Wall clock time and date at job start Tue Mar 31 2020 12:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47003 * 2 1 4 4 C 1.53002 * 109.47033 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47028 * 174.82698 * 4 3 2 6 6 C 1.46503 * 119.99968 * 86.39022 * 5 4 3 7 7 H 1.09003 * 109.47173 * 182.05385 * 6 5 4 8 8 C 1.52994 * 109.47223 * 62.04895 * 6 5 4 9 9 C 1.52996 * 109.46687 * 302.04566 * 6 5 4 10 10 C 1.52999 * 109.47746 * 300.04573 * 9 6 5 11 11 S 1.65598 * 120.00016 * 266.38482 * 5 4 3 12 12 O 1.42101 * 104.27920 * 206.07627 * 11 5 4 13 13 O 1.42100 * 104.27599 * 333.92993 * 11 5 4 14 14 C 1.81396 * 104.45115 * 90.00018 * 11 5 4 15 15 C 1.53001 * 109.47331 * 183.18711 * 14 11 5 16 16 C 1.50696 * 115.54723 * 61.26625 * 15 14 11 17 17 H 1.07999 * 119.99850 * 272.86622 * 16 15 14 18 18 C 1.37875 * 120.00320 * 92.86326 * 16 15 14 19 19 N 1.31517 * 119.99803 * 4.39033 * 18 16 15 20 20 Si 1.86800 * 120.00503 * 184.38708 * 18 16 15 21 21 H 1.48504 * 109.46985 * 90.00149 * 20 18 16 22 22 H 1.48499 * 109.47514 * 210.00510 * 20 18 16 23 23 H 1.48505 * 109.46949 * 330.00471 * 20 18 16 24 24 C 1.52996 * 117.49995 * 275.59531 * 15 14 11 25 25 C 1.52999 * 117.50022 * 206.93175 * 15 14 11 26 26 H 1.09001 * 109.47469 * 300.00246 * 1 2 3 27 27 H 1.08999 * 109.47018 * 60.00146 * 1 2 3 28 28 H 1.08996 * 109.47319 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47469 * 239.99754 * 2 1 3 30 30 H 1.08999 * 109.47018 * 119.99854 * 2 1 3 31 31 H 1.09004 * 109.47297 * 60.00362 * 3 2 1 32 32 H 1.09004 * 109.47573 * 299.99833 * 3 2 1 33 33 H 1.09004 * 109.47327 * 294.82569 * 4 3 2 34 34 H 1.09003 * 109.47135 * 54.82879 * 4 3 2 35 35 H 1.08998 * 109.47227 * 60.00557 * 8 6 5 36 36 H 1.09002 * 109.47117 * 180.02562 * 8 6 5 37 37 H 1.08996 * 109.47375 * 299.99440 * 8 6 5 38 38 H 1.09000 * 109.46978 * 60.04576 * 9 6 5 39 39 H 1.09008 * 109.47061 * 180.02562 * 9 6 5 40 40 H 1.08997 * 109.47633 * 180.02562 * 10 9 6 41 41 H 1.09000 * 109.46885 * 300.00060 * 10 9 6 42 42 H 1.09000 * 109.46976 * 59.99829 * 10 9 6 43 43 H 1.08994 * 109.46979 * 303.19232 * 14 11 5 44 44 H 1.09000 * 109.46673 * 63.18946 * 14 11 5 45 45 H 0.97000 * 119.99905 * 184.99877 * 19 18 16 46 46 H 1.09002 * 117.49802 * 359.97438 * 24 15 14 47 47 H 1.08997 * 117.49864 * 145.02139 * 24 15 14 48 48 H 1.08996 * 117.50147 * 214.97830 * 25 15 14 49 49 H 1.09004 * 117.49780 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8181 -0.1239 6 6 4.2267 3.6467 1.0725 7 1 4.5610 4.6424 0.7807 8 6 5.2688 3.0081 1.9927 9 6 2.8910 3.7534 1.8109 10 6 1.8485 4.3910 0.8903 11 16 4.4202 3.4362 -1.6169 12 8 5.3864 4.4445 -1.3540 13 8 4.7461 2.2954 -2.3989 14 6 2.8664 4.1772 -2.1889 15 6 3.0517 4.7194 -3.6075 16 6 3.4146 3.6959 -4.6522 17 1 4.4502 3.4399 -4.8205 18 6 2.4246 3.0862 -5.3933 19 7 1.1717 3.4593 -5.2498 20 14 2.8628 1.7303 -6.6012 21 1 2.8104 0.4165 -5.9108 22 1 1.8937 1.7373 -7.7263 23 1 4.2329 1.9591 -7.1265 24 6 3.6456 6.1216 -3.7559 25 6 2.1602 5.8851 -4.0403 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9564 -0.8900 33 1 3.9330 1.0111 0.9336 34 1 3.9337 0.8504 -0.8392 35 1 6.2203 2.9322 1.4666 36 1 5.3937 3.6244 2.8831 37 1 4.9344 2.0126 2.2846 38 1 2.5570 2.7578 2.1033 39 1 3.0161 4.3703 2.7009 40 1 0.8971 4.4674 1.4166 41 1 2.1825 5.3865 0.5979 42 1 1.7235 3.7738 0.0006 43 1 2.0815 3.4209 -2.1885 44 1 2.5856 4.9924 -1.5220 45 1 0.4673 2.9827 -5.7162 46 1 3.9039 6.6579 -2.8428 47 1 4.2985 6.3039 -4.6094 48 1 1.8366 5.9119 -5.0808 49 1 1.4413 6.2654 -3.3145 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451052452.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:08 Heat of formation + Delta-G solvation = -67.883108 kcal Electronic energy + Delta-G solvation = -27640.074821 eV Core-core repulsion = 24115.655420 eV Total energy + Delta-G solvation = -3524.419401 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -38.39359 -36.72669 -36.39547 -35.06778 -34.72018 -32.22212 -31.96823 -30.22890 -28.25129 -27.96898 -25.43174 -23.89850 -23.21892 -21.13011 -21.07973 -20.47818 -19.41858 -18.31626 -17.37597 -16.50602 -15.80626 -15.16804 -14.98185 -14.73789 -14.49838 -14.36684 -13.96589 -13.82142 -13.68471 -13.29468 -13.05652 -12.84609 -12.64452 -12.23384 -12.05400 -11.80835 -11.77188 -11.53714 -11.46819 -11.35742 -11.24576 -11.05515 -10.99340 -10.87130 -10.86418 -10.84254 -10.79110 -10.55014 -10.40935 -10.27529 -10.16940 -10.01431 -9.60533 -9.06899 -8.74603 -8.43823 -8.01825 -6.09574 -4.20164 1.06424 3.31936 3.33443 3.38647 3.45415 4.41232 4.59837 4.69286 4.81948 4.98188 5.05978 5.09108 5.11995 5.18696 5.21162 5.24785 5.32693 5.43316 5.54549 5.58217 5.64961 5.71642 5.76146 5.76751 5.83804 5.88009 5.92904 5.97186 6.02886 6.05168 6.12907 6.19488 6.24354 6.29379 6.35735 6.37249 6.42210 6.52705 6.54184 6.65573 6.76150 6.99784 7.06449 7.27113 7.56488 7.84023 8.23922 8.86134 9.50297 10.96949 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012091 B = 0.006324 C = 0.005278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2315.232693 B = 4426.247161 C = 5303.592069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.156 4.156 4 C 0.116 3.884 5 N -1.002 6.002 6 C 0.144 3.856 7 H 0.097 0.903 8 C -0.158 4.158 9 C -0.135 4.135 10 C -0.172 4.172 11 S 2.603 3.397 12 O -0.976 6.976 13 O -0.944 6.944 14 C -0.558 4.558 15 C 0.034 3.966 16 C -0.507 4.507 17 H 0.069 0.931 18 C 0.081 3.919 19 N -0.876 5.876 20 Si 0.889 3.111 21 H -0.275 1.275 22 H -0.287 1.287 23 H -0.270 1.270 24 C -0.216 4.216 25 C -0.125 4.125 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.050 0.950 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.058 0.942 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.054 0.946 41 H 0.054 0.946 42 H 0.071 0.929 43 H 0.126 0.874 44 H 0.101 0.899 45 H 0.261 0.739 46 H 0.071 0.929 47 H 0.085 0.915 48 H 0.095 0.905 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.665 -2.329 15.268 15.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.195 4.195 4 C -0.010 4.010 5 N -0.836 5.836 6 C 0.037 3.963 7 H 0.115 0.885 8 C -0.217 4.217 9 C -0.173 4.173 10 C -0.229 4.229 11 S 2.701 3.299 12 O -0.966 6.966 13 O -0.934 6.934 14 C -0.690 4.690 15 C 0.032 3.968 16 C -0.544 4.544 17 H 0.087 0.913 18 C -0.124 4.124 19 N -0.512 5.512 20 Si 0.716 3.284 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.195 1.195 24 C -0.253 4.253 25 C -0.164 4.164 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.112 0.888 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.090 0.910 43 H 0.144 0.856 44 H 0.119 0.881 45 H 0.071 0.929 46 H 0.089 0.911 47 H 0.104 0.896 48 H 0.113 0.887 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.044 -2.399 14.759 14.953 hybrid contribution -0.767 -0.594 -0.432 1.062 sum -0.723 -2.993 14.327 14.654 Atomic orbital electron populations 1.21760 0.95923 1.01302 1.01947 1.21462 0.95913 0.96699 1.02033 1.22527 0.96253 0.97323 1.03382 1.21310 0.93378 0.82520 1.03753 1.57957 1.82254 1.20918 1.22515 1.20858 0.94859 0.94863 0.85702 0.88538 1.22091 0.99284 1.01045 0.99245 1.22020 0.95219 1.01640 0.98461 1.22155 0.98586 1.01167 1.00969 1.05298 0.77717 0.74767 0.72095 1.93482 1.57798 1.61396 1.83931 1.93529 1.82748 1.49177 1.67914 1.30212 1.20224 1.11291 1.07310 1.18340 1.01977 0.87582 0.88943 1.20546 0.93895 1.21903 1.18087 0.91332 1.24917 0.94963 0.96354 0.96129 1.70032 0.99334 1.38646 1.43160 0.86614 0.78537 0.82706 0.80511 1.20057 1.21305 1.19458 1.23261 0.98078 1.02302 1.01696 1.22467 0.90136 1.02152 1.01622 0.93044 0.92347 0.93051 0.91575 0.92258 0.90464 0.91154 0.90633 0.88843 0.92089 0.91902 0.92319 0.90982 0.91410 0.92641 0.92684 0.90999 0.85565 0.88062 0.92913 0.91082 0.89632 0.88697 0.91888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.91 37.16 0.37 -1.29 16 2 C -0.12 -1.40 5.93 -26.73 -0.16 -1.56 16 3 C -0.16 -1.97 3.78 -26.73 -0.10 -2.07 16 4 C 0.12 1.57 5.12 -4.04 -0.02 1.55 16 5 N -1.00 -15.30 2.00 -107.30 -0.21 -15.52 16 6 C 0.14 1.84 2.61 -67.93 -0.18 1.66 16 7 H 0.10 1.34 6.91 -51.93 -0.36 0.98 16 8 C -0.16 -1.72 9.20 37.15 0.34 -1.38 16 9 C -0.13 -1.40 4.86 -26.73 -0.13 -1.53 16 10 C -0.17 -2.00 8.07 37.16 0.30 -1.70 16 11 S 2.60 53.14 5.22 -107.50 -0.56 52.58 16 12 O -0.98 -21.52 16.59 -57.54 -0.95 -22.48 16 13 O -0.94 -22.49 15.51 -57.54 -0.89 -23.39 16 14 C -0.56 -11.52 4.68 37.16 0.17 -11.35 16 15 C 0.03 0.83 1.61 -155.66 -0.25 0.58 16 16 C -0.51 -13.95 7.60 -34.44 -0.26 -14.21 16 17 H 0.07 1.96 7.78 -52.49 -0.41 1.55 16 18 C 0.08 2.20 5.41 -17.82 -0.10 2.11 16 19 N -0.88 -24.00 11.97 55.43 0.66 -23.33 16 20 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 21 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 24 C -0.22 -4.84 9.95 -26.69 -0.27 -5.11 16 25 C -0.12 -2.90 8.88 -26.69 -0.24 -3.13 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.08 0.85 4.49 -51.93 -0.23 0.62 16 32 H 0.07 1.04 6.00 -51.93 -0.31 0.72 16 33 H 0.08 0.83 6.54 -51.93 -0.34 0.49 16 34 H 0.09 1.44 6.84 -51.93 -0.36 1.08 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.57 6.75 -51.93 -0.35 0.22 16 38 H 0.07 0.69 5.89 -51.93 -0.31 0.39 16 39 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 40 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.05 0.65 7.70 -51.93 -0.40 0.25 16 42 H 0.07 0.93 3.30 -51.93 -0.17 0.76 16 43 H 0.13 2.62 6.44 -51.93 -0.33 2.29 16 44 H 0.10 1.80 6.52 -51.92 -0.34 1.47 16 45 H 0.26 6.84 8.32 -40.82 -0.34 6.50 16 46 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 47 H 0.09 1.91 8.14 -51.93 -0.42 1.49 16 48 H 0.09 2.38 7.69 -51.93 -0.40 1.98 16 49 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 LS Contribution 378.67 15.07 5.71 5.71 Total: -1.00 -31.29 378.67 -10.31 -41.60 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -8.52 Total: 5.63 kcal Atomic # 6 Polarization: -36.92 SS G_CDS: -0.52 Total: -37.43 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: 0.45 Total: -38.85 kcal Atomic # 8 Polarization: -44.02 SS G_CDS: -1.85 Total: -45.86 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: 53.14 SS G_CDS: -0.56 Total: 52.58 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.29 -10.31 -41.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451052452.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.285 kcal (2) G-P(sol) polarization free energy of solvation -31.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds