Wall clock time and date at job start Tue Mar 31 2020 11:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47366 * 2 1 4 4 C 1.52992 * 109.47105 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.47105 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.46775 * 305.00631 * 5 4 3 7 7 C 1.52994 * 109.46924 * 65.00052 * 5 4 3 8 8 C 1.53005 * 109.46732 * 61.98949 * 7 5 4 9 9 C 1.52998 * 109.47329 * 185.00705 * 5 4 3 10 10 N 1.46499 * 109.47107 * 179.82927 * 9 5 4 11 11 S 1.65595 * 119.99893 * 156.79814 * 10 9 5 12 12 O 1.42104 * 104.27803 * 181.07082 * 11 10 9 13 13 O 1.42094 * 104.28165 * 308.92751 * 11 10 9 14 14 C 1.81401 * 104.45292 * 65.00151 * 11 10 9 15 15 C 1.52999 * 109.47377 * 172.42179 * 14 11 10 16 16 C 1.50696 * 115.54994 * 57.63919 * 15 14 11 17 17 H 1.08002 * 119.99543 * 264.64614 * 16 15 14 18 18 C 1.37879 * 120.00408 * 84.64766 * 16 15 14 19 19 N 1.31520 * 119.99520 * 2.01990 * 18 16 15 20 20 Si 1.86795 * 120.00189 * 182.01960 * 18 16 15 21 21 H 1.48500 * 109.47176 * 90.00069 * 20 18 16 22 22 H 1.48503 * 109.47033 * 210.00351 * 20 18 16 23 23 H 1.48500 * 109.47311 * 329.99778 * 20 18 16 24 24 C 1.52996 * 117.49559 * 271.96668 * 15 14 11 25 25 C 1.53000 * 117.49476 * 203.30709 * 15 14 11 26 26 H 1.09000 * 109.47271 * 59.99805 * 1 2 3 27 27 H 1.08994 * 109.47395 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47647 * 300.00107 * 1 2 3 29 29 H 1.08997 * 109.47163 * 239.99977 * 2 1 3 30 30 H 1.09000 * 109.47271 * 120.00195 * 2 1 3 31 31 H 1.09006 * 109.46962 * 60.00100 * 3 2 1 32 32 H 1.09000 * 109.47085 * 300.00310 * 3 2 1 33 33 H 1.09006 * 109.46733 * 60.00444 * 4 3 2 34 34 H 1.09000 * 109.47798 * 300.00358 * 4 3 2 35 35 H 1.09005 * 109.47168 * 181.98354 * 7 5 4 36 36 H 1.08996 * 109.47773 * 301.98928 * 7 5 4 37 37 H 1.09005 * 109.46842 * 185.40654 * 8 7 5 38 38 H 1.08997 * 109.47196 * 305.40503 * 8 7 5 39 39 H 1.09006 * 109.46911 * 65.40855 * 8 7 5 40 40 H 1.09000 * 109.47068 * 299.82715 * 9 5 4 41 41 H 1.08997 * 109.47394 * 59.82523 * 9 5 4 42 42 H 0.96998 * 120.00158 * 336.79995 * 10 9 5 43 43 H 1.09009 * 109.46637 * 292.42519 * 14 11 10 44 44 H 1.09001 * 109.47038 * 52.41533 * 14 11 10 45 45 H 0.96996 * 119.99830 * 185.02044 * 19 18 16 46 46 H 1.09006 * 117.50144 * 359.97438 * 24 15 14 47 47 H 1.09003 * 117.49831 * 145.02409 * 24 15 14 48 48 H 1.09005 * 117.49825 * 214.97537 * 25 15 14 49 49 H 1.09000 * 117.50065 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4424 0.0006 5 6 4.0800 2.8850 0.0000 6 1 3.6456 3.4235 -0.8423 7 6 3.6747 3.5697 1.3067 8 6 4.3247 2.8432 2.4861 9 6 5.6049 2.8867 -0.1253 10 7 6.0929 4.2680 -0.1300 11 16 7.6531 4.5965 0.3173 12 8 7.7563 6.0102 0.2166 13 8 7.8053 3.9381 1.5673 14 6 8.6673 3.7921 -0.9535 15 6 10.1338 4.1815 -0.7577 16 6 10.7200 3.8495 0.5904 17 1 10.7424 4.5981 1.3686 18 6 11.2278 2.5903 0.8302 19 7 11.2368 1.6912 -0.1296 20 14 11.9029 2.1614 2.5183 21 1 10.8121 1.6113 3.3625 22 1 12.9793 1.1480 2.3780 23 1 12.4541 3.3838 3.1562 24 6 10.6242 5.4565 -1.4467 25 6 11.0584 4.0861 -1.9730 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.6767 1.9564 -0.8900 33 1 3.9336 0.9285 -0.8892 34 1 3.9330 0.9287 0.8908 35 1 4.0074 4.6077 1.2915 36 1 2.5904 3.5373 1.4130 37 1 3.9608 3.2699 3.4208 38 1 4.0689 1.7844 2.4461 39 1 5.4073 2.9579 2.4314 40 1 6.0393 2.3508 0.7186 41 1 5.8937 2.3961 -1.0548 42 1 5.5021 4.9902 -0.3951 43 1 8.5642 2.7101 -0.8695 44 1 8.3347 4.1131 -1.9407 45 1 11.5259 0.7845 0.0579 46 1 9.9021 6.0176 -2.0400 47 1 11.3712 6.0550 -0.9253 48 1 12.0908 3.7837 -1.7975 49 1 10.6219 3.7455 -2.9119 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451030530.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:21 Heat of formation + Delta-G solvation = -88.523265 kcal Electronic energy + Delta-G solvation = -25936.058107 eV Core-core repulsion = 22410.743681 eV Total energy + Delta-G solvation = -3525.314426 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -38.42449 -36.71924 -36.17649 -35.26300 -34.96198 -32.98011 -32.02209 -30.17121 -28.16724 -27.49619 -25.44314 -24.33721 -23.53050 -21.23652 -21.16381 -19.74461 -19.20057 -18.54781 -16.86349 -16.46000 -16.11361 -15.71782 -15.44627 -14.91318 -14.72419 -14.54083 -14.29501 -13.90273 -13.72412 -13.28719 -13.09894 -12.74021 -12.57696 -12.47162 -12.34391 -12.02417 -11.80012 -11.54453 -11.45190 -11.36425 -11.21017 -11.09178 -11.00069 -10.99032 -10.88678 -10.80886 -10.52999 -10.48023 -10.44397 -10.40618 -10.18217 -10.07633 -9.64875 -9.12983 -9.01172 -8.51091 -8.06086 -6.13170 -4.25717 1.13616 3.33603 3.39224 3.44214 3.54688 4.39992 4.47306 4.61914 4.68259 4.75998 4.88282 4.99536 5.00772 5.07078 5.16363 5.25672 5.26404 5.42651 5.45663 5.49108 5.55477 5.60728 5.66840 5.68895 5.70604 5.74119 5.83179 5.89238 5.97720 5.98086 6.06668 6.10734 6.18796 6.22795 6.28960 6.30810 6.37685 6.39463 6.58372 6.63816 6.74053 7.00828 7.22846 7.34194 7.45851 7.80088 8.20744 8.80877 9.47578 10.94386 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015633 B = 0.003595 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.634077 B = 7787.216112 C = 8306.471393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.119 4.119 4 C -0.120 4.120 5 C -0.093 4.093 6 H 0.074 0.926 7 C -0.118 4.118 8 C -0.166 4.166 9 C 0.117 3.883 10 N -1.132 6.132 11 S 2.612 3.388 12 O -0.976 6.976 13 O -0.948 6.948 14 C -0.557 4.557 15 C 0.042 3.958 16 C -0.520 4.520 17 H 0.067 0.933 18 C 0.085 3.915 19 N -0.874 5.874 20 Si 0.890 3.110 21 H -0.272 1.272 22 H -0.286 1.286 23 H -0.270 1.270 24 C -0.207 4.207 25 C -0.137 4.137 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.049 0.951 38 H 0.056 0.944 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.059 0.941 42 H 0.408 0.592 43 H 0.128 0.872 44 H 0.098 0.902 45 H 0.263 0.737 46 H 0.071 0.929 47 H 0.085 0.915 48 H 0.088 0.912 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.075 -1.972 -2.563 18.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.157 4.157 4 C -0.158 4.158 5 C -0.113 4.113 6 H 0.092 0.908 7 C -0.155 4.155 8 C -0.223 4.223 9 C -0.010 4.010 10 N -0.889 5.889 11 S 2.709 3.291 12 O -0.966 6.966 13 O -0.938 6.938 14 C -0.690 4.690 15 C 0.040 3.960 16 C -0.557 4.557 17 H 0.085 0.915 18 C -0.121 4.121 19 N -0.509 5.509 20 Si 0.717 3.283 21 H -0.198 1.198 22 H -0.212 1.212 23 H -0.195 1.195 24 C -0.244 4.244 25 C -0.176 4.176 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.091 0.909 40 H 0.104 0.896 41 H 0.078 0.922 42 H 0.240 0.760 43 H 0.146 0.854 44 H 0.117 0.883 45 H 0.072 0.928 46 H 0.090 0.910 47 H 0.104 0.896 48 H 0.106 0.894 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -17.608 -1.808 -1.777 17.789 hybrid contribution 0.097 -0.521 -0.018 0.530 sum -17.510 -2.329 -1.795 17.755 Atomic orbital electron populations 1.21775 0.96155 1.01398 1.01673 1.21546 0.95594 0.97207 1.02053 1.21647 0.95414 0.96507 1.02087 1.21686 0.95389 0.95981 1.02762 1.21378 0.94568 0.96728 0.98590 0.90809 1.21532 0.99881 0.99802 0.94328 1.21976 1.02731 1.00201 0.97383 1.21361 0.94941 0.82583 1.02071 1.55957 1.31723 1.13969 1.87231 1.04950 0.72688 0.74583 0.76878 1.93498 1.85580 1.29669 1.87886 1.93523 1.84457 1.76762 1.39042 1.29990 1.11128 1.13482 1.14396 1.18250 0.86914 0.96170 0.94699 1.20554 1.41107 0.98450 0.95560 0.91458 1.24935 0.94018 0.96287 0.96821 1.70007 1.46209 1.03312 1.31387 0.86592 0.78789 0.78517 0.84393 1.19773 1.21179 1.19462 1.23161 1.04278 0.91379 1.05613 1.22518 1.00855 0.97567 0.96650 0.92884 0.92975 0.92854 0.92095 0.92032 0.91689 0.92196 0.91692 0.90999 0.91875 0.92112 0.93199 0.92547 0.90854 0.89631 0.92229 0.75972 0.85368 0.88314 0.92770 0.91028 0.89624 0.89355 0.91713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.91 37.15 0.37 -0.67 16 2 C -0.13 -0.95 5.93 -26.73 -0.16 -1.11 16 3 C -0.12 -0.94 4.97 -26.73 -0.13 -1.08 16 4 C -0.12 -1.09 4.51 -26.73 -0.12 -1.21 16 5 C -0.09 -0.95 2.26 -90.62 -0.20 -1.15 16 6 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 7 C -0.12 -1.27 5.32 -26.73 -0.14 -1.41 16 8 C -0.17 -2.03 9.17 37.16 0.34 -1.69 16 9 C 0.12 1.52 5.23 -4.04 -0.02 1.49 16 10 N -1.13 -16.51 5.21 -10.62 -0.06 -16.56 16 11 S 2.61 52.70 5.02 -107.50 -0.54 52.16 16 12 O -0.98 -21.80 18.08 -57.54 -1.04 -22.84 16 13 O -0.95 -22.31 16.92 -57.54 -0.97 -23.29 16 14 C -0.56 -11.61 5.97 37.16 0.22 -11.38 16 15 C 0.04 1.03 1.48 -155.66 -0.23 0.79 16 16 C -0.52 -14.30 7.80 -34.44 -0.27 -14.56 16 17 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 18 C 0.08 2.32 5.43 -17.82 -0.10 2.22 16 19 N -0.87 -24.05 12.72 55.43 0.71 -23.34 16 20 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 21 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 23 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 24 C -0.21 -4.60 9.94 -26.69 -0.27 -4.86 16 25 C -0.14 -3.15 9.26 -26.69 -0.25 -3.40 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.52 6.52 -51.93 -0.34 0.18 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.69 6.13 -51.93 -0.32 0.37 16 35 H 0.06 0.72 7.47 -51.93 -0.39 0.34 16 36 H 0.06 0.56 6.47 -51.93 -0.34 0.22 16 37 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.61 6.12 -51.93 -0.32 0.30 16 39 H 0.07 1.11 6.70 -51.93 -0.35 0.76 16 40 H 0.09 1.24 5.93 -51.93 -0.31 0.94 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.41 5.01 8.41 -34.46 -0.29 4.72 16 43 H 0.13 2.72 8.14 -51.92 -0.42 2.30 16 44 H 0.10 1.73 8.11 -51.92 -0.42 1.31 16 45 H 0.26 6.89 8.32 -40.82 -0.34 6.55 16 46 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 47 H 0.09 1.89 8.14 -51.93 -0.42 1.46 16 48 H 0.09 2.16 8.14 -51.93 -0.42 1.74 16 49 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 396.12 15.07 5.97 5.97 Total: -1.00 -31.83 396.12 -10.87 -42.69 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -8.95 Total: 6.59 kcal Atomic # 6 Polarization: -37.06 SS G_CDS: -0.96 Total: -38.02 kcal Atomic # 7 Polarization: -40.55 SS G_CDS: 0.65 Total: -39.90 kcal Atomic # 8 Polarization: -44.11 SS G_CDS: -2.01 Total: -46.12 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: 52.70 SS G_CDS: -0.54 Total: 52.16 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.83 -10.87 -42.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451030530.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.830 kcal (2) G-P(sol) polarization free energy of solvation -31.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds