Wall clock time and date at job start Tue Mar 31 2020 11:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.47235 * 2 1 4 4 C 1.53000 * 109.46977 * 120.00033 * 2 1 3 5 5 C 1.50700 * 109.47285 * 299.99791 * 4 2 1 6 6 H 1.08002 * 119.99887 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00191 * 179.97438 * 5 4 2 8 8 N 1.31514 * 120.00054 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 120.00219 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46589 * 90.00202 * 9 7 5 11 11 H 1.48495 * 109.47134 * 210.00240 * 9 7 5 12 12 H 1.48497 * 109.46912 * 330.00866 * 9 7 5 13 13 C 1.52995 * 109.47017 * 239.99858 * 2 1 3 14 14 N 1.46900 * 109.47263 * 79.99668 * 13 2 1 15 15 C 1.46852 * 110.99903 * 75.20016 * 14 13 2 16 16 C 1.53038 * 109.52481 * 174.16361 * 15 14 13 17 17 C 1.53120 * 109.27634 * 59.17679 * 16 15 14 18 18 C 1.53114 * 109.16126 * 302.34783 * 17 16 15 19 19 C 1.46846 * 111.00113 * 310.99147 * 14 13 2 20 20 H 1.09007 * 109.46022 * 65.81816 * 19 14 13 21 21 C 1.52994 * 109.46188 * 305.85468 * 19 14 13 22 22 S 1.81398 * 109.47155 * 293.13560 * 21 19 14 23 23 C 1.81395 * 101.92341 * 176.57047 * 22 21 19 24 24 O 1.42098 * 108.58032 * 291.05989 * 22 21 19 25 25 O 1.42104 * 108.57760 * 62.08363 * 22 21 19 26 26 H 1.09000 * 109.46995 * 48.86443 * 1 2 3 27 27 H 1.09000 * 109.47193 * 288.86618 * 1 2 3 28 28 H 1.09000 * 109.47124 * 168.86911 * 1 2 3 29 29 H 1.09003 * 109.47467 * 66.46244 * 3 2 1 30 30 H 1.09001 * 109.47506 * 186.45899 * 3 2 1 31 31 H 1.09001 * 109.47716 * 306.46020 * 3 2 1 32 32 H 1.08998 * 109.47339 * 59.99890 * 4 2 1 33 33 H 1.09001 * 109.47415 * 180.02562 * 4 2 1 34 34 H 0.97005 * 120.00265 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.47112 * 199.99678 * 13 2 1 36 36 H 1.09000 * 109.47692 * 319.99695 * 13 2 1 37 37 H 1.09004 * 109.46397 * 294.17991 * 15 14 13 38 38 H 1.09003 * 109.46108 * 54.14492 * 15 14 13 39 39 H 1.08994 * 109.50514 * 179.12077 * 16 15 14 40 40 H 1.08997 * 109.49818 * 299.19930 * 16 15 14 41 41 H 1.08998 * 109.52298 * 62.25329 * 17 16 15 42 42 H 1.09000 * 109.51511 * 182.37771 * 17 16 15 43 43 H 1.09004 * 109.49928 * 177.59972 * 18 17 16 44 44 H 1.09003 * 109.50278 * 297.71369 * 18 17 16 45 45 H 1.09004 * 109.47592 * 53.13579 * 21 19 14 46 46 H 1.09000 * 109.47191 * 173.13436 * 21 19 14 47 47 H 1.09003 * 109.47389 * 59.99874 * 23 22 21 48 48 H 1.08999 * 109.47493 * 179.97438 * 23 22 21 49 49 H 1.09002 * 109.47596 * 300.00244 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5377 -0.0109 2.4797 6 1 0.9164 0.8670 2.3806 7 6 1.8703 -0.4822 3.7320 8 7 2.6263 -1.5515 3.8527 9 14 1.2483 0.3988 5.2573 10 1 -0.0604 -0.1753 5.6613 11 1 2.2262 0.2272 6.3614 12 1 1.0843 1.8447 4.9614 13 6 2.0399 -0.7213 -1.2492 14 7 1.9764 0.1890 -2.4005 15 6 3.0551 1.1838 -2.3450 16 6 3.0468 2.0193 -3.6271 17 6 1.6908 2.7166 -3.7673 18 6 0.5814 1.6613 -3.7739 19 6 0.6611 0.8362 -2.4876 20 1 0.5206 1.4905 -1.6271 21 6 -0.4333 -0.2328 -2.4989 22 16 -0.3228 -1.1951 -4.0326 23 6 -1.6163 -2.4427 -3.7863 24 8 -0.7000 -0.3604 -5.1190 25 8 0.9377 -1.8503 -4.0662 26 1 -0.3633 0.6760 -0.7740 27 1 -0.3633 0.3323 0.9725 28 1 -0.3633 -1.0083 -0.1984 29 1 1.7742 1.9218 0.9422 30 1 3.1239 1.4446 -0.1156 31 1 1.5854 1.9886 -0.8265 32 1 1.6766 -1.7489 1.2493 33 1 3.1300 -0.7209 1.2496 34 1 2.8607 -1.8830 4.7337 35 1 3.0715 -1.0359 -1.0914 36 1 1.4189 -1.5959 -1.4428 37 1 2.9034 1.8365 -1.4852 38 1 4.0142 0.6746 -2.2494 39 1 3.8376 2.7678 -3.5789 40 1 3.2129 1.3693 -4.4861 41 1 1.5421 3.3961 -2.9282 42 1 1.6654 3.2791 -4.7006 43 1 -0.3892 2.1541 -3.8306 44 1 0.7080 1.0055 -4.6353 45 1 -0.3025 -0.8959 -1.6437 46 1 -1.4104 0.2469 -2.4405 47 1 -2.5793 -1.9478 -3.6603 48 1 -1.6570 -3.1003 -4.6546 49 1 -1.3903 -3.0296 -2.8960 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449527785.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:29 Heat of formation + Delta-G solvation = -29.062018 kcal Electronic energy + Delta-G solvation = -27921.755185 eV Core-core repulsion = 24399.019193 eV Total energy + Delta-G solvation = -3522.735992 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.01918 -37.82005 -37.38155 -36.71505 -34.86679 -34.15923 -33.01911 -30.45355 -29.26655 -28.83782 -28.55604 -26.62593 -24.98427 -23.62628 -22.61678 -20.85840 -19.82624 -19.26887 -18.28751 -17.67885 -17.16025 -16.88074 -16.65116 -16.27534 -16.13481 -15.91414 -15.27384 -15.07504 -14.65397 -14.51012 -14.04425 -13.94756 -13.86759 -13.69617 -13.64249 -13.37367 -13.07000 -12.99411 -12.96258 -12.75152 -12.70240 -12.60236 -12.42143 -12.33306 -12.00470 -11.97118 -11.81197 -11.71328 -11.48547 -11.31535 -11.24645 -11.02473 -10.93881 -10.80184 -10.62080 -10.48936 -8.72192 -8.12412 -6.20388 -0.71981 1.39857 1.41009 1.50562 2.09541 2.43032 2.92900 3.01205 3.20707 3.34842 3.65508 3.80428 4.01517 4.08989 4.13121 4.16301 4.20988 4.24149 4.30794 4.32853 4.48307 4.57108 4.70387 4.75426 4.79191 4.84493 4.90547 4.93056 4.98026 5.01659 5.02417 5.06783 5.14101 5.14664 5.27001 5.30586 5.35323 5.47970 5.51193 5.54797 5.63556 5.64411 5.84165 5.93693 6.26309 6.30303 6.36207 6.95200 7.47034 8.98467 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017274 B = 0.004504 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.579844 B = 6214.577427 C = 7010.436620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.085 4.085 3 C -0.147 4.147 4 C 0.042 3.958 5 C -0.511 4.511 6 H 0.067 0.933 7 C -0.003 4.003 8 N -0.937 5.937 9 Si 0.953 3.047 10 H -0.275 1.275 11 H -0.291 1.291 12 H -0.263 1.263 13 C 0.068 3.932 14 N -0.529 5.529 15 C 0.002 3.998 16 C -0.117 4.117 17 C -0.117 4.117 18 C -0.145 4.145 19 C 0.074 3.926 20 H 0.097 0.903 21 C -0.633 4.633 22 S 2.418 3.582 23 C -0.657 4.657 24 O -0.978 6.978 25 O -0.963 6.963 26 H 0.101 0.899 27 H 0.045 0.955 28 H 0.061 0.939 29 H 0.045 0.955 30 H 0.051 0.949 31 H 0.084 0.916 32 H -0.012 1.012 33 H -0.020 1.020 34 H 0.258 0.742 35 H 0.052 0.948 36 H 0.074 0.926 37 H 0.091 0.909 38 H 0.059 0.941 39 H 0.079 0.921 40 H 0.053 0.947 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.093 0.907 44 H 0.066 0.934 45 H 0.164 0.836 46 H 0.174 0.826 47 H 0.154 0.846 48 H 0.133 0.867 49 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.386 5.443 -15.667 19.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.086 4.086 3 C -0.203 4.203 4 C 0.004 3.996 5 C -0.549 4.549 6 H 0.085 0.915 7 C -0.200 4.200 8 N -0.579 5.579 9 Si 0.779 3.221 10 H -0.201 1.201 11 H -0.217 1.217 12 H -0.188 1.188 13 C -0.061 4.061 14 N -0.253 5.253 15 C -0.124 4.124 16 C -0.155 4.155 17 C -0.154 4.154 18 C -0.182 4.182 19 C -0.035 4.035 20 H 0.114 0.886 21 C -0.763 4.763 22 S 2.603 3.397 23 C -0.808 4.808 24 O -0.975 6.975 25 O -0.960 6.960 26 H 0.119 0.881 27 H 0.064 0.936 28 H 0.080 0.920 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.102 0.898 32 H 0.007 0.993 33 H -0.002 1.002 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.108 0.892 38 H 0.077 0.923 39 H 0.098 0.902 40 H 0.072 0.928 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.112 0.888 44 H 0.085 0.915 45 H 0.181 0.819 46 H 0.191 0.809 47 H 0.172 0.828 48 H 0.152 0.848 49 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -8.659 5.172 -16.740 19.544 hybrid contribution -0.239 -0.052 2.596 2.608 sum -8.898 5.121 -14.144 17.477 Atomic orbital electron populations 1.22983 0.94353 1.01606 1.02898 1.21135 0.96763 0.95679 0.95064 1.22589 1.00120 0.96233 1.01341 1.18984 0.93823 0.94263 0.92529 1.21616 1.30071 1.11836 0.91358 0.91468 1.25886 0.95758 0.95871 1.02475 1.70111 1.38835 1.24999 1.23927 0.85626 0.77927 0.79365 0.79191 1.20067 1.21688 1.18771 1.22252 1.00888 0.95478 0.87442 1.62291 1.02714 1.19326 1.40963 1.23271 0.94025 0.95086 1.00042 1.21621 0.98105 0.98522 0.97220 1.21546 0.93800 0.97264 1.02788 1.22194 1.00860 0.98690 0.96505 1.21973 0.87477 0.93984 1.00022 0.88565 1.31127 1.08673 1.13671 1.22796 1.07756 0.76617 0.77493 0.77788 1.30273 1.19350 1.18188 1.13027 1.93513 1.84849 1.67421 1.51746 1.93571 1.40359 1.75340 1.86750 0.88105 0.93594 0.92034 0.93601 0.92987 0.89811 0.99344 1.00165 0.93275 0.92982 0.90790 0.89179 0.92282 0.90212 0.92845 0.91031 0.90572 0.88821 0.91516 0.81872 0.80863 0.82812 0.84846 0.84032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.92 6.61 71.98 0.48 -4.45 16 2 C -0.08 -3.06 0.52 -52.19 -0.03 -3.09 16 3 C -0.15 -4.92 6.21 71.98 0.45 -4.48 16 4 C 0.04 2.05 3.95 29.85 0.12 2.17 16 5 C -0.51 -26.87 7.41 25.60 0.19 -26.68 16 6 H 0.07 3.35 5.77 -2.91 -0.02 3.34 16 7 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 8 N -0.94 -56.17 13.29 21.45 0.28 -55.89 16 9 Si 0.95 43.12 29.54 68.60 2.03 45.15 16 10 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 11 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 12 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 13 C 0.07 2.29 4.76 86.30 0.41 2.70 16 14 N -0.53 -15.46 3.63 -871.12 -3.16 -18.62 16 15 C 0.00 0.07 4.45 86.33 0.38 0.45 16 16 C -0.12 -2.71 6.09 30.65 0.19 -2.53 16 17 C -0.12 -2.37 6.00 30.67 0.18 -2.19 16 18 C -0.14 -3.22 4.57 30.64 0.14 -3.08 16 19 C 0.07 1.75 1.23 44.93 0.06 1.80 16 20 H 0.10 2.24 3.09 -2.38 -0.01 2.23 16 21 C -0.63 -11.95 3.43 71.98 0.25 -11.70 16 22 S 2.42 51.66 4.67 -56.49 -0.26 51.40 16 23 C -0.66 -8.19 10.62 113.37 1.20 -6.99 16 24 O -0.98 -25.46 15.49 -127.37 -1.97 -27.44 16 25 O -0.96 -29.71 16.95 -127.37 -2.16 -31.87 16 26 H 0.10 2.32 3.29 -2.39 -0.01 2.31 16 27 H 0.05 1.60 6.33 -2.39 -0.02 1.59 16 28 H 0.06 1.69 6.25 -2.39 -0.01 1.67 16 29 H 0.04 1.71 6.43 -2.39 -0.02 1.69 16 30 H 0.05 1.79 6.33 -2.39 -0.02 1.78 16 31 H 0.08 2.28 3.65 -2.39 -0.01 2.27 16 32 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 33 H -0.02 -1.12 8.13 -2.39 -0.02 -1.14 16 34 H 0.26 14.75 8.31 -92.70 -0.77 13.98 16 35 H 0.05 1.98 7.72 -2.39 -0.02 1.96 16 36 H 0.07 2.40 6.42 -2.39 -0.02 2.38 16 37 H 0.09 2.45 3.04 -7.28 -0.02 2.43 16 38 H 0.06 1.76 7.96 -2.39 -0.02 1.74 16 39 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 44 H 0.07 1.76 5.33 -2.39 -0.01 1.75 16 45 H 0.16 3.23 2.76 -2.39 -0.01 3.22 16 46 H 0.17 1.78 8.04 -2.39 -0.02 1.76 16 47 H 0.15 1.03 8.14 -2.39 -0.02 1.02 16 48 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 49 H 0.14 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -74.24 348.34 0.17 -74.07 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: 0.94 Total: 20.97 kcal Atomic # 6 Polarization: -62.25 SS G_CDS: 4.48 Total: -57.77 kcal Atomic # 7 Polarization: -71.63 SS G_CDS: -2.88 Total: -74.51 kcal Atomic # 8 Polarization: -55.17 SS G_CDS: -4.13 Total: -59.31 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Atomic # 16 Polarization: 51.66 SS G_CDS: -0.26 Total: 51.40 kcal Total: -74.24 0.17 -74.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449527785.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.006 kcal (2) G-P(sol) polarization free energy of solvation -74.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds