Wall clock time and date at job start Tue Mar 31 2020 11:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47366 * 2 1 4 4 C 1.52992 * 109.47105 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.47105 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.46775 * 305.00631 * 5 4 3 7 7 C 1.52994 * 109.46924 * 65.00052 * 5 4 3 8 8 C 1.53005 * 109.46732 * 61.98949 * 7 5 4 9 9 C 1.52998 * 109.47329 * 185.00705 * 5 4 3 10 10 N 1.46499 * 109.47107 * 179.82927 * 9 5 4 11 11 S 1.65595 * 119.99893 * 156.79814 * 10 9 5 12 12 O 1.42104 * 104.27803 * 181.07082 * 11 10 9 13 13 O 1.42094 * 104.28165 * 308.92751 * 11 10 9 14 14 C 1.81401 * 104.45292 * 65.00151 * 11 10 9 15 15 C 1.52999 * 109.47377 * 172.42179 * 14 11 10 16 16 C 1.50696 * 115.54994 * 57.63919 * 15 14 11 17 17 H 1.08002 * 119.99543 * 264.64614 * 16 15 14 18 18 C 1.37879 * 120.00408 * 84.64766 * 16 15 14 19 19 N 1.31520 * 119.99520 * 2.01990 * 18 16 15 20 20 Si 1.86795 * 120.00189 * 182.01960 * 18 16 15 21 21 H 1.48500 * 109.47176 * 90.00069 * 20 18 16 22 22 H 1.48503 * 109.47033 * 210.00351 * 20 18 16 23 23 H 1.48500 * 109.47311 * 329.99778 * 20 18 16 24 24 C 1.52996 * 117.49559 * 271.96668 * 15 14 11 25 25 C 1.53000 * 117.49476 * 203.30709 * 15 14 11 26 26 H 1.09000 * 109.47271 * 59.99805 * 1 2 3 27 27 H 1.08994 * 109.47395 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47647 * 300.00107 * 1 2 3 29 29 H 1.08997 * 109.47163 * 239.99977 * 2 1 3 30 30 H 1.09000 * 109.47271 * 120.00195 * 2 1 3 31 31 H 1.09006 * 109.46962 * 60.00100 * 3 2 1 32 32 H 1.09000 * 109.47085 * 300.00310 * 3 2 1 33 33 H 1.09006 * 109.46733 * 60.00444 * 4 3 2 34 34 H 1.09000 * 109.47798 * 300.00358 * 4 3 2 35 35 H 1.09005 * 109.47168 * 181.98354 * 7 5 4 36 36 H 1.08996 * 109.47773 * 301.98928 * 7 5 4 37 37 H 1.09005 * 109.46842 * 185.40654 * 8 7 5 38 38 H 1.08997 * 109.47196 * 305.40503 * 8 7 5 39 39 H 1.09006 * 109.46911 * 65.40855 * 8 7 5 40 40 H 1.09000 * 109.47068 * 299.82715 * 9 5 4 41 41 H 1.08997 * 109.47394 * 59.82523 * 9 5 4 42 42 H 0.96998 * 120.00158 * 336.79995 * 10 9 5 43 43 H 1.09009 * 109.46637 * 292.42519 * 14 11 10 44 44 H 1.09001 * 109.47038 * 52.41533 * 14 11 10 45 45 H 0.96996 * 119.99830 * 185.02044 * 19 18 16 46 46 H 1.09006 * 117.50144 * 359.97438 * 24 15 14 47 47 H 1.09003 * 117.49831 * 145.02409 * 24 15 14 48 48 H 1.09005 * 117.49825 * 214.97537 * 25 15 14 49 49 H 1.09000 * 117.50065 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4424 0.0006 5 6 4.0800 2.8850 0.0000 6 1 3.6456 3.4235 -0.8423 7 6 3.6747 3.5697 1.3067 8 6 4.3247 2.8432 2.4861 9 6 5.6049 2.8867 -0.1253 10 7 6.0929 4.2680 -0.1300 11 16 7.6531 4.5965 0.3173 12 8 7.7563 6.0102 0.2166 13 8 7.8053 3.9381 1.5673 14 6 8.6673 3.7921 -0.9535 15 6 10.1338 4.1815 -0.7577 16 6 10.7200 3.8495 0.5904 17 1 10.7424 4.5981 1.3686 18 6 11.2278 2.5903 0.8302 19 7 11.2368 1.6912 -0.1296 20 14 11.9029 2.1614 2.5183 21 1 10.8121 1.6113 3.3625 22 1 12.9793 1.1480 2.3780 23 1 12.4541 3.3838 3.1562 24 6 10.6242 5.4565 -1.4467 25 6 11.0584 4.0861 -1.9730 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.6767 1.9564 -0.8900 33 1 3.9336 0.9285 -0.8892 34 1 3.9330 0.9287 0.8908 35 1 4.0074 4.6077 1.2915 36 1 2.5904 3.5373 1.4130 37 1 3.9608 3.2699 3.4208 38 1 4.0689 1.7844 2.4461 39 1 5.4073 2.9579 2.4314 40 1 6.0393 2.3508 0.7186 41 1 5.8937 2.3961 -1.0548 42 1 5.5021 4.9902 -0.3951 43 1 8.5642 2.7101 -0.8695 44 1 8.3347 4.1131 -1.9407 45 1 11.5259 0.7845 0.0579 46 1 9.9021 6.0176 -2.0400 47 1 11.3712 6.0550 -0.9253 48 1 12.0908 3.7837 -1.7975 49 1 10.6219 3.7455 -2.9119 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451030530.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:20 Heat of formation + Delta-G solvation = -107.835137 kcal Electronic energy + Delta-G solvation = -25936.895533 eV Core-core repulsion = 22410.743681 eV Total energy + Delta-G solvation = -3526.151851 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.30469 -38.54705 -37.87179 -36.73673 -36.00659 -34.09186 -33.97027 -30.94737 -29.86311 -28.37075 -27.48821 -25.30703 -24.26115 -22.95963 -21.86035 -21.51834 -20.32887 -19.94864 -18.42090 -18.24728 -17.12476 -16.94041 -16.76725 -16.67053 -16.10491 -15.85815 -15.42217 -15.32301 -14.90635 -14.56310 -14.12267 -13.81292 -13.73354 -13.57164 -13.51105 -13.37729 -13.12003 -13.07268 -12.90374 -12.85186 -12.84281 -12.70474 -12.42955 -12.23810 -12.17744 -12.00008 -11.88837 -11.76646 -11.56464 -11.48694 -11.25993 -11.20964 -11.00791 -10.98442 -10.50013 -10.38155 -9.84428 -8.21001 -6.36973 -0.45908 1.36452 1.41059 1.47512 2.12310 2.39166 2.98888 3.07749 3.38399 3.51085 3.76639 3.88051 3.94578 4.03663 4.21963 4.28502 4.31199 4.36822 4.47871 4.54721 4.59269 4.61290 4.63618 4.68527 4.71984 4.79382 4.85654 4.92147 4.98246 4.98592 5.05659 5.06770 5.16448 5.22372 5.23581 5.27707 5.36109 5.36901 5.43869 5.45591 5.52403 5.58185 5.62547 5.69205 5.69588 6.21140 6.24854 6.70238 7.37093 8.86049 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015633 B = 0.003595 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.634077 B = 7787.216112 C = 8306.471393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.114 4.114 4 C -0.118 4.118 5 C -0.085 4.085 6 H 0.095 0.905 7 C -0.118 4.118 8 C -0.167 4.167 9 C 0.107 3.893 10 N -1.112 6.112 11 S 2.626 3.374 12 O -1.001 7.001 13 O -0.990 6.990 14 C -0.555 4.555 15 C 0.009 3.991 16 C -0.538 4.538 17 H 0.046 0.954 18 C 0.047 3.953 19 N -0.889 5.889 20 Si 0.930 3.070 21 H -0.276 1.276 22 H -0.272 1.272 23 H -0.271 1.271 24 C -0.196 4.196 25 C -0.134 4.134 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.054 0.946 36 H 0.082 0.918 37 H 0.052 0.948 38 H 0.067 0.933 39 H 0.038 0.962 40 H 0.064 0.936 41 H 0.078 0.922 42 H 0.422 0.578 43 H 0.121 0.879 44 H 0.135 0.865 45 H 0.266 0.734 46 H 0.099 0.901 47 H 0.079 0.921 48 H 0.065 0.935 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.013 -2.114 -3.884 20.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C -0.152 4.152 4 C -0.157 4.157 5 C -0.105 4.105 6 H 0.113 0.887 7 C -0.156 4.156 8 C -0.224 4.224 9 C -0.019 4.019 10 N -0.873 5.873 11 S 2.723 3.277 12 O -0.991 6.991 13 O -0.979 6.979 14 C -0.687 4.687 15 C 0.007 3.993 16 C -0.575 4.575 17 H 0.064 0.936 18 C -0.156 4.156 19 N -0.525 5.525 20 Si 0.755 3.245 21 H -0.202 1.202 22 H -0.197 1.197 23 H -0.196 1.196 24 C -0.233 4.233 25 C -0.173 4.173 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.101 0.899 37 H 0.071 0.929 38 H 0.086 0.914 39 H 0.057 0.943 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.258 0.742 43 H 0.140 0.860 44 H 0.154 0.846 45 H 0.075 0.925 46 H 0.117 0.883 47 H 0.098 0.902 48 H 0.084 0.916 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -19.536 -1.937 -3.102 19.876 hybrid contribution 0.665 -0.473 0.392 0.906 sum -18.871 -2.410 -2.710 19.217 Atomic orbital electron populations 1.21770 0.95558 1.01720 1.01905 1.21548 0.96129 0.96964 1.01867 1.21606 0.94261 0.96808 1.02486 1.21674 0.96328 0.94991 1.02662 1.21369 0.92335 0.97798 0.98992 0.88709 1.21564 1.01054 0.99059 0.93903 1.21974 1.00576 1.01367 0.98510 1.21628 0.96932 0.81159 1.02201 1.55391 1.29680 1.15418 1.86817 1.04206 0.73670 0.73572 0.76228 1.93453 1.86481 1.31050 1.88105 1.93475 1.85608 1.77344 1.41511 1.29887 1.09131 1.13110 1.16612 1.18390 0.88890 0.98228 0.93787 1.20728 1.41677 0.98259 0.96851 0.93559 1.25458 0.94455 0.96406 0.99275 1.70038 1.46804 1.03470 1.32225 0.85983 0.78505 0.78485 0.81542 1.20195 1.19663 1.19552 1.23224 1.04263 0.90927 1.04887 1.22454 0.99540 0.98241 0.97046 0.92485 0.92678 0.92778 0.92055 0.92517 0.91632 0.91388 0.91132 0.91881 0.92682 0.89916 0.92904 0.91434 0.94260 0.91717 0.90388 0.74207 0.86038 0.84647 0.92524 0.88251 0.90242 0.91621 0.89456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.91 71.98 0.71 -1.04 16 2 C -0.13 -1.66 5.93 30.59 0.18 -1.48 16 3 C -0.11 -1.51 4.97 30.59 0.15 -1.35 16 4 C -0.12 -1.89 4.51 30.59 0.14 -1.75 16 5 C -0.09 -1.54 2.26 -10.79 -0.02 -1.56 16 6 H 0.09 1.37 8.14 -2.39 -0.02 1.36 16 7 C -0.12 -2.34 5.32 30.59 0.16 -2.18 16 8 C -0.17 -4.04 9.17 71.98 0.66 -3.38 16 9 C 0.11 2.61 5.23 86.38 0.45 3.06 16 10 N -1.11 -30.84 5.21 -187.50 -0.98 -31.82 16 11 S 2.63 105.20 5.02 -56.49 -0.28 104.92 16 12 O -1.00 -44.15 18.08 -127.65 -2.31 -46.46 16 13 O -0.99 -47.82 16.92 -127.65 -2.16 -49.98 16 14 C -0.55 -22.45 5.97 71.98 0.43 -22.02 16 15 C 0.01 0.44 1.48 -52.93 -0.08 0.36 16 16 C -0.54 -30.09 7.80 25.60 0.20 -29.89 16 17 H 0.05 2.70 7.81 -2.91 -0.02 2.68 16 18 C 0.05 2.62 5.43 84.65 0.46 3.08 16 19 N -0.89 -49.11 12.72 21.45 0.27 -48.84 16 20 Si 0.93 44.79 29.54 68.60 2.03 46.82 16 21 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 22 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 23 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 24 C -0.20 -8.45 9.94 30.62 0.30 -8.15 16 25 C -0.13 -6.04 9.26 30.62 0.28 -5.75 16 26 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.07 0.87 6.52 -2.38 -0.02 0.85 16 32 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 34 H 0.06 1.12 6.13 -2.39 -0.01 1.11 16 35 H 0.05 1.18 7.47 -2.38 -0.02 1.16 16 36 H 0.08 1.30 6.47 -2.39 -0.02 1.28 16 37 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 38 H 0.07 1.44 6.12 -2.39 -0.01 1.42 16 39 H 0.04 1.22 6.70 -2.38 -0.02 1.20 16 40 H 0.06 1.89 5.93 -2.39 -0.01 1.88 16 41 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.42 9.45 8.41 -96.75 -0.81 8.64 16 43 H 0.12 5.08 8.14 -2.39 -0.02 5.06 16 44 H 0.14 4.35 8.11 -2.39 -0.02 4.33 16 45 H 0.27 13.92 8.32 -92.71 -0.77 13.15 16 46 H 0.10 3.70 8.14 -2.38 -0.02 3.68 16 47 H 0.08 3.47 8.14 -2.39 -0.02 3.45 16 48 H 0.07 3.23 8.14 -2.38 -0.02 3.21 16 49 H 0.09 3.49 8.14 -2.39 -0.02 3.47 16 Total: -1.00 -68.85 396.12 0.70 -68.15 By element: Atomic # 1 Polarization: 29.16 SS G_CDS: 0.09 Total: 29.26 kcal Atomic # 6 Polarization: -76.09 SS G_CDS: 4.03 Total: -72.06 kcal Atomic # 7 Polarization: -79.95 SS G_CDS: -0.70 Total: -80.65 kcal Atomic # 8 Polarization: -91.97 SS G_CDS: -4.47 Total: -96.43 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Atomic # 16 Polarization: 105.20 SS G_CDS: -0.28 Total: 104.92 kcal Total: -68.85 0.70 -68.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451030530.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.687 kcal (2) G-P(sol) polarization free energy of solvation -68.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds