Wall clock time and date at job start Tue Mar 31 2020 12:45:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.52997 * 109.47003 * 2 1
4 4 C 1.53002 * 109.47033 * 179.97438 * 3 2 1
5 5 N 1.46500 * 109.47028 * 174.82698 * 4 3 2
6 6 C 1.46503 * 119.99968 * 86.39022 * 5 4 3
7 7 H 1.09003 * 109.47173 * 182.05385 * 6 5 4
8 8 C 1.52994 * 109.47223 * 62.04895 * 6 5 4
9 9 C 1.52996 * 109.46687 * 302.04566 * 6 5 4
10 10 C 1.52999 * 109.47746 * 300.04573 * 9 6 5
11 11 S 1.65598 * 120.00016 * 266.38482 * 5 4 3
12 12 O 1.42101 * 104.27920 * 206.07627 * 11 5 4
13 13 O 1.42100 * 104.27599 * 333.92993 * 11 5 4
14 14 C 1.81396 * 104.45115 * 90.00018 * 11 5 4
15 15 C 1.53001 * 109.47331 * 183.18711 * 14 11 5
16 16 C 1.50696 * 115.54723 * 61.26625 * 15 14 11
17 17 H 1.07999 * 119.99850 * 272.86622 * 16 15 14
18 18 C 1.37875 * 120.00320 * 92.86326 * 16 15 14
19 19 N 1.31517 * 119.99803 * 4.39033 * 18 16 15
20 20 Si 1.86800 * 120.00503 * 184.38708 * 18 16 15
21 21 H 1.48504 * 109.46985 * 90.00149 * 20 18 16
22 22 H 1.48499 * 109.47514 * 210.00510 * 20 18 16
23 23 H 1.48505 * 109.46949 * 330.00471 * 20 18 16
24 24 C 1.52996 * 117.49995 * 275.59531 * 15 14 11
25 25 C 1.52999 * 117.50022 * 206.93175 * 15 14 11
26 26 H 1.09001 * 109.47469 * 300.00246 * 1 2 3
27 27 H 1.08999 * 109.47018 * 60.00146 * 1 2 3
28 28 H 1.08996 * 109.47319 * 179.97438 * 1 2 3
29 29 H 1.09001 * 109.47469 * 239.99754 * 2 1 3
30 30 H 1.08999 * 109.47018 * 119.99854 * 2 1 3
31 31 H 1.09004 * 109.47297 * 60.00362 * 3 2 1
32 32 H 1.09004 * 109.47573 * 299.99833 * 3 2 1
33 33 H 1.09004 * 109.47327 * 294.82569 * 4 3 2
34 34 H 1.09003 * 109.47135 * 54.82879 * 4 3 2
35 35 H 1.08998 * 109.47227 * 60.00557 * 8 6 5
36 36 H 1.09002 * 109.47117 * 180.02562 * 8 6 5
37 37 H 1.08996 * 109.47375 * 299.99440 * 8 6 5
38 38 H 1.09000 * 109.46978 * 60.04576 * 9 6 5
39 39 H 1.09008 * 109.47061 * 180.02562 * 9 6 5
40 40 H 1.08997 * 109.47633 * 180.02562 * 10 9 6
41 41 H 1.09000 * 109.46885 * 300.00060 * 10 9 6
42 42 H 1.09000 * 109.46976 * 59.99829 * 10 9 6
43 43 H 1.08994 * 109.46979 * 303.19232 * 14 11 5
44 44 H 1.09000 * 109.46673 * 63.18946 * 14 11 5
45 45 H 0.97000 * 119.99905 * 184.99877 * 19 18 16
46 46 H 1.09002 * 117.49802 * 359.97438 * 24 15 14
47 47 H 1.08997 * 117.49864 * 145.02139 * 24 15 14
48 48 H 1.08996 * 117.50147 * 214.97830 * 25 15 14
49 49 H 1.09004 * 117.49780 * 359.97438 * 25 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 3.5700 1.4425 0.0006
5 7 4.0583 2.8181 -0.1239
6 6 4.2267 3.6467 1.0725
7 1 4.5610 4.6424 0.7807
8 6 5.2688 3.0081 1.9927
9 6 2.8910 3.7534 1.8109
10 6 1.8485 4.3910 0.8903
11 16 4.4202 3.4362 -1.6169
12 8 5.3864 4.4445 -1.3540
13 8 4.7461 2.2954 -2.3989
14 6 2.8664 4.1772 -2.1889
15 6 3.0517 4.7194 -3.6075
16 6 3.4146 3.6959 -4.6522
17 1 4.4502 3.4399 -4.8205
18 6 2.4246 3.0862 -5.3933
19 7 1.1717 3.4593 -5.2498
20 14 2.8628 1.7303 -6.6012
21 1 2.8104 0.4165 -5.9108
22 1 1.8937 1.7373 -7.7263
23 1 4.2329 1.9591 -7.1265
24 6 3.6456 6.1216 -3.7559
25 6 2.1602 5.8851 -4.0403
26 1 -0.3634 0.5139 0.8900
27 1 -0.3633 0.5138 -0.8900
28 1 -0.3634 -1.0276 -0.0005
29 1 1.8934 -0.5139 -0.8900
30 1 1.8933 -0.5138 0.8900
31 1 1.6767 1.9563 0.8900
32 1 1.6767 1.9564 -0.8900
33 1 3.9330 1.0111 0.9336
34 1 3.9337 0.8504 -0.8392
35 1 6.2203 2.9322 1.4666
36 1 5.3937 3.6244 2.8831
37 1 4.9344 2.0126 2.2846
38 1 2.5570 2.7578 2.1033
39 1 3.0161 4.3703 2.7009
40 1 0.8971 4.4674 1.4166
41 1 2.1825 5.3865 0.5979
42 1 1.7235 3.7738 0.0006
43 1 2.0815 3.4209 -2.1885
44 1 2.5856 4.9924 -1.5220
45 1 0.4673 2.9827 -5.7162
46 1 3.9039 6.6579 -2.8428
47 1 4.2985 6.3039 -4.6094
48 1 1.8366 5.9119 -5.0808
49 1 1.4413 6.2654 -3.3145
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000451052452.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:45:08
Heat of formation + Delta-G solvation = -67.883108 kcal
Electronic energy + Delta-G solvation = -27640.074821 eV
Core-core repulsion = 24115.655420 eV
Total energy + Delta-G solvation = -3524.419401 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 317.181 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-38.39359 -36.72669 -36.39547 -35.06778 -34.72018 -32.22212 -31.96823 -30.22890
-28.25129 -27.96898 -25.43174 -23.89850 -23.21892 -21.13011 -21.07973 -20.47818
-19.41858 -18.31626 -17.37597 -16.50602 -15.80626 -15.16804 -14.98185 -14.73789
-14.49838 -14.36684 -13.96589 -13.82142 -13.68471 -13.29468 -13.05652 -12.84609
-12.64452 -12.23384 -12.05400 -11.80835 -11.77188 -11.53714 -11.46819 -11.35742
-11.24576 -11.05515 -10.99340 -10.87130 -10.86418 -10.84254 -10.79110 -10.55014
-10.40935 -10.27529 -10.16940 -10.01431 -9.60533 -9.06899 -8.74603 -8.43823
-8.01825 -6.09574 -4.20164 1.06424 3.31936 3.33443 3.38647 3.45415
4.41232 4.59837 4.69286 4.81948 4.98188 5.05978 5.09108 5.11995
5.18696 5.21162 5.24785 5.32693 5.43316 5.54549 5.58217 5.64961
5.71642 5.76146 5.76751 5.83804 5.88009 5.92904 5.97186 6.02886
6.05168 6.12907 6.19488 6.24354 6.29379 6.35735 6.37249 6.42210
6.52705 6.54184 6.65573 6.76150 6.99784 7.06449 7.27113 7.56488
7.84023 8.23922 8.86134 9.50297 10.96949
Molecular weight = 317.18amu
Principal moments of inertia in cm(-1)
A = 0.012091 B = 0.006324 C = 0.005278
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2315.232693 B = 4426.247161 C = 5303.592069
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C -0.123 4.123
3 C -0.156 4.156
4 C 0.116 3.884
5 N -1.002 6.002
6 C 0.144 3.856
7 H 0.097 0.903
8 C -0.158 4.158
9 C -0.135 4.135
10 C -0.172 4.172
11 S 2.603 3.397
12 O -0.976 6.976
13 O -0.944 6.944
14 C -0.558 4.558
15 C 0.034 3.966
16 C -0.507 4.507
17 H 0.069 0.931
18 C 0.081 3.919
19 N -0.876 5.876
20 Si 0.889 3.111
21 H -0.275 1.275
22 H -0.287 1.287
23 H -0.270 1.270
24 C -0.216 4.216
25 C -0.125 4.125
26 H 0.050 0.950
27 H 0.057 0.943
28 H 0.050 0.950
29 H 0.065 0.935
30 H 0.059 0.941
31 H 0.077 0.923
32 H 0.070 0.930
33 H 0.075 0.925
34 H 0.093 0.907
35 H 0.060 0.940
36 H 0.062 0.938
37 H 0.058 0.942
38 H 0.072 0.928
39 H 0.067 0.933
40 H 0.054 0.946
41 H 0.054 0.946
42 H 0.071 0.929
43 H 0.126 0.874
44 H 0.101 0.899
45 H 0.261 0.739
46 H 0.071 0.929
47 H 0.085 0.915
48 H 0.095 0.905
49 H 0.063 0.937
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.665 -2.329 15.268 15.459
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.161 4.161
3 C -0.195 4.195
4 C -0.010 4.010
5 N -0.836 5.836
6 C 0.037 3.963
7 H 0.115 0.885
8 C -0.217 4.217
9 C -0.173 4.173
10 C -0.229 4.229
11 S 2.701 3.299
12 O -0.966 6.966
13 O -0.934 6.934
14 C -0.690 4.690
15 C 0.032 3.968
16 C -0.544 4.544
17 H 0.087 0.913
18 C -0.124 4.124
19 N -0.512 5.512
20 Si 0.716 3.284
21 H -0.201 1.201
22 H -0.213 1.213
23 H -0.195 1.195
24 C -0.253 4.253
25 C -0.164 4.164
26 H 0.070 0.930
27 H 0.077 0.923
28 H 0.069 0.931
29 H 0.084 0.916
30 H 0.077 0.923
31 H 0.095 0.905
32 H 0.088 0.912
33 H 0.094 0.906
34 H 0.112 0.888
35 H 0.079 0.921
36 H 0.081 0.919
37 H 0.077 0.923
38 H 0.090 0.910
39 H 0.086 0.914
40 H 0.074 0.926
41 H 0.073 0.927
42 H 0.090 0.910
43 H 0.144 0.856
44 H 0.119 0.881
45 H 0.071 0.929
46 H 0.089 0.911
47 H 0.104 0.896
48 H 0.113 0.887
49 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges 0.044 -2.399 14.759 14.953
hybrid contribution -0.767 -0.594 -0.432 1.062
sum -0.723 -2.993 14.327 14.654
Atomic orbital electron populations
1.21760 0.95923 1.01302 1.01947 1.21462 0.95913 0.96699 1.02033
1.22527 0.96253 0.97323 1.03382 1.21310 0.93378 0.82520 1.03753
1.57957 1.82254 1.20918 1.22515 1.20858 0.94859 0.94863 0.85702
0.88538 1.22091 0.99284 1.01045 0.99245 1.22020 0.95219 1.01640
0.98461 1.22155 0.98586 1.01167 1.00969 1.05298 0.77717 0.74767
0.72095 1.93482 1.57798 1.61396 1.83931 1.93529 1.82748 1.49177
1.67914 1.30212 1.20224 1.11291 1.07310 1.18340 1.01977 0.87582
0.88943 1.20546 0.93895 1.21903 1.18087 0.91332 1.24917 0.94963
0.96354 0.96129 1.70032 0.99334 1.38646 1.43160 0.86614 0.78537
0.82706 0.80511 1.20057 1.21305 1.19458 1.23261 0.98078 1.02302
1.01696 1.22467 0.90136 1.02152 1.01622 0.93044 0.92347 0.93051
0.91575 0.92258 0.90464 0.91154 0.90633 0.88843 0.92089 0.91902
0.92319 0.90982 0.91410 0.92641 0.92684 0.90999 0.85565 0.88062
0.92913 0.91082 0.89632 0.88697 0.91888
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.66 9.91 37.16 0.37 -1.29 16
2 C -0.12 -1.40 5.93 -26.73 -0.16 -1.56 16
3 C -0.16 -1.97 3.78 -26.73 -0.10 -2.07 16
4 C 0.12 1.57 5.12 -4.04 -0.02 1.55 16
5 N -1.00 -15.30 2.00 -107.30 -0.21 -15.52 16
6 C 0.14 1.84 2.61 -67.93 -0.18 1.66 16
7 H 0.10 1.34 6.91 -51.93 -0.36 0.98 16
8 C -0.16 -1.72 9.20 37.15 0.34 -1.38 16
9 C -0.13 -1.40 4.86 -26.73 -0.13 -1.53 16
10 C -0.17 -2.00 8.07 37.16 0.30 -1.70 16
11 S 2.60 53.14 5.22 -107.50 -0.56 52.58 16
12 O -0.98 -21.52 16.59 -57.54 -0.95 -22.48 16
13 O -0.94 -22.49 15.51 -57.54 -0.89 -23.39 16
14 C -0.56 -11.52 4.68 37.16 0.17 -11.35 16
15 C 0.03 0.83 1.61 -155.66 -0.25 0.58 16
16 C -0.51 -13.95 7.60 -34.44 -0.26 -14.21 16
17 H 0.07 1.96 7.78 -52.49 -0.41 1.55 16
18 C 0.08 2.20 5.41 -17.82 -0.10 2.11 16
19 N -0.88 -24.00 11.97 55.43 0.66 -23.33 16
20 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16
21 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16
22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16
23 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16
24 C -0.22 -4.84 9.95 -26.69 -0.27 -5.11 16
25 C -0.12 -2.90 8.88 -26.69 -0.24 -3.13 16
26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16
27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16
28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16
29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16
30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16
31 H 0.08 0.85 4.49 -51.93 -0.23 0.62 16
32 H 0.07 1.04 6.00 -51.93 -0.31 0.72 16
33 H 0.08 0.83 6.54 -51.93 -0.34 0.49 16
34 H 0.09 1.44 6.84 -51.93 -0.36 1.08 16
35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16
36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16
37 H 0.06 0.57 6.75 -51.93 -0.35 0.22 16
38 H 0.07 0.69 5.89 -51.93 -0.31 0.39 16
39 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16
40 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16
41 H 0.05 0.65 7.70 -51.93 -0.40 0.25 16
42 H 0.07 0.93 3.30 -51.93 -0.17 0.76 16
43 H 0.13 2.62 6.44 -51.93 -0.33 2.29 16
44 H 0.10 1.80 6.52 -51.92 -0.34 1.47 16
45 H 0.26 6.84 8.32 -40.82 -0.34 6.50 16
46 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16
47 H 0.09 1.91 8.14 -51.93 -0.42 1.49 16
48 H 0.09 2.38 7.69 -51.93 -0.40 1.98 16
49 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16
LS Contribution 378.67 15.07 5.71 5.71
Total: -1.00 -31.29 378.67 -10.31 -41.60
By element:
Atomic # 1 Polarization: 14.14 SS G_CDS: -8.52 Total: 5.63 kcal
Atomic # 6 Polarization: -36.92 SS G_CDS: -0.52 Total: -37.43 kcal
Atomic # 7 Polarization: -39.30 SS G_CDS: 0.45 Total: -38.85 kcal
Atomic # 8 Polarization: -44.02 SS G_CDS: -1.85 Total: -45.86 kcal
Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal
Atomic # 16 Polarization: 53.14 SS G_CDS: -0.56 Total: 52.58 kcal
Total LS contribution 5.71 Total: 5.71 kcal
Total: -31.29 -10.31 -41.60 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000451052452.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -26.285 kcal
(2) G-P(sol) polarization free energy of solvation -31.292 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.577 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.306 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.598 kcal
(6) G-S(sol) free energy of system = (1) + (5) -67.883 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds