Wall clock time and date at job start Tue Mar 31 2020 11:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47165 * 2 1 4 4 C 1.52999 * 109.46828 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47300 * 185.26509 * 4 3 2 6 6 H 1.09009 * 109.46862 * 53.20251 * 5 4 3 7 7 C 1.52997 * 109.46961 * 293.21109 * 5 4 3 8 8 C 1.53007 * 109.46996 * 298.35370 * 7 5 4 9 9 C 1.52993 * 109.47518 * 173.20452 * 5 4 3 10 10 N 1.46504 * 109.47308 * 185.00009 * 9 5 4 11 11 S 1.65598 * 119.99926 * 165.00197 * 10 9 5 12 12 O 1.42102 * 104.27264 * 181.07036 * 11 10 9 13 13 O 1.42094 * 104.27922 * 308.92805 * 11 10 9 14 14 C 1.81401 * 104.45134 * 65.00088 * 11 10 9 15 15 C 1.52995 * 109.47240 * 173.66082 * 14 11 10 16 16 C 1.50703 * 115.54888 * 65.21003 * 15 14 11 17 17 H 1.07999 * 120.00248 * 264.74709 * 16 15 14 18 18 C 1.37888 * 119.99399 * 84.74669 * 16 15 14 19 19 N 1.31508 * 119.99985 * 2.03209 * 18 16 15 20 20 Si 1.86800 * 119.99629 * 182.03378 * 18 16 15 21 21 H 1.48504 * 109.47034 * 59.99748 * 20 18 16 22 22 H 1.48496 * 109.46975 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47147 * 300.00131 * 20 18 16 24 24 C 1.53005 * 117.50294 * 279.54602 * 15 14 11 25 25 C 1.53002 * 117.50227 * 210.88402 * 15 14 11 26 26 H 1.08996 * 109.46986 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.46812 * 299.99805 * 1 2 3 28 28 H 1.09002 * 109.46459 * 59.99955 * 1 2 3 29 29 H 1.09005 * 109.47065 * 239.99609 * 2 1 3 30 30 H 1.09007 * 109.47084 * 120.00366 * 2 1 3 31 31 H 1.08992 * 109.47096 * 60.00370 * 3 2 1 32 32 H 1.09001 * 109.46950 * 299.99419 * 3 2 1 33 33 H 1.09002 * 109.47513 * 65.26763 * 4 3 2 34 34 H 1.09004 * 109.47487 * 305.26101 * 4 3 2 35 35 H 1.09005 * 109.47267 * 178.35383 * 7 5 4 36 36 H 1.08999 * 109.47588 * 58.35374 * 7 5 4 37 37 H 1.09004 * 109.46827 * 300.40794 * 8 7 5 38 38 H 1.09001 * 109.47138 * 180.40986 * 8 7 5 39 39 H 1.08996 * 109.47194 * 60.40302 * 8 7 5 40 40 H 1.09001 * 109.47666 * 305.00239 * 9 5 4 41 41 H 1.08998 * 109.46833 * 65.00273 * 9 5 4 42 42 H 0.97001 * 119.99510 * 344.99866 * 10 9 5 43 43 H 1.08991 * 109.46836 * 293.66515 * 14 11 10 44 44 H 1.09005 * 109.46754 * 53.66293 * 14 11 10 45 45 H 0.97001 * 119.99575 * 185.02018 * 19 18 16 46 46 H 1.08999 * 117.49527 * 359.97438 * 24 15 14 47 47 H 1.08989 * 117.50338 * 145.01862 * 24 15 14 48 48 H 1.08999 * 117.49813 * 214.98391 * 25 15 14 49 49 H 1.09003 * 117.49553 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0802 2.8788 0.1317 6 1 3.6213 3.3486 1.0018 7 6 3.7137 3.6681 -1.1266 8 6 4.3910 3.0326 -2.3426 9 6 5.6007 2.8664 0.3013 10 7 6.0758 4.2303 0.5473 11 16 7.6045 4.4817 1.1322 12 8 7.7006 5.8931 1.2661 13 8 7.6899 3.6306 2.2668 14 6 8.6977 3.8918 -0.1898 15 6 10.1497 4.2165 0.1663 16 6 10.6969 3.5047 1.3766 17 1 10.6788 3.9888 2.3419 18 6 11.2208 2.2354 1.2516 19 7 11.2794 1.6618 0.0696 20 14 11.8470 1.3306 2.7611 21 1 10.7383 1.1669 3.7354 22 1 12.3555 -0.0061 2.3614 23 1 12.9443 2.1116 3.3865 24 6 10.6399 5.6420 -0.0965 25 6 11.1156 4.4921 -0.9879 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.6768 1.9563 -0.8900 33 1 3.9330 1.0126 -0.9343 34 1 3.9338 0.8490 0.8382 35 1 4.0514 4.6990 -1.0201 36 1 2.6325 3.6523 -1.2635 37 1 5.4720 3.0419 -2.2025 38 1 4.1358 3.5992 -3.2381 39 1 4.0479 2.0040 -2.4533 40 1 5.8670 2.2311 1.1461 41 1 6.0642 2.4782 -0.6056 42 1 5.4948 4.9860 0.3674 43 1 8.5833 2.8137 -0.3017 44 1 8.4342 4.3843 -1.1259 45 1 11.5797 0.7428 -0.0091 46 1 9.9279 6.3482 -0.5234 47 1 11.3583 6.0646 0.6057 48 1 12.1468 4.1587 -0.8717 49 1 10.7165 4.4416 -2.0010 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451030531.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:25 Heat of formation + Delta-G solvation = -88.247046 kcal Electronic energy + Delta-G solvation = -25815.832472 eV Core-core repulsion = 22290.530025 eV Total energy + Delta-G solvation = -3525.302448 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -38.47295 -36.72974 -36.21160 -35.27899 -35.01922 -33.03438 -32.01826 -30.27111 -28.16967 -27.50493 -25.43639 -24.47451 -23.55527 -21.24016 -21.16782 -19.73890 -19.23057 -18.59197 -16.92832 -16.42264 -16.26415 -15.85203 -15.22735 -14.95049 -14.72357 -14.54557 -14.33246 -14.01055 -13.73827 -13.33694 -13.10131 -12.94255 -12.81431 -12.41094 -12.31853 -11.97123 -11.79249 -11.60035 -11.48312 -11.39657 -11.24912 -11.13516 -11.06661 -11.00425 -10.88209 -10.84896 -10.57603 -10.53638 -10.52762 -10.42732 -10.29194 -10.08156 -9.64125 -9.11171 -9.03664 -8.50890 -8.05360 -6.12156 -4.23679 1.10809 3.34093 3.35989 3.44772 3.50697 4.39626 4.44444 4.58952 4.65042 4.71972 4.84812 4.93832 4.97371 5.05212 5.16985 5.22014 5.24126 5.29859 5.37243 5.44416 5.52125 5.55587 5.59838 5.66563 5.68996 5.72179 5.80828 5.84718 5.93840 5.97553 5.99270 6.02695 6.08913 6.17647 6.22595 6.25523 6.29185 6.38841 6.43552 6.63648 6.75236 7.01749 7.24230 7.33264 7.46329 7.80970 8.21954 8.82086 9.47911 10.95392 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014787 B = 0.003615 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.092884 B = 7743.103465 C = 8549.839657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.118 4.118 4 C -0.120 4.120 5 C -0.094 4.094 6 H 0.078 0.922 7 C -0.120 4.120 8 C -0.161 4.161 9 C 0.116 3.884 10 N -1.132 6.132 11 S 2.608 3.392 12 O -0.975 6.975 13 O -0.952 6.952 14 C -0.554 4.554 15 C 0.041 3.959 16 C -0.514 4.514 17 H 0.067 0.933 18 C 0.081 3.919 19 N -0.875 5.875 20 Si 0.889 3.111 21 H -0.268 1.268 22 H -0.286 1.286 23 H -0.274 1.274 24 C -0.209 4.209 25 C -0.136 4.136 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.051 0.949 39 H 0.057 0.943 40 H 0.079 0.921 41 H 0.066 0.934 42 H 0.408 0.592 43 H 0.129 0.871 44 H 0.100 0.900 45 H 0.263 0.737 46 H 0.074 0.926 47 H 0.085 0.915 48 H 0.088 0.912 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.057 -0.956 -5.177 18.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.156 4.156 4 C -0.158 4.158 5 C -0.114 4.114 6 H 0.096 0.904 7 C -0.158 4.158 8 C -0.218 4.218 9 C -0.010 4.010 10 N -0.889 5.889 11 S 2.705 3.295 12 O -0.966 6.966 13 O -0.941 6.941 14 C -0.687 4.687 15 C 0.038 3.962 16 C -0.551 4.551 17 H 0.085 0.915 18 C -0.123 4.123 19 N -0.511 5.511 20 Si 0.715 3.285 21 H -0.193 1.193 22 H -0.211 1.211 23 H -0.199 1.199 24 C -0.247 4.247 25 C -0.175 4.175 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.097 0.903 41 H 0.084 0.916 42 H 0.241 0.759 43 H 0.147 0.853 44 H 0.118 0.882 45 H 0.072 0.928 46 H 0.092 0.908 47 H 0.104 0.896 48 H 0.107 0.893 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -17.644 -0.912 -4.372 18.200 hybrid contribution 0.137 -0.608 -0.133 0.638 sum -17.506 -1.520 -4.505 18.140 Atomic orbital electron populations 1.21777 0.96146 1.01414 1.01668 1.21553 0.95604 0.97180 1.02086 1.21635 0.95384 0.96532 1.02036 1.21691 0.95392 0.95906 1.02834 1.21381 0.94684 0.96561 0.98729 0.90412 1.21562 1.00397 0.99317 0.94518 1.21933 1.01578 1.00842 0.97418 1.21395 0.94882 0.83140 1.01610 1.55961 1.33896 1.13042 1.86044 1.05092 0.73207 0.74274 0.76968 1.93502 1.85759 1.30685 1.86644 1.93531 1.85006 1.68823 1.46763 1.29976 1.11806 1.12028 1.14891 1.18270 0.87124 0.93211 0.97567 1.20511 1.41101 1.00913 0.92602 0.91484 1.24944 0.94147 0.97348 0.95909 1.69998 1.45886 1.12930 1.22267 0.86686 0.79627 0.78715 0.83457 1.19284 1.21138 1.19909 1.23195 1.04606 0.91973 1.04891 1.22523 1.00598 1.00856 0.93497 0.92962 0.92842 0.92892 0.92084 0.91992 0.92076 0.91885 0.91129 0.91461 0.91957 0.91790 0.91872 0.93038 0.92362 0.90266 0.91562 0.75934 0.85275 0.88193 0.92759 0.90767 0.89597 0.89347 0.91696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.91 37.16 0.37 -0.66 16 2 C -0.13 -0.95 5.93 -26.73 -0.16 -1.11 16 3 C -0.12 -0.93 4.88 -26.73 -0.13 -1.06 16 4 C -0.12 -1.08 4.52 -26.73 -0.12 -1.20 16 5 C -0.09 -0.94 2.25 -90.62 -0.20 -1.15 16 6 H 0.08 0.79 8.14 -51.92 -0.42 0.36 16 7 C -0.12 -1.08 5.38 -26.73 -0.14 -1.22 16 8 C -0.16 -1.46 9.23 37.16 0.34 -1.12 16 9 C 0.12 1.51 5.27 -4.04 -0.02 1.49 16 10 N -1.13 -16.58 5.77 -10.61 -0.06 -16.64 16 11 S 2.61 52.43 5.19 -107.50 -0.56 51.88 16 12 O -0.98 -21.48 18.08 -57.54 -1.04 -22.52 16 13 O -0.95 -22.70 17.17 -57.54 -0.99 -23.69 16 14 C -0.55 -11.50 5.93 37.16 0.22 -11.28 16 15 C 0.04 0.99 1.39 -155.66 -0.22 0.78 16 16 C -0.51 -14.15 8.20 -34.43 -0.28 -14.43 16 17 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 18 C 0.08 2.22 5.43 -17.82 -0.10 2.13 16 19 N -0.88 -24.04 12.72 55.43 0.70 -23.34 16 20 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 21 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 24 C -0.21 -4.66 9.96 -26.69 -0.27 -4.92 16 25 C -0.14 -3.12 9.22 -26.69 -0.25 -3.37 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.47 6.84 -51.93 -0.36 0.12 16 33 H 0.07 0.61 6.15 -51.93 -0.32 0.29 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.56 6.94 -51.93 -0.36 0.20 16 36 H 0.06 0.51 6.67 -51.93 -0.35 0.16 16 37 H 0.06 0.64 6.26 -51.93 -0.33 0.32 16 38 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.49 6.35 -51.93 -0.33 0.16 16 40 H 0.08 1.14 7.69 -51.93 -0.40 0.74 16 41 H 0.07 0.81 6.12 -51.93 -0.32 0.49 16 42 H 0.41 5.06 7.39 -34.47 -0.25 4.80 16 43 H 0.13 2.74 8.14 -51.93 -0.42 2.32 16 44 H 0.10 1.75 8.09 -51.92 -0.42 1.33 16 45 H 0.26 6.90 8.32 -40.82 -0.34 6.56 16 46 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 47 H 0.09 1.89 8.14 -51.94 -0.42 1.47 16 48 H 0.09 2.17 8.14 -51.93 -0.42 1.74 16 49 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 395.91 15.07 5.97 5.97 Total: -1.00 -32.08 395.91 -10.84 -42.92 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -8.89 Total: 6.09 kcal Atomic # 6 Polarization: -36.17 SS G_CDS: -0.95 Total: -37.12 kcal Atomic # 7 Polarization: -40.62 SS G_CDS: 0.64 Total: -39.98 kcal Atomic # 8 Polarization: -44.18 SS G_CDS: -2.03 Total: -46.21 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: 52.43 SS G_CDS: -0.56 Total: 51.88 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.08 -10.84 -42.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451030531.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.325 kcal (2) G-P(sol) polarization free energy of solvation -32.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds