Wall clock time and date at job start Tue Mar 31 2020 11:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46977 * 2 1 4 4 C 1.52994 * 109.46900 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47142 * 180.02562 * 4 3 2 6 6 N 1.46504 * 109.47140 * 185.17957 * 5 4 3 7 7 C 1.46495 * 119.99810 * 273.50853 * 6 5 4 8 8 C 1.53005 * 109.47478 * 303.52915 * 7 6 5 9 9 C 1.52996 * 109.47322 * 63.52524 * 7 6 5 10 10 S 1.65595 * 120.00092 * 93.51070 * 6 5 4 11 11 O 1.42096 * 104.27929 * 333.92892 * 10 6 5 12 12 O 1.42095 * 104.27761 * 206.06939 * 10 6 5 13 13 C 1.81403 * 104.44925 * 89.99749 * 10 6 5 14 14 C 1.53002 * 109.47350 * 186.18433 * 13 10 6 15 15 C 1.50691 * 115.55212 * 299.41372 * 14 13 10 16 16 H 1.08000 * 120.00416 * 95.43667 * 15 14 13 17 17 C 1.37880 * 120.00092 * 275.16119 * 15 14 13 18 18 N 1.31520 * 119.99477 * 355.73642 * 17 15 14 19 19 Si 1.86794 * 120.00490 * 175.73396 * 17 15 14 20 20 H 1.48501 * 109.47086 * 60.00411 * 19 17 15 21 21 H 1.48498 * 109.47350 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47503 * 300.00478 * 19 17 15 23 23 C 1.53008 * 117.49262 * 85.07774 * 14 13 10 24 24 C 1.53000 * 117.49923 * 153.73292 * 14 13 10 25 25 H 1.08998 * 109.46923 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.46943 * 299.99875 * 1 2 3 27 27 H 1.08994 * 109.47318 * 59.99942 * 1 2 3 28 28 H 1.08999 * 109.46524 * 240.00401 * 2 1 3 29 29 H 1.08998 * 109.46830 * 120.00062 * 2 1 3 30 30 H 1.09001 * 109.46763 * 60.00142 * 3 2 1 31 31 H 1.08994 * 109.47144 * 300.00164 * 3 2 1 32 32 H 1.09001 * 109.47358 * 60.00431 * 4 3 2 33 33 H 1.09003 * 109.47482 * 299.99849 * 4 3 2 34 34 H 1.08996 * 109.47242 * 65.17413 * 5 4 3 35 35 H 1.09002 * 109.46997 * 305.17366 * 5 4 3 36 36 H 1.08999 * 109.47291 * 183.52726 * 7 6 5 37 37 H 1.08999 * 109.47014 * 59.99641 * 8 7 6 38 38 H 1.08992 * 109.47658 * 179.97438 * 8 7 6 39 39 H 1.09002 * 109.46825 * 300.00359 * 8 7 6 40 40 H 1.09006 * 109.47307 * 52.74096 * 9 7 6 41 41 H 1.09000 * 109.47746 * 172.74393 * 9 7 6 42 42 H 1.09000 * 109.47589 * 292.74865 * 9 7 6 43 43 H 1.09005 * 109.46662 * 66.18957 * 13 10 6 44 44 H 1.08997 * 109.47165 * 306.19165 * 13 10 6 45 45 H 0.97003 * 119.99658 * 184.99698 * 18 17 15 46 46 H 1.09003 * 117.49670 * 215.00767 * 23 14 13 47 47 H 1.08998 * 117.49909 * 0.02562 * 23 14 13 48 48 H 1.08998 * 117.49618 * 359.97438 * 24 14 13 49 49 H 1.09004 * 117.49666 * 144.97538 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8850 0.0000 6 7 5.5397 2.8869 -0.1253 7 6 6.3776 2.7714 1.0707 8 6 6.0237 3.8911 2.0516 9 6 6.1335 1.4152 1.7355 10 16 6.2423 3.0197 -1.6189 11 8 5.2670 2.5006 -2.5125 12 8 7.5071 2.3898 -1.4684 13 6 6.4458 4.8053 -1.8663 14 6 6.9493 5.0693 -3.2868 15 6 8.2797 4.4507 -3.6303 16 1 8.3175 3.4948 -4.1316 17 6 9.4488 5.1076 -3.3098 18 7 9.4031 6.3108 -2.7806 19 14 11.0975 4.2889 -3.6270 20 1 11.2352 3.9986 -5.0768 21 1 12.1917 5.1963 -3.1974 22 1 11.1764 3.0206 -2.8586 23 6 5.9044 5.1617 -4.4007 24 6 6.6178 6.4253 -3.9131 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 3.9330 0.9289 -0.8909 33 1 3.9338 0.9285 0.8891 34 1 3.7947 3.3708 0.9331 35 1 3.6426 3.4254 -0.8395 36 1 7.4272 2.8540 0.7885 37 1 4.9742 3.8086 2.3339 38 1 6.6469 3.8050 2.9417 39 1 6.1976 4.8574 1.5780 40 1 6.2611 0.6215 0.9994 41 1 6.8464 1.2752 2.5481 42 1 5.1190 1.3826 2.1327 43 1 7.1682 5.1916 -1.1471 44 1 5.4873 5.3036 -1.7219 45 1 10.2241 6.8024 -2.6221 46 1 6.1794 4.7751 -5.3820 47 1 4.8585 5.0349 -4.1214 48 1 6.0407 7.1290 -3.3134 49 1 7.3623 6.8702 -4.5733 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451087915.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:09 Heat of formation + Delta-G solvation = -74.655167 kcal Electronic energy + Delta-G solvation = -26621.266879 eV Core-core repulsion = 23096.553820 eV Total energy + Delta-G solvation = -3524.713060 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -37.96983 -36.72035 -36.34987 -35.46519 -34.99961 -32.14647 -32.01713 -29.98209 -28.17416 -27.13366 -25.86084 -25.40996 -22.17017 -21.16604 -20.98458 -20.77005 -19.43586 -18.23710 -17.29945 -16.43471 -15.90941 -15.41874 -15.10808 -14.70237 -14.41337 -14.06708 -13.90282 -13.81138 -13.70545 -13.52350 -13.10653 -13.06657 -12.48860 -12.28439 -12.02071 -12.01411 -11.88932 -11.79396 -11.30871 -11.26924 -11.21289 -11.17342 -11.05117 -11.00368 -10.87375 -10.85323 -10.71321 -10.55993 -10.46954 -10.37679 -10.25612 -10.05755 -9.63197 -9.03969 -8.77909 -8.51104 -8.03802 -6.11485 -4.24446 1.08511 3.34072 3.35883 3.36981 3.46139 4.39623 4.61769 4.74518 4.77837 4.89556 4.90867 5.04678 5.14837 5.18228 5.19604 5.24740 5.29354 5.41638 5.45014 5.52004 5.62781 5.64945 5.68096 5.72336 5.78270 5.83178 5.89313 5.90329 5.96242 6.00667 6.02640 6.09536 6.19526 6.27431 6.32455 6.37230 6.37930 6.47723 6.54202 6.64472 6.74323 6.97960 7.03860 7.24494 7.47027 7.81038 8.21581 8.81306 9.47865 10.95041 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017126 B = 0.004246 C = 0.003882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.508415 B = 6593.101142 C = 7210.322649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.118 4.118 4 C -0.146 4.146 5 C 0.126 3.874 6 N -1.006 6.006 7 C 0.139 3.861 8 C -0.163 4.163 9 C -0.158 4.158 10 S 2.606 3.394 11 O -0.968 6.968 12 O -0.948 6.948 13 C -0.557 4.557 14 C 0.041 3.959 15 C -0.518 4.518 16 H 0.067 0.933 17 C 0.083 3.917 18 N -0.875 5.875 19 Si 0.889 3.111 20 H -0.274 1.274 21 H -0.286 1.286 22 H -0.266 1.266 23 C -0.208 4.208 24 C -0.135 4.135 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.101 0.899 37 H 0.058 0.942 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.127 0.873 44 H 0.097 0.903 45 H 0.263 0.737 46 H 0.085 0.915 47 H 0.072 0.928 48 H 0.064 0.936 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.681 -5.710 10.583 17.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.156 4.156 4 C -0.185 4.185 5 C 0.001 3.999 6 N -0.841 5.841 7 C 0.033 3.967 8 C -0.222 4.222 9 C -0.217 4.217 10 S 2.705 3.295 11 O -0.959 6.959 12 O -0.938 6.938 13 C -0.689 4.689 14 C 0.038 3.962 15 C -0.555 4.555 16 H 0.085 0.915 17 C -0.122 4.122 18 N -0.510 5.510 19 Si 0.715 3.285 20 H -0.199 1.199 21 H -0.211 1.211 22 H -0.191 1.191 23 C -0.245 4.245 24 C -0.174 4.174 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.119 0.881 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.145 0.855 44 H 0.115 0.885 45 H 0.073 0.927 46 H 0.104 0.896 47 H 0.090 0.910 48 H 0.082 0.918 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -12.329 -6.329 10.190 17.202 hybrid contribution 0.817 0.484 0.154 0.962 sum -11.513 -5.845 10.344 16.544 Atomic orbital electron populations 1.21779 0.96144 1.01329 1.01704 1.21527 0.95535 0.97166 1.02044 1.21556 0.95347 0.96737 1.01973 1.22246 0.95132 0.97787 1.03324 1.21147 0.79379 0.96946 1.02465 1.58103 1.13187 1.89160 1.23627 1.20805 0.95421 0.95088 0.85362 1.22184 1.01824 0.98944 0.99244 1.22241 1.01608 0.97219 1.00630 1.05252 0.73555 0.78742 0.71990 1.93486 1.61350 1.78014 1.63011 1.93526 1.42467 1.73602 1.84239 1.30053 1.07355 1.22896 1.08615 1.18265 0.93809 0.99468 0.84631 1.20491 0.88326 1.06208 1.40465 0.91535 1.24946 0.99279 0.94643 0.93374 1.69998 1.28213 1.10897 1.41874 0.86681 0.82593 0.80132 0.79076 1.19945 1.21120 1.19065 1.23167 0.96038 1.04968 1.00314 1.22507 1.01199 0.90300 1.03421 0.93036 0.92949 0.92705 0.91874 0.92262 0.92221 0.91695 0.90869 0.91222 0.90813 0.90598 0.88119 0.92276 0.91719 0.91978 0.92072 0.92050 0.92197 0.85453 0.88492 0.92722 0.89633 0.90984 0.91764 0.89286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.91 37.16 0.37 -0.87 16 2 C -0.13 -1.18 5.93 -26.73 -0.16 -1.34 16 3 C -0.12 -1.19 5.21 -26.73 -0.14 -1.33 16 4 C -0.15 -1.78 5.13 -26.73 -0.14 -1.92 16 5 C 0.13 1.62 4.87 -4.04 -0.02 1.60 16 6 N -1.01 -15.56 2.66 -107.30 -0.29 -15.85 16 7 C 0.14 1.93 3.15 -67.93 -0.21 1.71 16 8 C -0.16 -1.81 9.09 37.16 0.34 -1.47 16 9 C -0.16 -1.86 8.07 37.16 0.30 -1.56 16 10 S 2.61 53.77 5.00 -107.50 -0.54 53.23 16 11 O -0.97 -21.36 16.60 -57.54 -0.96 -22.31 16 12 O -0.95 -22.87 16.12 -57.54 -0.93 -23.80 16 13 C -0.56 -11.81 6.05 37.16 0.22 -11.59 16 14 C 0.04 1.00 1.47 -155.66 -0.23 0.77 16 15 C -0.52 -14.36 7.91 -34.44 -0.27 -14.63 16 16 H 0.07 1.89 7.82 -52.49 -0.41 1.48 16 17 C 0.08 2.28 5.43 -17.82 -0.10 2.18 16 18 N -0.87 -24.25 12.67 55.43 0.70 -23.54 16 19 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 20 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 23 C -0.21 -4.63 9.95 -26.69 -0.27 -4.89 16 24 C -0.14 -3.13 9.18 -26.69 -0.25 -3.38 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.07 1.08 7.73 -51.93 -0.40 0.68 16 33 H 0.07 0.77 5.42 -51.93 -0.28 0.49 16 34 H 0.07 0.76 6.27 -51.93 -0.33 0.43 16 35 H 0.08 0.99 7.66 -51.93 -0.40 0.59 16 36 H 0.10 1.58 6.94 -51.93 -0.36 1.22 16 37 H 0.06 0.57 6.59 -51.93 -0.34 0.23 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.61 6.33 -51.93 -0.33 0.28 16 43 H 0.13 2.79 8.14 -51.92 -0.42 2.36 16 44 H 0.10 1.74 8.11 -51.93 -0.42 1.32 16 45 H 0.26 6.96 8.32 -40.82 -0.34 6.62 16 46 H 0.09 1.89 8.14 -51.93 -0.42 1.47 16 47 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 48 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 49 H 0.09 2.19 8.14 -51.93 -0.42 1.77 16 LS Contribution 396.72 15.07 5.98 5.98 Total: -1.00 -31.69 396.72 -10.76 -42.45 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -9.17 Total: 3.91 kcal Atomic # 6 Polarization: -36.17 SS G_CDS: -0.55 Total: -36.72 kcal Atomic # 7 Polarization: -39.81 SS G_CDS: 0.42 Total: -39.39 kcal Atomic # 8 Polarization: -44.23 SS G_CDS: -1.88 Total: -46.11 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: 53.77 SS G_CDS: -0.54 Total: 53.23 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.69 -10.76 -42.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451087915.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.204 kcal (2) G-P(sol) polarization free energy of solvation -31.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds