Wall clock time and date at job start Tue Mar 31 2020 12:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47003 * 2 1 4 4 C 1.53002 * 109.47033 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47028 * 174.82698 * 4 3 2 6 6 C 1.46503 * 119.99968 * 86.39022 * 5 4 3 7 7 H 1.09003 * 109.47173 * 182.05385 * 6 5 4 8 8 C 1.52994 * 109.47223 * 62.04895 * 6 5 4 9 9 C 1.52996 * 109.46687 * 302.04566 * 6 5 4 10 10 C 1.52999 * 109.47746 * 300.04573 * 9 6 5 11 11 S 1.65598 * 120.00016 * 266.38482 * 5 4 3 12 12 O 1.42101 * 104.27920 * 206.07627 * 11 5 4 13 13 O 1.42100 * 104.27599 * 333.92993 * 11 5 4 14 14 C 1.81396 * 104.45115 * 90.00018 * 11 5 4 15 15 C 1.53001 * 109.47331 * 183.18711 * 14 11 5 16 16 C 1.50696 * 115.54723 * 61.26625 * 15 14 11 17 17 H 1.07999 * 119.99850 * 272.86622 * 16 15 14 18 18 C 1.37875 * 120.00320 * 92.86326 * 16 15 14 19 19 N 1.31517 * 119.99803 * 4.39033 * 18 16 15 20 20 Si 1.86800 * 120.00503 * 184.38708 * 18 16 15 21 21 H 1.48504 * 109.46985 * 90.00149 * 20 18 16 22 22 H 1.48499 * 109.47514 * 210.00510 * 20 18 16 23 23 H 1.48505 * 109.46949 * 330.00471 * 20 18 16 24 24 C 1.52996 * 117.49995 * 275.59531 * 15 14 11 25 25 C 1.52999 * 117.50022 * 206.93175 * 15 14 11 26 26 H 1.09001 * 109.47469 * 300.00246 * 1 2 3 27 27 H 1.08999 * 109.47018 * 60.00146 * 1 2 3 28 28 H 1.08996 * 109.47319 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47469 * 239.99754 * 2 1 3 30 30 H 1.08999 * 109.47018 * 119.99854 * 2 1 3 31 31 H 1.09004 * 109.47297 * 60.00362 * 3 2 1 32 32 H 1.09004 * 109.47573 * 299.99833 * 3 2 1 33 33 H 1.09004 * 109.47327 * 294.82569 * 4 3 2 34 34 H 1.09003 * 109.47135 * 54.82879 * 4 3 2 35 35 H 1.08998 * 109.47227 * 60.00557 * 8 6 5 36 36 H 1.09002 * 109.47117 * 180.02562 * 8 6 5 37 37 H 1.08996 * 109.47375 * 299.99440 * 8 6 5 38 38 H 1.09000 * 109.46978 * 60.04576 * 9 6 5 39 39 H 1.09008 * 109.47061 * 180.02562 * 9 6 5 40 40 H 1.08997 * 109.47633 * 180.02562 * 10 9 6 41 41 H 1.09000 * 109.46885 * 300.00060 * 10 9 6 42 42 H 1.09000 * 109.46976 * 59.99829 * 10 9 6 43 43 H 1.08994 * 109.46979 * 303.19232 * 14 11 5 44 44 H 1.09000 * 109.46673 * 63.18946 * 14 11 5 45 45 H 0.97000 * 119.99905 * 184.99877 * 19 18 16 46 46 H 1.09002 * 117.49802 * 359.97438 * 24 15 14 47 47 H 1.08997 * 117.49864 * 145.02139 * 24 15 14 48 48 H 1.08996 * 117.50147 * 214.97830 * 25 15 14 49 49 H 1.09004 * 117.49780 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8181 -0.1239 6 6 4.2267 3.6467 1.0725 7 1 4.5610 4.6424 0.7807 8 6 5.2688 3.0081 1.9927 9 6 2.8910 3.7534 1.8109 10 6 1.8485 4.3910 0.8903 11 16 4.4202 3.4362 -1.6169 12 8 5.3864 4.4445 -1.3540 13 8 4.7461 2.2954 -2.3989 14 6 2.8664 4.1772 -2.1889 15 6 3.0517 4.7194 -3.6075 16 6 3.4146 3.6959 -4.6522 17 1 4.4502 3.4399 -4.8205 18 6 2.4246 3.0862 -5.3933 19 7 1.1717 3.4593 -5.2498 20 14 2.8628 1.7303 -6.6012 21 1 2.8104 0.4165 -5.9108 22 1 1.8937 1.7373 -7.7263 23 1 4.2329 1.9591 -7.1265 24 6 3.6456 6.1216 -3.7559 25 6 2.1602 5.8851 -4.0403 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9564 -0.8900 33 1 3.9330 1.0111 0.9336 34 1 3.9337 0.8504 -0.8392 35 1 6.2203 2.9322 1.4666 36 1 5.3937 3.6244 2.8831 37 1 4.9344 2.0126 2.2846 38 1 2.5570 2.7578 2.1033 39 1 3.0161 4.3703 2.7009 40 1 0.8971 4.4674 1.4166 41 1 2.1825 5.3865 0.5979 42 1 1.7235 3.7738 0.0006 43 1 2.0815 3.4209 -2.1885 44 1 2.5856 4.9924 -1.5220 45 1 0.4673 2.9827 -5.7162 46 1 3.9039 6.6579 -2.8428 47 1 4.2985 6.3039 -4.6094 48 1 1.8366 5.9119 -5.0808 49 1 1.4413 6.2654 -3.3145 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451052452.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:07 Heat of formation + Delta-G solvation = -86.012574 kcal Electronic energy + Delta-G solvation = -27640.860974 eV Core-core repulsion = 24115.655420 eV Total energy + Delta-G solvation = -3525.205554 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.44619 -38.58939 -38.07379 -36.79131 -35.68953 -34.05342 -33.24126 -31.18620 -29.83993 -29.06773 -27.48427 -24.83261 -24.20703 -22.96720 -22.04565 -21.69019 -21.17522 -19.64233 -18.85119 -18.39375 -17.17449 -16.86047 -16.69555 -16.15937 -15.76628 -15.66104 -15.38548 -15.05394 -14.81337 -14.63301 -14.20491 -13.93189 -13.84117 -13.70690 -13.56984 -13.20616 -13.14265 -12.96375 -12.89863 -12.89268 -12.74923 -12.51750 -12.43353 -12.36912 -12.21404 -12.16636 -11.90419 -11.82749 -11.76113 -11.69660 -11.48961 -11.31872 -11.13117 -11.02346 -10.46353 -10.10014 -9.69907 -8.18740 -6.33227 -0.52393 1.35450 1.38309 1.47391 1.91909 2.38928 2.98346 3.06923 3.32214 3.41254 3.64511 3.99125 4.01366 4.07629 4.15717 4.19755 4.26392 4.27829 4.39017 4.49729 4.55530 4.57285 4.65856 4.71871 4.72827 4.81031 4.82300 4.86533 4.94551 4.95858 4.98122 5.03928 5.14928 5.17398 5.20729 5.22588 5.33229 5.39364 5.42392 5.45541 5.50782 5.52331 5.61947 5.66236 5.70704 5.89502 6.22096 6.72585 7.37946 8.87156 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012091 B = 0.006324 C = 0.005278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2315.232693 B = 4426.247161 C = 5303.592069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.152 4.152 4 C 0.112 3.888 5 N -0.990 5.990 6 C 0.132 3.868 7 H 0.083 0.917 8 C -0.156 4.156 9 C -0.126 4.126 10 C -0.180 4.180 11 S 2.612 3.388 12 O -0.997 6.997 13 O -0.987 6.987 14 C -0.550 4.550 15 C 0.004 3.996 16 C -0.525 4.525 17 H 0.045 0.955 18 C 0.044 3.956 19 N -0.891 5.891 20 Si 0.930 3.070 21 H -0.275 1.275 22 H -0.273 1.273 23 H -0.274 1.274 24 C -0.206 4.206 25 C -0.121 4.121 26 H 0.066 0.934 27 H 0.036 0.964 28 H 0.061 0.939 29 H 0.047 0.953 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.042 0.958 33 H 0.111 0.889 34 H 0.068 0.932 35 H 0.041 0.959 36 H 0.088 0.912 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.071 0.929 41 H 0.049 0.951 42 H 0.053 0.947 43 H 0.121 0.879 44 H 0.129 0.871 45 H 0.264 0.736 46 H 0.096 0.904 47 H 0.079 0.921 48 H 0.071 0.929 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.383 -2.576 18.219 18.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.190 4.190 4 C -0.013 4.013 5 N -0.828 5.828 6 C 0.027 3.973 7 H 0.101 0.899 8 C -0.215 4.215 9 C -0.165 4.165 10 C -0.237 4.237 11 S 2.710 3.290 12 O -0.987 6.987 13 O -0.977 6.977 14 C -0.683 4.683 15 C 0.002 3.998 16 C -0.562 4.562 17 H 0.063 0.937 18 C -0.158 4.158 19 N -0.527 5.527 20 Si 0.755 3.245 21 H -0.200 1.200 22 H -0.198 1.198 23 H -0.199 1.199 24 C -0.244 4.244 25 C -0.160 4.160 26 H 0.085 0.915 27 H 0.055 0.945 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.104 0.896 31 H 0.118 0.882 32 H 0.060 0.940 33 H 0.129 0.871 34 H 0.087 0.913 35 H 0.060 0.940 36 H 0.107 0.893 37 H 0.094 0.906 38 H 0.105 0.895 39 H 0.112 0.888 40 H 0.090 0.910 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.139 0.861 44 H 0.147 0.853 45 H 0.073 0.927 46 H 0.114 0.886 47 H 0.098 0.902 48 H 0.089 0.911 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.676 -2.636 17.693 17.901 hybrid contribution -0.521 -0.498 -1.286 1.474 sum -1.197 -3.133 16.407 16.746 Atomic orbital electron populations 1.21755 0.95477 1.01963 1.01657 1.21483 0.96304 0.95899 1.02446 1.22502 0.95315 0.98124 1.03097 1.21498 0.94166 0.81187 1.04445 1.57570 1.82160 1.21701 1.21367 1.21205 0.97180 0.93966 0.84937 0.89890 1.22106 0.97582 1.02408 0.99409 1.21995 0.93026 1.02932 0.98537 1.22219 0.99964 1.00662 1.00848 1.04667 0.77422 0.73907 0.72965 1.93442 1.58692 1.62049 1.84543 1.93469 1.83526 1.50584 1.70164 1.30075 1.20433 1.12051 1.05701 1.18478 1.03432 0.87736 0.90172 1.20664 0.92905 1.23174 1.19501 0.93694 1.25431 0.95108 0.97896 0.97378 1.70071 0.99599 1.39211 1.43827 0.85988 0.78345 0.80742 0.79414 1.20016 1.19803 1.19886 1.23301 0.97448 1.01120 1.02495 1.22375 0.90971 1.01850 1.00806 0.91472 0.94470 0.91966 0.93400 0.89626 0.88198 0.93960 0.87066 0.91341 0.94004 0.89304 0.90622 0.89492 0.88805 0.90981 0.93216 0.92785 0.86124 0.85328 0.92661 0.88617 0.90244 0.91087 0.89723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.05 9.91 71.98 0.71 -2.33 16 2 C -0.12 -2.61 5.93 30.59 0.18 -2.43 16 3 C -0.15 -3.60 3.78 30.59 0.12 -3.48 16 4 C 0.11 2.89 5.12 86.38 0.44 3.33 16 5 N -0.99 -29.25 2.00 -493.39 -0.99 -30.24 16 6 C 0.13 3.06 2.61 44.99 0.12 3.18 16 7 H 0.08 2.16 6.91 -2.39 -0.02 2.15 16 8 C -0.16 -2.92 9.20 71.98 0.66 -2.26 16 9 C -0.13 -2.14 4.86 30.59 0.15 -1.99 16 10 C -0.18 -3.69 8.07 71.98 0.58 -3.11 16 11 S 2.61 108.20 5.22 -56.49 -0.30 107.90 16 12 O -1.00 -44.33 16.59 -127.65 -2.12 -46.45 16 13 O -0.99 -48.96 15.51 -127.65 -1.98 -50.94 16 14 C -0.55 -22.87 4.68 71.98 0.34 -22.53 16 15 C 0.00 0.19 1.61 -52.93 -0.09 0.11 16 16 C -0.52 -29.82 7.60 25.60 0.19 -29.63 16 17 H 0.04 2.70 7.78 -2.91 -0.02 2.67 16 18 C 0.04 2.48 5.41 84.65 0.46 2.94 16 19 N -0.89 -49.55 11.97 21.45 0.26 -49.29 16 20 Si 0.93 45.14 29.54 68.60 2.03 47.17 16 21 H -0.27 -13.22 7.11 99.48 0.71 -12.52 16 22 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 23 H -0.27 -13.36 7.11 99.48 0.71 -12.65 16 24 C -0.21 -9.23 9.95 30.62 0.30 -8.93 16 25 C -0.12 -5.63 8.88 30.62 0.27 -5.36 16 26 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.10 1.88 4.49 -2.38 -0.01 1.87 16 32 H 0.04 1.25 6.00 -2.39 -0.01 1.23 16 33 H 0.11 2.08 6.54 -2.39 -0.02 2.07 16 34 H 0.07 2.14 6.84 -2.39 -0.02 2.12 16 35 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.07 1.15 6.75 -2.39 -0.02 1.13 16 38 H 0.09 1.24 5.89 -2.39 -0.01 1.23 16 39 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 40 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.05 1.06 7.70 -2.39 -0.02 1.04 16 42 H 0.05 1.31 3.30 -2.39 -0.01 1.30 16 43 H 0.12 5.14 6.44 -2.39 -0.02 5.12 16 44 H 0.13 4.48 6.52 -2.39 -0.02 4.46 16 45 H 0.26 13.97 8.32 -92.71 -0.77 13.20 16 46 H 0.10 3.76 8.14 -2.39 -0.02 3.74 16 47 H 0.08 3.59 8.14 -2.39 -0.02 3.57 16 48 H 0.07 3.62 7.69 -2.39 -0.02 3.61 16 49 H 0.08 3.50 8.14 -2.38 -0.02 3.48 16 Total: -1.00 -69.52 378.67 2.26 -67.26 By element: Atomic # 1 Polarization: 26.17 SS G_CDS: 0.91 Total: 27.08 kcal Atomic # 6 Polarization: -76.93 SS G_CDS: 4.44 Total: -72.49 kcal Atomic # 7 Polarization: -78.80 SS G_CDS: -0.73 Total: -79.53 kcal Atomic # 8 Polarization: -93.29 SS G_CDS: -4.10 Total: -97.39 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Atomic # 16 Polarization: 108.20 SS G_CDS: -0.30 Total: 107.90 kcal Total: -69.52 2.26 -67.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451052452.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.750 kcal (2) G-P(sol) polarization free energy of solvation -69.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds