Wall clock time and date at job start Tue Mar 31 2020 11:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47165 * 2 1 4 4 C 1.52999 * 109.46828 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47300 * 185.26509 * 4 3 2 6 6 H 1.09009 * 109.46862 * 53.20251 * 5 4 3 7 7 C 1.52997 * 109.46961 * 293.21109 * 5 4 3 8 8 C 1.53007 * 109.46996 * 298.35370 * 7 5 4 9 9 C 1.52993 * 109.47518 * 173.20452 * 5 4 3 10 10 N 1.46504 * 109.47308 * 185.00009 * 9 5 4 11 11 S 1.65598 * 119.99926 * 165.00197 * 10 9 5 12 12 O 1.42102 * 104.27264 * 181.07036 * 11 10 9 13 13 O 1.42094 * 104.27922 * 308.92805 * 11 10 9 14 14 C 1.81401 * 104.45134 * 65.00088 * 11 10 9 15 15 C 1.52995 * 109.47240 * 173.66082 * 14 11 10 16 16 C 1.50703 * 115.54888 * 65.21003 * 15 14 11 17 17 H 1.07999 * 120.00248 * 264.74709 * 16 15 14 18 18 C 1.37888 * 119.99399 * 84.74669 * 16 15 14 19 19 N 1.31508 * 119.99985 * 2.03209 * 18 16 15 20 20 Si 1.86800 * 119.99629 * 182.03378 * 18 16 15 21 21 H 1.48504 * 109.47034 * 59.99748 * 20 18 16 22 22 H 1.48496 * 109.46975 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47147 * 300.00131 * 20 18 16 24 24 C 1.53005 * 117.50294 * 279.54602 * 15 14 11 25 25 C 1.53002 * 117.50227 * 210.88402 * 15 14 11 26 26 H 1.08996 * 109.46986 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.46812 * 299.99805 * 1 2 3 28 28 H 1.09002 * 109.46459 * 59.99955 * 1 2 3 29 29 H 1.09005 * 109.47065 * 239.99609 * 2 1 3 30 30 H 1.09007 * 109.47084 * 120.00366 * 2 1 3 31 31 H 1.08992 * 109.47096 * 60.00370 * 3 2 1 32 32 H 1.09001 * 109.46950 * 299.99419 * 3 2 1 33 33 H 1.09002 * 109.47513 * 65.26763 * 4 3 2 34 34 H 1.09004 * 109.47487 * 305.26101 * 4 3 2 35 35 H 1.09005 * 109.47267 * 178.35383 * 7 5 4 36 36 H 1.08999 * 109.47588 * 58.35374 * 7 5 4 37 37 H 1.09004 * 109.46827 * 300.40794 * 8 7 5 38 38 H 1.09001 * 109.47138 * 180.40986 * 8 7 5 39 39 H 1.08996 * 109.47194 * 60.40302 * 8 7 5 40 40 H 1.09001 * 109.47666 * 305.00239 * 9 5 4 41 41 H 1.08998 * 109.46833 * 65.00273 * 9 5 4 42 42 H 0.97001 * 119.99510 * 344.99866 * 10 9 5 43 43 H 1.08991 * 109.46836 * 293.66515 * 14 11 10 44 44 H 1.09005 * 109.46754 * 53.66293 * 14 11 10 45 45 H 0.97001 * 119.99575 * 185.02018 * 19 18 16 46 46 H 1.08999 * 117.49527 * 359.97438 * 24 15 14 47 47 H 1.08989 * 117.50338 * 145.01862 * 24 15 14 48 48 H 1.08999 * 117.49813 * 214.98391 * 25 15 14 49 49 H 1.09003 * 117.49553 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0802 2.8788 0.1317 6 1 3.6213 3.3486 1.0018 7 6 3.7137 3.6681 -1.1266 8 6 4.3910 3.0326 -2.3426 9 6 5.6007 2.8664 0.3013 10 7 6.0758 4.2303 0.5473 11 16 7.6045 4.4817 1.1322 12 8 7.7006 5.8931 1.2661 13 8 7.6899 3.6306 2.2668 14 6 8.6977 3.8918 -0.1898 15 6 10.1497 4.2165 0.1663 16 6 10.6969 3.5047 1.3766 17 1 10.6788 3.9888 2.3419 18 6 11.2208 2.2354 1.2516 19 7 11.2794 1.6618 0.0696 20 14 11.8470 1.3306 2.7611 21 1 10.7383 1.1669 3.7354 22 1 12.3555 -0.0061 2.3614 23 1 12.9443 2.1116 3.3865 24 6 10.6399 5.6420 -0.0965 25 6 11.1156 4.4921 -0.9879 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.6768 1.9563 -0.8900 33 1 3.9330 1.0126 -0.9343 34 1 3.9338 0.8490 0.8382 35 1 4.0514 4.6990 -1.0201 36 1 2.6325 3.6523 -1.2635 37 1 5.4720 3.0419 -2.2025 38 1 4.1358 3.5992 -3.2381 39 1 4.0479 2.0040 -2.4533 40 1 5.8670 2.2311 1.1461 41 1 6.0642 2.4782 -0.6056 42 1 5.4948 4.9860 0.3674 43 1 8.5833 2.8137 -0.3017 44 1 8.4342 4.3843 -1.1259 45 1 11.5797 0.7428 -0.0091 46 1 9.9279 6.3482 -0.5234 47 1 11.3583 6.0646 0.6057 48 1 12.1468 4.1587 -0.8717 49 1 10.7165 4.4416 -2.0010 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451030531.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:24 Heat of formation + Delta-G solvation = -107.667390 kcal Electronic energy + Delta-G solvation = -25816.674602 eV Core-core repulsion = 22290.530025 eV Total energy + Delta-G solvation = -3526.144577 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.31545 -38.55907 -37.91938 -36.78811 -36.03764 -34.07951 -33.99249 -30.94074 -29.86831 -28.36020 -27.47987 -25.33702 -24.25969 -22.96912 -21.87341 -21.51694 -20.27098 -20.01007 -18.41972 -18.30024 -17.29947 -16.94210 -16.70589 -16.68847 -16.04677 -15.78425 -15.47093 -15.30287 -14.86912 -14.71024 -14.15803 -13.80063 -13.77906 -13.61621 -13.43554 -13.36301 -13.10772 -13.08059 -12.91386 -12.87896 -12.84224 -12.68517 -12.43923 -12.23760 -12.20703 -12.01745 -11.90167 -11.74938 -11.55662 -11.44898 -11.31895 -11.24474 -11.05379 -10.98805 -10.49724 -10.39087 -9.83995 -8.19271 -6.34702 -0.49418 1.38433 1.40921 1.49191 2.06924 2.40081 2.94785 3.08420 3.39197 3.45831 3.75424 3.87513 3.94440 4.01251 4.19926 4.27178 4.30716 4.34766 4.42216 4.53084 4.58755 4.61456 4.62724 4.68883 4.72412 4.80877 4.85445 4.92003 4.98086 4.98960 5.04056 5.06331 5.19350 5.21763 5.22990 5.27328 5.35734 5.36415 5.44458 5.46291 5.52363 5.56428 5.62494 5.69098 5.70702 6.20863 6.23030 6.71671 7.37900 8.87570 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014787 B = 0.003615 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.092884 B = 7743.103465 C = 8549.839657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.128 4.128 3 C -0.113 4.113 4 C -0.119 4.119 5 C -0.087 4.087 6 H 0.078 0.922 7 C -0.119 4.119 8 C -0.163 4.163 9 C 0.107 3.893 10 N -1.112 6.112 11 S 2.624 3.376 12 O -0.996 6.996 13 O -0.996 6.996 14 C -0.551 4.551 15 C 0.009 3.991 16 C -0.535 4.535 17 H 0.047 0.953 18 C 0.044 3.956 19 N -0.891 5.891 20 Si 0.931 3.069 21 H -0.277 1.277 22 H -0.272 1.272 23 H -0.269 1.269 24 C -0.198 4.198 25 C -0.132 4.132 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.080 0.920 37 H 0.050 0.950 38 H 0.059 0.941 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.077 0.923 42 H 0.421 0.579 43 H 0.121 0.879 44 H 0.135 0.865 45 H 0.265 0.735 46 H 0.099 0.901 47 H 0.080 0.920 48 H 0.066 0.934 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.671 -0.823 -6.467 20.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C -0.151 4.151 4 C -0.157 4.157 5 C -0.107 4.107 6 H 0.096 0.904 7 C -0.156 4.156 8 C -0.220 4.220 9 C -0.019 4.019 10 N -0.874 5.874 11 S 2.721 3.279 12 O -0.987 6.987 13 O -0.985 6.985 14 C -0.684 4.684 15 C 0.007 3.993 16 C -0.572 4.572 17 H 0.065 0.935 18 C -0.159 4.159 19 N -0.527 5.527 20 Si 0.756 3.244 21 H -0.202 1.202 22 H -0.197 1.197 23 H -0.194 1.194 24 C -0.236 4.236 25 C -0.171 4.171 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.098 0.902 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.095 0.905 42 H 0.258 0.742 43 H 0.140 0.860 44 H 0.153 0.847 45 H 0.075 0.925 46 H 0.117 0.883 47 H 0.098 0.902 48 H 0.084 0.916 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -19.249 -0.765 -5.664 20.080 hybrid contribution 0.605 -0.638 0.254 0.915 sum -18.644 -1.403 -5.410 19.464 Atomic orbital electron populations 1.21770 0.95495 1.01757 1.01914 1.21557 0.96191 0.96918 1.01880 1.21592 0.94245 0.96835 1.02398 1.21686 0.96347 0.94987 1.02702 1.21353 0.92187 0.97598 0.99581 0.90362 1.21574 1.01432 0.98983 0.93619 1.21952 1.00767 1.01466 0.97795 1.21642 0.97262 0.81639 1.01366 1.55421 1.31957 1.14480 1.85524 1.04303 0.74053 0.73150 0.76419 1.93461 1.86544 1.31661 1.86992 1.93478 1.86104 1.69772 1.49176 1.29863 1.09860 1.11964 1.16702 1.18403 0.89094 0.94563 0.97242 1.20708 1.41752 1.01604 0.93156 0.93490 1.25484 0.94472 0.97965 0.98007 1.70037 1.46385 1.13157 1.23099 0.86022 0.78949 0.78485 0.80909 1.20237 1.19659 1.19444 1.23244 1.04511 0.91584 1.04229 1.22462 0.99263 1.01045 0.94371 0.92630 0.92846 0.92387 0.91946 0.92610 0.92182 0.90991 0.90682 0.92389 0.91872 0.90177 0.93091 0.92227 0.91753 0.92056 0.90477 0.74222 0.86031 0.84670 0.92549 0.88286 0.90163 0.91570 0.89430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.91 71.98 0.71 -1.08 16 2 C -0.13 -1.72 5.93 30.59 0.18 -1.54 16 3 C -0.11 -1.55 4.88 30.59 0.15 -1.40 16 4 C -0.12 -1.96 4.52 30.59 0.14 -1.82 16 5 C -0.09 -1.60 2.25 -10.80 -0.02 -1.63 16 6 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 7 C -0.12 -1.81 5.38 30.60 0.16 -1.64 16 8 C -0.16 -2.55 9.23 71.98 0.66 -1.89 16 9 C 0.11 2.67 5.27 86.38 0.46 3.13 16 10 N -1.11 -31.14 5.77 -187.49 -1.08 -32.23 16 11 S 2.62 104.37 5.19 -56.49 -0.29 104.08 16 12 O -1.00 -43.03 18.08 -127.65 -2.31 -45.33 16 13 O -1.00 -48.35 17.17 -127.65 -2.19 -50.55 16 14 C -0.55 -22.30 5.93 71.98 0.43 -21.87 16 15 C 0.01 0.44 1.39 -52.93 -0.07 0.37 16 16 C -0.53 -29.87 8.20 25.60 0.21 -29.66 16 17 H 0.05 2.73 7.81 -2.91 -0.02 2.71 16 18 C 0.04 2.40 5.43 84.66 0.46 2.86 16 19 N -0.89 -48.95 12.72 21.45 0.27 -48.68 16 20 Si 0.93 44.30 29.54 68.60 2.03 46.32 16 21 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 22 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 23 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 24 C -0.20 -8.60 9.96 30.62 0.30 -8.30 16 25 C -0.13 -5.97 9.22 30.62 0.28 -5.69 16 26 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.06 0.62 8.14 -2.39 -0.02 0.61 16 29 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 30 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.07 0.87 6.84 -2.39 -0.02 0.85 16 33 H 0.07 1.17 6.15 -2.39 -0.01 1.16 16 34 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 35 H 0.06 0.96 6.94 -2.38 -0.02 0.94 16 36 H 0.08 1.00 6.67 -2.39 -0.02 0.98 16 37 H 0.05 0.92 6.26 -2.38 -0.01 0.91 16 38 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.06 0.92 6.35 -2.39 -0.02 0.91 16 40 H 0.06 1.77 7.69 -2.39 -0.02 1.75 16 41 H 0.08 1.78 6.12 -2.39 -0.01 1.76 16 42 H 0.42 9.63 7.39 -96.74 -0.71 8.91 16 43 H 0.12 5.11 8.14 -2.39 -0.02 5.09 16 44 H 0.14 4.38 8.09 -2.39 -0.02 4.36 16 45 H 0.27 13.88 8.32 -92.71 -0.77 13.11 16 46 H 0.10 3.77 8.14 -2.39 -0.02 3.75 16 47 H 0.08 3.52 8.14 -2.39 -0.02 3.50 16 48 H 0.07 3.25 8.14 -2.39 -0.02 3.23 16 49 H 0.09 3.50 8.14 -2.39 -0.02 3.48 16 Total: -1.00 -68.40 395.91 0.67 -67.73 By element: Atomic # 1 Polarization: 28.62 SS G_CDS: 0.19 Total: 28.82 kcal Atomic # 6 Polarization: -74.21 SS G_CDS: 4.05 Total: -70.16 kcal Atomic # 7 Polarization: -80.09 SS G_CDS: -0.81 Total: -80.90 kcal Atomic # 8 Polarization: -91.38 SS G_CDS: -4.50 Total: -95.88 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Atomic # 16 Polarization: 104.37 SS G_CDS: -0.29 Total: 104.08 kcal Total: -68.40 0.67 -67.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451030531.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.938 kcal (2) G-P(sol) polarization free energy of solvation -68.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds