Wall clock time and date at job start Tue Mar 31 2020 11:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.47235 * 2 1 4 4 C 1.53000 * 109.46977 * 120.00033 * 2 1 3 5 5 C 1.50700 * 109.47285 * 299.99791 * 4 2 1 6 6 H 1.08002 * 119.99887 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00191 * 179.97438 * 5 4 2 8 8 N 1.31514 * 120.00054 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 120.00219 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46589 * 90.00202 * 9 7 5 11 11 H 1.48495 * 109.47134 * 210.00240 * 9 7 5 12 12 H 1.48497 * 109.46912 * 330.00866 * 9 7 5 13 13 C 1.52995 * 109.47017 * 239.99858 * 2 1 3 14 14 N 1.46900 * 109.47263 * 79.99668 * 13 2 1 15 15 C 1.46852 * 110.99903 * 75.20016 * 14 13 2 16 16 C 1.53038 * 109.52481 * 174.16361 * 15 14 13 17 17 C 1.53120 * 109.27634 * 59.17679 * 16 15 14 18 18 C 1.53114 * 109.16126 * 302.34783 * 17 16 15 19 19 C 1.46846 * 111.00113 * 310.99147 * 14 13 2 20 20 H 1.09007 * 109.46022 * 65.81816 * 19 14 13 21 21 C 1.52994 * 109.46188 * 305.85468 * 19 14 13 22 22 S 1.81398 * 109.47155 * 293.13560 * 21 19 14 23 23 C 1.81395 * 101.92341 * 176.57047 * 22 21 19 24 24 O 1.42098 * 108.58032 * 291.05989 * 22 21 19 25 25 O 1.42104 * 108.57760 * 62.08363 * 22 21 19 26 26 H 1.09000 * 109.46995 * 48.86443 * 1 2 3 27 27 H 1.09000 * 109.47193 * 288.86618 * 1 2 3 28 28 H 1.09000 * 109.47124 * 168.86911 * 1 2 3 29 29 H 1.09003 * 109.47467 * 66.46244 * 3 2 1 30 30 H 1.09001 * 109.47506 * 186.45899 * 3 2 1 31 31 H 1.09001 * 109.47716 * 306.46020 * 3 2 1 32 32 H 1.08998 * 109.47339 * 59.99890 * 4 2 1 33 33 H 1.09001 * 109.47415 * 180.02562 * 4 2 1 34 34 H 0.97005 * 120.00265 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.47112 * 199.99678 * 13 2 1 36 36 H 1.09000 * 109.47692 * 319.99695 * 13 2 1 37 37 H 1.09004 * 109.46397 * 294.17991 * 15 14 13 38 38 H 1.09003 * 109.46108 * 54.14492 * 15 14 13 39 39 H 1.08994 * 109.50514 * 179.12077 * 16 15 14 40 40 H 1.08997 * 109.49818 * 299.19930 * 16 15 14 41 41 H 1.08998 * 109.52298 * 62.25329 * 17 16 15 42 42 H 1.09000 * 109.51511 * 182.37771 * 17 16 15 43 43 H 1.09004 * 109.49928 * 177.59972 * 18 17 16 44 44 H 1.09003 * 109.50278 * 297.71369 * 18 17 16 45 45 H 1.09004 * 109.47592 * 53.13579 * 21 19 14 46 46 H 1.09000 * 109.47191 * 173.13436 * 21 19 14 47 47 H 1.09003 * 109.47389 * 59.99874 * 23 22 21 48 48 H 1.08999 * 109.47493 * 179.97438 * 23 22 21 49 49 H 1.09002 * 109.47596 * 300.00244 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5377 -0.0109 2.4797 6 1 0.9164 0.8670 2.3806 7 6 1.8703 -0.4822 3.7320 8 7 2.6263 -1.5515 3.8527 9 14 1.2483 0.3988 5.2573 10 1 -0.0604 -0.1753 5.6613 11 1 2.2262 0.2272 6.3614 12 1 1.0843 1.8447 4.9614 13 6 2.0399 -0.7213 -1.2492 14 7 1.9764 0.1890 -2.4005 15 6 3.0551 1.1838 -2.3450 16 6 3.0468 2.0193 -3.6271 17 6 1.6908 2.7166 -3.7673 18 6 0.5814 1.6613 -3.7739 19 6 0.6611 0.8362 -2.4876 20 1 0.5206 1.4905 -1.6271 21 6 -0.4333 -0.2328 -2.4989 22 16 -0.3228 -1.1951 -4.0326 23 6 -1.6163 -2.4427 -3.7863 24 8 -0.7000 -0.3604 -5.1190 25 8 0.9377 -1.8503 -4.0662 26 1 -0.3633 0.6760 -0.7740 27 1 -0.3633 0.3323 0.9725 28 1 -0.3633 -1.0083 -0.1984 29 1 1.7742 1.9218 0.9422 30 1 3.1239 1.4446 -0.1156 31 1 1.5854 1.9886 -0.8265 32 1 1.6766 -1.7489 1.2493 33 1 3.1300 -0.7209 1.2496 34 1 2.8607 -1.8830 4.7337 35 1 3.0715 -1.0359 -1.0914 36 1 1.4189 -1.5959 -1.4428 37 1 2.9034 1.8365 -1.4852 38 1 4.0142 0.6746 -2.2494 39 1 3.8376 2.7678 -3.5789 40 1 3.2129 1.3693 -4.4861 41 1 1.5421 3.3961 -2.9282 42 1 1.6654 3.2791 -4.7006 43 1 -0.3892 2.1541 -3.8306 44 1 0.7080 1.0055 -4.6353 45 1 -0.3025 -0.8959 -1.6437 46 1 -1.4104 0.2469 -2.4405 47 1 -2.5793 -1.9478 -3.6603 48 1 -1.6570 -3.1003 -4.6546 49 1 -1.3903 -3.0296 -2.8960 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449527785.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:30 Heat of formation + Delta-G solvation = -6.060269 kcal Electronic energy + Delta-G solvation = -27920.757755 eV Core-core repulsion = 24399.019193 eV Total energy + Delta-G solvation = -3521.738562 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.81052 -36.82401 -36.10580 -35.69890 -33.37344 -32.85310 -31.54242 -29.75366 -27.97779 -27.56494 -26.91680 -25.40938 -23.33772 -22.41400 -21.46229 -19.76087 -18.67674 -18.00760 -16.70456 -16.41228 -16.14072 -15.88054 -15.22631 -15.14179 -14.91098 -14.36944 -14.13386 -14.02187 -13.42459 -13.26033 -13.18060 -13.16145 -12.56866 -12.43896 -12.17070 -12.10819 -11.98780 -11.88287 -11.72870 -11.66722 -11.19295 -11.10215 -10.96038 -10.81530 -10.78588 -10.63463 -10.55632 -10.37140 -10.23113 -10.07050 -9.99034 -9.83825 -9.57675 -9.30445 -8.99121 -8.39285 -7.47423 -6.03118 -4.04385 0.12797 2.91463 3.26539 3.34238 3.35763 3.77267 4.02993 4.24058 4.41413 4.59980 4.68601 4.72689 4.94100 5.04777 5.21385 5.24844 5.30372 5.32462 5.41826 5.53629 5.56127 5.57618 5.69845 5.79783 5.83796 5.92587 5.99673 6.05412 6.06884 6.16720 6.21495 6.25983 6.30899 6.33170 6.36925 6.50698 6.57062 6.66842 6.99774 7.00156 7.13947 7.42374 7.52293 7.62820 7.75788 7.95759 8.38996 9.00782 9.58832 11.07832 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017274 B = 0.004504 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.579844 B = 6214.577427 C = 7010.436620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.092 4.092 3 C -0.153 4.153 4 C 0.036 3.964 5 C -0.511 4.511 6 H 0.058 0.942 7 C 0.057 3.943 8 N -0.895 5.895 9 Si 0.886 3.114 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.275 1.275 13 C 0.060 3.940 14 N -0.525 5.525 15 C 0.007 3.993 16 C -0.120 4.120 17 C -0.116 4.116 18 C -0.143 4.143 19 C 0.081 3.919 20 H 0.097 0.903 21 C -0.629 4.629 22 S 2.419 3.581 23 C -0.672 4.672 24 O -0.951 6.951 25 O -0.912 6.912 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.047 0.953 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.016 0.984 33 H 0.016 0.984 34 H 0.259 0.741 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.090 0.910 38 H 0.072 0.928 39 H 0.062 0.938 40 H 0.066 0.934 41 H 0.059 0.941 42 H 0.062 0.938 43 H 0.072 0.928 44 H 0.083 0.917 45 H 0.166 0.834 46 H 0.131 0.869 47 H 0.123 0.877 48 H 0.123 0.877 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.645 3.831 -15.034 16.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.094 4.094 3 C -0.209 4.209 4 C -0.002 4.002 5 C -0.549 4.549 6 H 0.076 0.924 7 C -0.144 4.144 8 N -0.534 5.534 9 Si 0.714 3.286 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.200 1.200 13 C -0.067 4.067 14 N -0.249 5.249 15 C -0.119 4.119 16 C -0.158 4.158 17 C -0.153 4.153 18 C -0.181 4.181 19 C -0.028 4.028 20 H 0.114 0.886 21 C -0.758 4.758 22 S 2.600 3.400 23 C -0.819 4.819 24 O -0.948 6.948 25 O -0.909 6.909 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.066 0.934 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.034 0.966 33 H 0.034 0.966 34 H 0.069 0.931 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.107 0.893 38 H 0.091 0.909 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.091 0.909 44 H 0.101 0.899 45 H 0.184 0.816 46 H 0.150 0.850 47 H 0.141 0.859 48 H 0.142 0.858 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.938 3.521 -16.079 17.498 hybrid contribution -1.081 0.503 2.456 2.730 sum -7.018 4.024 -13.623 15.844 Atomic orbital electron populations 1.22921 0.96444 0.99675 1.02880 1.21256 0.95045 0.95694 0.97380 1.22599 1.00219 0.96847 1.01198 1.19099 0.96125 0.95078 0.89852 1.21221 1.31022 1.11981 0.90715 0.92436 1.25008 0.95336 0.95081 0.99018 1.69960 1.36964 1.23094 1.23379 0.86691 0.78570 0.80050 0.83240 1.20832 1.21325 1.20023 1.22437 1.02275 0.94784 0.87240 1.62270 1.01280 1.18825 1.42537 1.23230 0.94660 0.95169 0.98864 1.21640 0.96589 0.98589 0.98995 1.21503 0.94946 0.97353 1.01538 1.22153 0.99402 0.98767 0.97758 1.21852 0.88054 0.93298 0.99585 0.88611 1.31101 1.07238 1.13917 1.23546 1.08097 0.76602 0.77248 0.78068 1.30442 1.20178 1.19515 1.11812 1.93550 1.84515 1.66221 1.50503 1.93625 1.36754 1.74437 1.86069 0.91710 0.91424 0.93434 0.91635 0.92323 0.92958 0.96611 0.96573 0.93078 0.90617 0.91312 0.89287 0.90927 0.91914 0.91543 0.92198 0.91941 0.90917 0.89902 0.81643 0.85035 0.85856 0.85839 0.85422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.63 6.61 37.16 0.25 -2.38 16 2 C -0.09 -1.66 0.52 -154.51 -0.08 -1.74 16 3 C -0.15 -2.60 6.21 37.15 0.23 -2.37 16 4 C 0.04 0.85 3.95 -27.88 -0.11 0.74 16 5 C -0.51 -13.27 7.41 -34.44 -0.26 -13.52 16 6 H 0.06 1.45 5.77 -52.49 -0.30 1.15 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.89 -25.99 13.29 55.43 0.74 -25.26 16 9 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 C 0.06 1.00 4.76 -3.83 -0.02 0.98 16 14 N -0.53 -7.80 3.63 -226.69 -0.82 -8.62 16 15 C 0.01 0.10 4.45 -3.83 -0.02 0.09 16 16 C -0.12 -1.47 6.09 -26.65 -0.16 -1.63 16 17 C -0.12 -1.33 6.00 -26.61 -0.16 -1.49 16 18 C -0.14 -1.78 4.57 -26.66 -0.12 -1.90 16 19 C 0.08 1.06 1.23 -67.73 -0.08 0.97 16 20 H 0.10 1.28 3.09 -51.93 -0.16 1.12 16 21 C -0.63 -6.91 3.43 37.15 0.13 -6.78 16 22 S 2.42 28.05 4.67 -107.50 -0.50 27.55 16 23 C -0.67 -5.39 10.62 101.05 1.07 -4.31 16 24 O -0.95 -13.19 15.49 -57.83 -0.90 -14.09 16 25 O -0.91 -14.08 16.95 -57.83 -0.98 -15.06 16 26 H 0.06 0.86 3.29 -51.93 -0.17 0.69 16 27 H 0.07 1.24 6.33 -51.93 -0.33 0.91 16 28 H 0.05 0.70 6.25 -51.93 -0.32 0.38 16 29 H 0.06 1.25 6.43 -51.93 -0.33 0.91 16 30 H 0.06 1.00 6.33 -51.93 -0.33 0.67 16 31 H 0.05 0.77 3.65 -51.93 -0.19 0.58 16 32 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.02 0.42 8.13 -51.93 -0.42 -0.01 16 34 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 35 H 0.08 1.35 7.72 -51.93 -0.40 0.95 16 36 H 0.07 1.10 6.42 -51.93 -0.33 0.77 16 37 H 0.09 1.25 3.04 -57.14 -0.17 1.07 16 38 H 0.07 1.04 7.96 -51.93 -0.41 0.62 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.08 1.16 5.33 -51.93 -0.28 0.88 16 45 H 0.17 1.87 2.76 -51.92 -0.14 1.73 16 46 H 0.13 1.01 8.04 -51.92 -0.42 0.60 16 47 H 0.12 0.73 8.14 -51.92 -0.42 0.30 16 48 H 0.12 0.90 8.14 -51.92 -0.42 0.47 16 49 H 0.13 0.89 8.14 -51.92 -0.42 0.47 16 LS Contribution 348.34 15.07 5.25 5.25 Total: -1.00 -32.88 348.34 -9.33 -42.21 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -7.66 Total: 4.01 kcal Atomic # 6 Polarization: -32.47 SS G_CDS: 0.57 Total: -31.90 kcal Atomic # 7 Polarization: -33.79 SS G_CDS: -0.09 Total: -33.88 kcal Atomic # 8 Polarization: -27.27 SS G_CDS: -1.88 Total: -29.14 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 28.05 SS G_CDS: -0.50 Total: 27.55 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.88 -9.33 -42.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449527785.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.146 kcal (2) G-P(sol) polarization free energy of solvation -32.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds