737 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449527784.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:26 Heat of formation + Delta-G solvation = -50.770327 kcal Electronic energy + Delta-G solvation = -27704.704231 eV Core-core repulsion = 24181.026896 eV Total energy + Delta-G solvation = -3523.677335 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.69245 -36.87571 -36.20423 -35.69303 -33.33974 -32.72492 -31.46768 -29.69038 -27.60171 -26.90886 -26.58914 -25.69514 -23.20195 -22.34934 -21.40707 -19.88393 -18.67895 -17.71611 -16.59201 -16.27144 -16.19833 -15.97217 -15.34115 -14.84110 -14.62856 -14.36091 -14.12537 -13.94272 -13.21640 -13.20459 -13.13573 -12.93721 -12.74260 -12.41770 -12.37250 -12.06829 -11.97583 -11.93369 -11.67918 -11.48656 -11.22403 -10.99169 -10.87103 -10.84045 -10.68120 -10.60701 -10.36055 -10.28339 -10.11907 -10.09605 -9.82841 -9.62580 -9.27909 -8.79347 -8.67504 -8.25343 -7.90775 -5.91054 -3.89639 0.14477 2.91426 3.38974 3.42862 3.46200 3.77907 3.94168 4.20844 4.48086 4.54971 4.59688 4.78655 4.91069 4.96614 5.09849 5.18252 5.23056 5.36864 5.45157 5.52352 5.61801 5.67493 5.68609 5.72881 5.84460 5.94937 5.97978 6.04828 6.15892 6.18625 6.27009 6.35600 6.43551 6.49502 6.63388 7.01481 7.06565 7.14998 7.33426 7.42834 7.48322 7.59771 7.76704 7.84792 7.99237 8.11028 8.57039 9.15730 9.72558 11.20758 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016531 B = 0.004606 C = 0.003976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.334580 B = 6077.814971 C = 7039.891327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.052 4.052 3 C -0.107 4.107 4 C 0.033 3.967 5 C -0.501 4.501 6 H 0.060 0.940 7 C 0.054 3.946 8 N -0.901 5.901 9 Si 0.887 3.113 10 H -0.277 1.277 11 H -0.290 1.290 12 H -0.278 1.278 13 C 0.060 3.940 14 N -0.522 5.522 15 C 0.018 3.982 16 C -0.120 4.120 17 C -0.116 4.116 18 C -0.138 4.138 19 C 0.101 3.899 20 H 0.054 0.946 21 C -0.616 4.616 22 S 2.409 3.591 23 C -0.670 4.670 24 O -0.879 6.879 25 O -0.952 6.952 26 H 0.053 0.947 27 H 0.065 0.935 28 H 0.036 0.964 29 H 0.036 0.964 30 H 0.040 0.960 31 H 0.080 0.920 32 H 0.012 0.988 33 H 0.009 0.991 34 H 0.258 0.742 35 H 0.065 0.935 36 H 0.030 0.970 37 H 0.124 0.876 38 H 0.025 0.975 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.056 0.944 43 H 0.072 0.928 44 H 0.084 0.916 45 H 0.127 0.873 46 H 0.140 0.860 47 H 0.128 0.872 48 H 0.125 0.875 49 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.111 2.789 18.333 18.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.053 4.053 3 C -0.165 4.165 4 C -0.005 4.005 5 C -0.539 4.539 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.541 5.541 9 Si 0.715 3.285 10 H -0.203 1.203 11 H -0.216 1.216 12 H -0.204 1.204 13 C -0.066 4.066 14 N -0.247 5.247 15 C -0.108 4.108 16 C -0.158 4.158 17 C -0.153 4.153 18 C -0.176 4.176 19 C -0.008 4.008 20 H 0.072 0.928 21 C -0.744 4.744 22 S 2.589 3.411 23 C -0.818 4.818 24 O -0.876 6.876 25 O -0.949 6.949 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.099 0.901 32 H 0.030 0.970 33 H 0.028 0.972 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.048 0.952 37 H 0.141 0.859 38 H 0.043 0.957 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.075 0.925 43 H 0.091 0.909 44 H 0.102 0.898 45 H 0.145 0.855 46 H 0.158 0.842 47 H 0.147 0.853 48 H 0.144 0.856 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.635 3.833 18.286 18.755 hybrid contribution 0.664 -1.409 -0.902 1.800 sum 2.299 2.424 17.384 17.702 Atomic orbital electron populations 1.22167 0.96715 0.99030 1.01621 1.20590 0.94577 0.97073 0.93075 1.21783 0.99627 0.94475 1.00630 1.19141 0.95873 0.94889 0.90562 1.21232 1.30453 1.11728 0.90531 0.92175 1.25003 0.95518 0.95132 0.98979 1.69954 1.37579 1.23358 1.23233 0.86745 0.79164 0.79873 0.82727 1.20309 1.21584 1.20394 1.22468 0.98951 0.95260 0.89954 1.62037 1.01844 1.59076 1.01705 1.23092 0.89921 0.96464 1.01355 1.21640 0.98259 1.01608 0.94312 1.21518 0.94727 1.00955 0.98144 1.22067 0.97207 1.01457 0.96879 1.21189 0.88280 0.99056 0.92308 0.92779 1.30553 1.04869 1.27557 1.11422 1.08713 0.77456 0.78340 0.76556 1.30426 1.27194 1.11542 1.12600 1.93847 1.60697 1.79044 1.54042 1.93551 1.85220 1.74008 1.42108 0.92829 0.91601 0.94537 0.94506 0.94100 0.90121 0.96977 0.97235 0.93260 0.91663 0.95208 0.85885 0.95703 0.90814 0.91832 0.91803 0.92475 0.90937 0.89778 0.85468 0.84217 0.85314 0.85633 0.86347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 6.65 37.16 0.25 -2.37 16 2 C -0.05 -1.05 0.60 -154.51 -0.09 -1.14 16 3 C -0.11 -2.16 6.37 37.16 0.24 -1.92 16 4 C 0.03 0.82 4.04 -27.88 -0.11 0.71 16 5 C -0.50 -13.73 7.45 -34.44 -0.26 -13.98 16 6 H 0.06 1.62 5.78 -52.49 -0.30 1.31 16 7 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 8 N -0.90 -26.84 13.29 55.43 0.74 -26.10 16 9 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 C 0.06 1.01 3.99 -3.83 -0.02 1.00 16 14 N -0.52 -7.54 2.57 -226.69 -0.58 -8.12 16 15 C 0.02 0.25 4.66 -3.83 -0.02 0.23 16 16 C -0.12 -1.41 6.09 -26.65 -0.16 -1.58 16 17 C -0.12 -1.25 6.00 -26.61 -0.16 -1.41 16 18 C -0.14 -1.62 4.58 -26.65 -0.12 -1.75 16 19 C 0.10 1.23 2.14 -67.72 -0.14 1.09 16 20 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 21 C -0.62 -6.22 5.35 37.16 0.20 -6.02 16 22 S 2.41 27.54 4.58 -107.50 -0.49 27.05 16 23 C -0.67 -5.70 10.62 101.05 1.07 -4.62 16 24 O -0.88 -13.27 11.66 -57.83 -0.67 -13.94 16 25 O -0.95 -13.02 15.73 -57.83 -0.91 -13.93 16 26 H 0.05 0.91 5.99 -51.93 -0.31 0.59 16 27 H 0.07 1.38 6.29 -51.93 -0.33 1.05 16 28 H 0.04 0.65 7.28 -51.93 -0.38 0.27 16 29 H 0.04 0.72 7.25 -51.93 -0.38 0.35 16 30 H 0.04 0.89 6.62 -51.93 -0.34 0.55 16 31 H 0.08 1.56 5.36 -51.93 -0.28 1.28 16 32 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 35 H 0.07 1.02 5.10 -51.93 -0.26 0.75 16 36 H 0.03 0.51 7.98 -51.93 -0.41 0.10 16 37 H 0.12 1.78 2.99 -51.93 -0.16 1.63 16 38 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.06 0.65 8.14 -51.92 -0.42 0.22 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.08 1.12 5.46 -51.93 -0.28 0.84 16 45 H 0.13 0.88 8.14 -51.92 -0.42 0.46 16 46 H 0.14 1.36 5.54 -51.93 -0.29 1.08 16 47 H 0.13 1.03 8.14 -51.92 -0.42 0.60 16 48 H 0.13 1.00 8.14 -51.93 -0.42 0.58 16 49 H 0.12 0.73 8.14 -51.92 -0.42 0.31 16 LS Contribution 358.47 15.07 5.40 5.40 Total: -1.00 -33.26 358.47 -9.32 -42.58 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -8.35 Total: 0.69 kcal Atomic # 6 Polarization: -30.91 SS G_CDS: 0.57 Total: -30.33 kcal Atomic # 7 Polarization: -34.38 SS G_CDS: 0.15 Total: -34.23 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: -1.58 Total: -27.87 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: 27.54 SS G_CDS: -0.49 Total: 27.05 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.26 -9.32 -42.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449527784.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.193 kcal (2) G-P(sol) polarization free energy of solvation -33.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds