Wall clock time and date at job start Tue Mar 31 2020 11:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46963 * 2 1 4 4 C 1.52999 * 109.47359 * 239.99867 * 2 1 3 5 5 C 1.50699 * 109.46755 * 59.99618 * 4 2 1 6 6 H 1.07999 * 120.00565 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99535 * 179.97438 * 5 4 2 8 8 N 1.31507 * 120.00183 * 0.02562 * 7 5 4 9 9 Si 1.86810 * 119.99638 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46744 * 60.00327 * 9 7 5 11 11 H 1.48502 * 109.46707 * 180.02562 * 9 7 5 12 12 H 1.48490 * 109.47086 * 300.00151 * 9 7 5 13 13 C 1.52997 * 109.47273 * 119.99530 * 2 1 3 14 14 N 1.46899 * 109.47620 * 301.63447 * 13 2 1 15 15 C 1.46847 * 110.99999 * 77.34747 * 14 13 2 16 16 C 1.53042 * 109.52209 * 185.84309 * 15 14 13 17 17 C 1.53114 * 109.27814 * 300.82004 * 16 15 14 18 18 C 1.53124 * 109.16086 * 57.65705 * 17 16 15 19 19 C 1.46845 * 111.00448 * 201.56050 * 14 13 2 20 20 H 1.08997 * 109.46588 * 294.16469 * 19 14 13 21 21 C 1.53004 * 109.46009 * 54.14186 * 19 14 13 22 22 S 1.81402 * 109.46991 * 67.18708 * 21 19 14 23 23 C 1.81401 * 101.92244 * 186.07306 * 22 21 19 24 24 O 1.42094 * 108.58221 * 300.56464 * 22 21 19 25 25 O 1.42107 * 108.57780 * 71.58915 * 22 21 19 26 26 H 1.08998 * 109.46949 * 313.92769 * 1 2 3 27 27 H 1.08994 * 109.46810 * 73.92963 * 1 2 3 28 28 H 1.09004 * 109.46738 * 193.93231 * 1 2 3 29 29 H 1.09001 * 109.46988 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.46800 * 300.00056 * 3 2 1 31 31 H 1.09002 * 109.47086 * 59.99523 * 3 2 1 32 32 H 1.08994 * 109.46860 * 179.97438 * 4 2 1 33 33 H 1.09003 * 109.46875 * 300.00070 * 4 2 1 34 34 H 0.97000 * 119.99813 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.47401 * 181.63046 * 13 2 1 36 36 H 1.09005 * 109.47186 * 61.63202 * 13 2 1 37 37 H 1.09003 * 109.46539 * 305.85809 * 15 14 13 38 38 H 1.09006 * 109.46247 * 65.82983 * 15 14 13 39 39 H 1.08999 * 109.50303 * 60.76360 * 16 15 14 40 40 H 1.09008 * 109.50015 * 180.88373 * 16 15 14 41 41 H 1.08997 * 109.52391 * 177.55815 * 17 16 15 42 42 H 1.09002 * 109.52615 * 297.69149 * 17 16 15 43 43 H 1.09000 * 109.50577 * 182.40052 * 18 17 16 44 44 H 1.09003 * 109.49954 * 62.28419 * 18 17 16 45 45 H 1.08998 * 109.47137 * 187.18515 * 21 19 14 46 46 H 1.08993 * 109.47263 * 307.18798 * 21 19 14 47 47 H 1.09004 * 109.46885 * 60.00097 * 23 22 21 48 48 H 1.08996 * 109.47511 * 179.97438 * 23 22 21 49 49 H 1.08999 * 109.47037 * 300.00513 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4796 6 1 0.9170 0.8674 -2.3806 7 6 1.8712 -0.4817 -3.7319 8 7 2.6274 -1.5509 -3.8525 9 14 1.2490 0.3993 -5.2572 10 1 1.7441 1.7993 -5.2566 11 1 1.7440 -0.3009 -6.4696 12 1 -0.2359 0.3993 -5.2577 13 6 2.0401 -0.7211 1.2493 14 7 1.5185 -0.0518 2.4484 15 6 0.1140 -0.4110 2.6826 16 6 -0.4369 0.4129 3.8488 17 6 0.3966 0.1344 5.1027 18 6 1.8627 0.4710 4.8167 19 6 2.3469 -0.3545 3.6225 20 1 2.2680 -1.4156 3.8588 21 6 3.8059 -0.0066 3.3203 22 16 3.9732 1.7902 3.1354 23 6 5.7009 1.9533 2.6071 24 8 3.1325 2.2162 2.0720 25 8 3.8324 2.3920 4.4150 26 1 -0.3633 0.7129 0.7401 27 1 -0.3633 0.2845 -0.9875 28 1 -0.3633 -0.9975 0.2475 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 3.1300 -0.7208 -1.2493 33 1 1.6767 -1.7489 -1.2492 34 1 2.8623 -1.8818 -4.7335 35 1 3.1296 -0.6959 1.2640 36 1 1.7008 -1.7569 1.2349 37 1 -0.4684 -0.2041 1.7848 38 1 0.0457 -1.4719 2.9233 39 1 -0.3816 1.4734 3.6033 40 1 -1.4747 0.1348 4.0326 41 1 0.0349 0.7516 5.9250 42 1 0.3094 -0.9183 5.3717 43 1 2.4679 0.2346 5.6919 44 1 1.9541 1.5325 4.5863 45 1 4.4381 -0.3479 4.1400 46 1 4.1125 -0.4970 2.3964 47 1 5.8478 1.4116 1.6726 48 1 5.9371 3.0067 2.4570 49 1 6.3559 1.5393 3.3737 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449527784.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:25 Heat of formation + Delta-G solvation = -72.171205 kcal Electronic energy + Delta-G solvation = -27705.632243 eV Core-core repulsion = 24181.026896 eV Total energy + Delta-G solvation = -3524.605347 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.82305 -38.03182 -37.50401 -36.67357 -34.72287 -34.14611 -32.89526 -30.40894 -28.88588 -28.67956 -27.84419 -27.15008 -24.97268 -23.52425 -22.50590 -20.84225 -19.80116 -19.14665 -18.25458 -17.49110 -17.22212 -17.00692 -16.54764 -16.22172 -15.94440 -15.78697 -15.12226 -14.88900 -14.57518 -14.39318 -14.21679 -13.91359 -13.87685 -13.78014 -13.66761 -13.47534 -13.17755 -13.01408 -12.99264 -12.83247 -12.62009 -12.51603 -12.29192 -12.13422 -12.01731 -11.92231 -11.83831 -11.56741 -11.51481 -11.31914 -11.12287 -11.06328 -10.76468 -10.70690 -10.42894 -10.27740 -9.04804 -8.09737 -6.14524 -0.70093 1.42148 1.44056 1.51343 2.09949 2.46791 2.90542 2.95905 3.24118 3.36230 3.59453 3.78783 4.01229 4.12923 4.13727 4.19886 4.25120 4.33125 4.40035 4.44828 4.49715 4.57950 4.67749 4.71573 4.81999 4.85772 4.97645 4.98608 5.01402 5.06920 5.09085 5.15450 5.25623 5.28422 5.31721 5.43259 5.50622 5.53088 5.62730 5.72543 5.80050 5.98012 6.02761 6.22392 6.24845 6.34501 6.47947 6.99684 7.51600 9.02155 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016531 B = 0.004606 C = 0.003976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.334580 B = 6077.814971 C = 7039.891327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.049 4.049 3 C -0.095 4.095 4 C 0.040 3.960 5 C -0.510 4.510 6 H 0.060 0.940 7 C -0.001 4.001 8 N -0.936 5.936 9 Si 0.950 3.050 10 H -0.271 1.271 11 H -0.287 1.287 12 H -0.270 1.270 13 C 0.068 3.932 14 N -0.528 5.528 15 C 0.015 3.985 16 C -0.117 4.117 17 C -0.115 4.115 18 C -0.140 4.140 19 C 0.095 3.905 20 H 0.064 0.936 21 C -0.613 4.613 22 S 2.409 3.591 23 C -0.660 4.660 24 O -0.928 6.928 25 O -0.979 6.979 26 H 0.074 0.926 27 H 0.038 0.962 28 H 0.043 0.957 29 H 0.035 0.965 30 H 0.013 0.987 31 H 0.092 0.908 32 H -0.011 1.011 33 H -0.017 1.017 34 H 0.259 0.741 35 H 0.076 0.924 36 H 0.023 0.977 37 H 0.110 0.890 38 H 0.029 0.971 39 H 0.060 0.940 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.090 0.910 44 H 0.066 0.934 45 H 0.166 0.834 46 H 0.144 0.856 47 H 0.136 0.864 48 H 0.131 0.869 49 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.567 2.840 20.021 20.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.050 4.050 3 C -0.153 4.153 4 C 0.003 3.997 5 C -0.548 4.548 6 H 0.078 0.922 7 C -0.198 4.198 8 N -0.578 5.578 9 Si 0.776 3.224 10 H -0.196 1.196 11 H -0.212 1.212 12 H -0.196 1.196 13 C -0.059 4.059 14 N -0.253 5.253 15 C -0.112 4.112 16 C -0.155 4.155 17 C -0.152 4.152 18 C -0.178 4.178 19 C -0.014 4.014 20 H 0.082 0.918 21 C -0.742 4.742 22 S 2.594 3.406 23 C -0.811 4.811 24 O -0.925 6.925 25 O -0.976 6.976 26 H 0.093 0.907 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.032 0.968 31 H 0.110 0.890 32 H 0.008 0.992 33 H 0.001 0.999 34 H 0.067 0.933 35 H 0.094 0.906 36 H 0.041 0.959 37 H 0.127 0.873 38 H 0.048 0.952 39 H 0.079 0.921 40 H 0.099 0.901 41 H 0.093 0.907 42 H 0.087 0.913 43 H 0.109 0.891 44 H 0.085 0.915 45 H 0.184 0.816 46 H 0.162 0.838 47 H 0.154 0.846 48 H 0.150 0.850 49 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 2.047 3.909 19.991 20.472 hybrid contribution 0.595 -1.444 -1.358 2.069 sum 2.642 2.466 18.633 18.980 Atomic orbital electron populations 1.22105 0.95867 1.00015 1.00683 1.20450 0.95270 0.96680 0.92609 1.21682 0.99437 0.94315 0.99879 1.19023 0.94264 0.93795 0.92628 1.21590 1.29946 1.11628 0.91636 0.92169 1.25824 0.95844 0.95912 1.02200 1.70081 1.38972 1.24874 1.23897 0.85725 0.78897 0.78829 0.78946 1.19622 1.21213 1.19552 1.22221 0.99631 0.94380 0.89703 1.61951 1.02586 1.58876 1.01880 1.23079 0.89421 0.97126 1.01566 1.21621 0.99427 1.00377 0.94093 1.21535 0.93938 1.01928 0.97835 1.22106 0.98226 1.00268 0.97221 1.21325 0.88943 0.99761 0.91357 0.91789 1.30520 1.04440 1.25989 1.13243 1.08259 0.78391 0.78691 0.75271 1.30295 1.24365 1.12537 1.13870 1.93752 1.63387 1.80172 1.55167 1.93518 1.86237 1.75038 1.42820 0.90738 0.94267 0.93836 0.94631 0.96805 0.88961 0.99242 0.99874 0.93267 0.90582 0.95857 0.87266 0.95235 0.92149 0.90132 0.90653 0.91286 0.89121 0.91541 0.81619 0.83842 0.84567 0.85020 0.83323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.97 6.65 71.98 0.48 -4.49 16 2 C -0.05 -2.01 0.60 -52.18 -0.03 -2.04 16 3 C -0.09 -3.91 6.37 71.98 0.46 -3.45 16 4 C 0.04 2.09 4.04 29.85 0.12 2.21 16 5 C -0.51 -28.67 7.45 25.60 0.19 -28.48 16 6 H 0.06 3.33 5.78 -2.91 -0.02 3.31 16 7 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 8 N -0.94 -57.01 13.29 21.45 0.28 -56.72 16 9 Si 0.95 45.12 29.54 68.60 2.03 47.14 16 10 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 11 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 12 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 13 C 0.07 2.25 3.99 86.30 0.34 2.60 16 14 N -0.53 -14.66 2.57 -871.10 -2.24 -16.90 16 15 C 0.01 0.38 4.66 86.33 0.40 0.78 16 16 C -0.12 -2.56 6.09 30.65 0.19 -2.37 16 17 C -0.11 -2.19 6.00 30.67 0.18 -2.00 16 18 C -0.14 -2.97 4.58 30.65 0.14 -2.83 16 19 C 0.10 2.10 2.14 44.94 0.10 2.20 16 20 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 21 C -0.61 -10.72 5.35 71.98 0.38 -10.34 16 22 S 2.41 51.49 4.58 -56.49 -0.26 51.24 16 23 C -0.66 -9.47 10.62 113.37 1.20 -8.27 16 24 O -0.93 -27.78 11.66 -127.37 -1.49 -29.27 16 25 O -0.98 -25.47 15.73 -127.37 -2.00 -27.47 16 26 H 0.07 2.52 5.99 -2.39 -0.01 2.50 16 27 H 0.04 1.67 6.29 -2.39 -0.02 1.66 16 28 H 0.04 1.56 7.28 -2.38 -0.02 1.54 16 29 H 0.03 1.42 7.25 -2.39 -0.02 1.40 16 30 H 0.01 0.60 6.62 -2.39 -0.02 0.58 16 31 H 0.09 3.62 5.36 -2.39 -0.01 3.60 16 32 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 33 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 34 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 35 H 0.08 2.32 5.10 -2.39 -0.01 2.30 16 36 H 0.02 0.79 7.98 -2.38 -0.02 0.77 16 37 H 0.11 3.09 2.99 -2.39 -0.01 3.08 16 38 H 0.03 0.74 8.14 -2.38 -0.02 0.72 16 39 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 41 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.07 1.68 5.46 -2.39 -0.01 1.67 16 45 H 0.17 1.59 8.14 -2.39 -0.02 1.57 16 46 H 0.14 2.45 5.54 -2.39 -0.01 2.44 16 47 H 0.14 1.83 8.14 -2.39 -0.02 1.81 16 48 H 0.13 1.81 8.14 -2.39 -0.02 1.79 16 49 H 0.15 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -73.38 358.47 1.87 -71.51 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: 0.92 Total: 16.58 kcal Atomic # 6 Polarization: -60.72 SS G_CDS: 4.62 Total: -56.10 kcal Atomic # 7 Polarization: -71.67 SS G_CDS: -1.95 Total: -73.62 kcal Atomic # 8 Polarization: -53.25 SS G_CDS: -3.49 Total: -56.74 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Atomic # 16 Polarization: 51.49 SS G_CDS: -0.26 Total: 51.24 kcal Total: -73.38 1.87 -71.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449527784.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.662 kcal (2) G-P(sol) polarization free energy of solvation -73.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds