Wall clock time and date at job start Tue Mar 31 2020 11:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46977 * 2 1 4 4 C 1.52994 * 109.46900 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47142 * 180.02562 * 4 3 2 6 6 N 1.46504 * 109.47140 * 185.17957 * 5 4 3 7 7 C 1.46495 * 119.99810 * 273.50853 * 6 5 4 8 8 C 1.53005 * 109.47478 * 303.52915 * 7 6 5 9 9 C 1.52996 * 109.47322 * 63.52524 * 7 6 5 10 10 S 1.65595 * 120.00092 * 93.51070 * 6 5 4 11 11 O 1.42096 * 104.27929 * 333.92892 * 10 6 5 12 12 O 1.42095 * 104.27761 * 206.06939 * 10 6 5 13 13 C 1.81403 * 104.44925 * 89.99749 * 10 6 5 14 14 C 1.53002 * 109.47350 * 186.18433 * 13 10 6 15 15 C 1.50691 * 115.55212 * 299.41372 * 14 13 10 16 16 H 1.08000 * 120.00416 * 95.43667 * 15 14 13 17 17 C 1.37880 * 120.00092 * 275.16119 * 15 14 13 18 18 N 1.31520 * 119.99477 * 355.73642 * 17 15 14 19 19 Si 1.86794 * 120.00490 * 175.73396 * 17 15 14 20 20 H 1.48501 * 109.47086 * 60.00411 * 19 17 15 21 21 H 1.48498 * 109.47350 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47503 * 300.00478 * 19 17 15 23 23 C 1.53008 * 117.49262 * 85.07774 * 14 13 10 24 24 C 1.53000 * 117.49923 * 153.73292 * 14 13 10 25 25 H 1.08998 * 109.46923 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.46943 * 299.99875 * 1 2 3 27 27 H 1.08994 * 109.47318 * 59.99942 * 1 2 3 28 28 H 1.08999 * 109.46524 * 240.00401 * 2 1 3 29 29 H 1.08998 * 109.46830 * 120.00062 * 2 1 3 30 30 H 1.09001 * 109.46763 * 60.00142 * 3 2 1 31 31 H 1.08994 * 109.47144 * 300.00164 * 3 2 1 32 32 H 1.09001 * 109.47358 * 60.00431 * 4 3 2 33 33 H 1.09003 * 109.47482 * 299.99849 * 4 3 2 34 34 H 1.08996 * 109.47242 * 65.17413 * 5 4 3 35 35 H 1.09002 * 109.46997 * 305.17366 * 5 4 3 36 36 H 1.08999 * 109.47291 * 183.52726 * 7 6 5 37 37 H 1.08999 * 109.47014 * 59.99641 * 8 7 6 38 38 H 1.08992 * 109.47658 * 179.97438 * 8 7 6 39 39 H 1.09002 * 109.46825 * 300.00359 * 8 7 6 40 40 H 1.09006 * 109.47307 * 52.74096 * 9 7 6 41 41 H 1.09000 * 109.47746 * 172.74393 * 9 7 6 42 42 H 1.09000 * 109.47589 * 292.74865 * 9 7 6 43 43 H 1.09005 * 109.46662 * 66.18957 * 13 10 6 44 44 H 1.08997 * 109.47165 * 306.19165 * 13 10 6 45 45 H 0.97003 * 119.99658 * 184.99698 * 18 17 15 46 46 H 1.09003 * 117.49670 * 215.00767 * 23 14 13 47 47 H 1.08998 * 117.49909 * 0.02562 * 23 14 13 48 48 H 1.08998 * 117.49618 * 359.97438 * 24 14 13 49 49 H 1.09004 * 117.49666 * 144.97538 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8850 0.0000 6 7 5.5397 2.8869 -0.1253 7 6 6.3776 2.7714 1.0707 8 6 6.0237 3.8911 2.0516 9 6 6.1335 1.4152 1.7355 10 16 6.2423 3.0197 -1.6189 11 8 5.2670 2.5006 -2.5125 12 8 7.5071 2.3898 -1.4684 13 6 6.4458 4.8053 -1.8663 14 6 6.9493 5.0693 -3.2868 15 6 8.2797 4.4507 -3.6303 16 1 8.3175 3.4948 -4.1316 17 6 9.4488 5.1076 -3.3098 18 7 9.4031 6.3108 -2.7806 19 14 11.0975 4.2889 -3.6270 20 1 11.2352 3.9986 -5.0768 21 1 12.1917 5.1963 -3.1974 22 1 11.1764 3.0206 -2.8586 23 6 5.9044 5.1617 -4.4007 24 6 6.6178 6.4253 -3.9131 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 3.9330 0.9289 -0.8909 33 1 3.9338 0.9285 0.8891 34 1 3.7947 3.3708 0.9331 35 1 3.6426 3.4254 -0.8395 36 1 7.4272 2.8540 0.7885 37 1 4.9742 3.8086 2.3339 38 1 6.6469 3.8050 2.9417 39 1 6.1976 4.8574 1.5780 40 1 6.2611 0.6215 0.9994 41 1 6.8464 1.2752 2.5481 42 1 5.1190 1.3826 2.1327 43 1 7.1682 5.1916 -1.1471 44 1 5.4873 5.3036 -1.7219 45 1 10.2241 6.8024 -2.6221 46 1 6.1794 4.7751 -5.3820 47 1 4.8585 5.0349 -4.1214 48 1 6.0407 7.1290 -3.3134 49 1 7.3623 6.8702 -4.5733 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451087915.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:08 Heat of formation + Delta-G solvation = -92.954081 kcal Electronic energy + Delta-G solvation = -26622.060380 eV Core-core repulsion = 23096.553820 eV Total energy + Delta-G solvation = -3525.506560 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.05021 -38.56707 -38.03083 -36.73712 -36.33742 -34.10202 -33.08949 -30.98691 -29.87821 -28.04207 -27.52016 -26.71522 -23.06245 -22.97332 -22.03987 -21.80441 -21.22441 -19.62151 -18.76778 -18.35242 -17.19036 -16.84511 -16.64978 -16.40099 -15.83128 -15.60470 -15.14378 -14.90684 -14.86993 -14.62915 -14.38054 -13.95631 -13.81198 -13.72932 -13.51141 -13.22542 -13.12225 -12.93922 -12.91037 -12.85860 -12.81894 -12.70565 -12.44937 -12.30238 -12.23843 -12.16682 -11.97457 -11.90282 -11.68838 -11.60458 -11.52297 -11.39115 -11.18431 -10.99650 -10.53454 -10.14096 -9.72532 -8.21178 -6.38074 -0.51885 1.34896 1.39250 1.47337 1.95670 2.37410 3.01644 3.06290 3.32691 3.42548 3.65732 3.93263 3.98994 4.08842 4.20216 4.23237 4.27272 4.28717 4.37036 4.49284 4.52686 4.57559 4.61322 4.64239 4.79416 4.81488 4.82936 4.86233 4.90664 4.96135 4.99747 5.03269 5.10812 5.16990 5.20064 5.22843 5.28070 5.41167 5.42338 5.43943 5.46314 5.54377 5.59161 5.61059 5.68303 5.86961 6.19610 6.68345 7.35146 8.84753 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017126 B = 0.004246 C = 0.003882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.508415 B = 6593.101142 C = 7210.322649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.127 4.127 3 C -0.114 4.114 4 C -0.145 4.145 5 C 0.116 3.884 6 N -0.995 5.995 7 C 0.128 3.872 8 C -0.158 4.158 9 C -0.155 4.155 10 S 2.616 3.384 11 O -0.989 6.989 12 O -0.994 6.994 13 C -0.554 4.554 14 C 0.007 3.993 15 C -0.537 4.537 16 H 0.045 0.955 17 C 0.045 3.955 18 N -0.890 5.890 19 Si 0.930 3.070 20 H -0.267 1.267 21 H -0.270 1.270 22 H -0.278 1.278 23 C -0.196 4.196 24 C -0.131 4.131 25 H 0.056 0.944 26 H 0.063 0.937 27 H 0.051 0.949 28 H 0.046 0.954 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.057 0.943 32 H 0.038 0.962 33 H 0.082 0.918 34 H 0.111 0.889 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.052 0.948 40 H 0.039 0.961 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.116 0.884 44 H 0.131 0.869 45 H 0.266 0.734 46 H 0.079 0.921 47 H 0.098 0.902 48 H 0.086 0.914 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.556 -5.331 12.760 20.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 C -0.152 4.152 4 C -0.184 4.184 5 C -0.008 4.008 6 N -0.833 5.833 7 C 0.023 3.977 8 C -0.216 4.216 9 C -0.214 4.214 10 S 2.715 3.285 11 O -0.979 6.979 12 O -0.984 6.984 13 C -0.686 4.686 14 C 0.005 3.995 15 C -0.575 4.575 16 H 0.063 0.937 17 C -0.159 4.159 18 N -0.526 5.526 19 Si 0.755 3.245 20 H -0.192 1.192 21 H -0.194 1.194 22 H -0.203 1.203 23 C -0.233 4.233 24 C -0.170 4.170 25 H 0.075 0.925 26 H 0.082 0.918 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.085 0.915 30 H 0.102 0.898 31 H 0.076 0.924 32 H 0.057 0.943 33 H 0.100 0.900 34 H 0.129 0.871 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.071 0.929 40 H 0.058 0.942 41 H 0.098 0.902 42 H 0.102 0.898 43 H 0.135 0.865 44 H 0.149 0.851 45 H 0.075 0.925 46 H 0.098 0.902 47 H 0.117 0.883 48 H 0.105 0.895 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.201 -5.941 12.345 19.732 hybrid contribution 1.354 0.324 -0.494 1.477 sum -12.847 -5.617 11.851 18.359 Atomic orbital electron populations 1.21762 0.95013 1.01882 1.02102 1.21541 0.96543 0.96724 1.01680 1.21543 0.93586 0.97324 1.02759 1.22230 0.96709 0.97136 1.02291 1.21507 0.77219 0.97742 1.04324 1.57711 1.14568 1.88806 1.22234 1.21052 0.93814 0.97647 0.85189 1.22163 1.03670 0.97006 0.98805 1.22232 1.03643 0.95064 1.00438 1.04605 0.72623 0.78284 0.72990 1.93447 1.61415 1.78275 1.64761 1.93461 1.45005 1.74567 1.85348 1.29942 1.08626 1.23853 1.06173 1.18404 0.93586 1.00576 0.86900 1.20670 0.90537 1.05648 1.40614 0.93692 1.25492 1.01629 0.95220 0.93527 1.70036 1.28865 1.11373 1.42350 0.86034 0.80230 0.79098 0.79130 1.19223 1.19428 1.20305 1.23216 0.96901 1.03780 0.99372 1.22443 1.01017 0.90401 1.03175 0.92484 0.91810 0.93025 0.93490 0.91480 0.89849 0.92423 0.94286 0.89955 0.87057 0.90765 0.90987 0.89928 0.89919 0.92854 0.94185 0.90185 0.89821 0.86528 0.85055 0.92478 0.90213 0.88334 0.89519 0.91468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.91 71.98 0.71 -1.41 16 2 C -0.13 -2.18 5.93 30.60 0.18 -2.00 16 3 C -0.11 -2.04 5.21 30.59 0.16 -1.88 16 4 C -0.14 -3.28 5.13 30.59 0.16 -3.12 16 5 C 0.12 2.70 4.87 86.38 0.42 3.12 16 6 N -1.00 -29.77 2.66 -493.40 -1.31 -31.08 16 7 C 0.13 3.39 3.15 44.99 0.14 3.53 16 8 C -0.16 -3.02 9.09 71.98 0.65 -2.37 16 9 C -0.16 -3.35 8.07 71.98 0.58 -2.77 16 10 S 2.62 109.37 5.00 -56.49 -0.28 109.09 16 11 O -0.99 -44.16 16.60 -127.65 -2.12 -46.28 16 12 O -0.99 -49.96 16.12 -127.65 -2.06 -52.02 16 13 C -0.55 -23.32 6.05 71.98 0.44 -22.88 16 14 C 0.01 0.37 1.47 -52.93 -0.08 0.29 16 15 C -0.54 -30.60 7.91 25.60 0.20 -30.40 16 16 H 0.04 2.67 7.82 -2.91 -0.02 2.65 16 17 C 0.04 2.50 5.43 84.65 0.46 2.96 16 18 N -0.89 -49.80 12.67 21.45 0.27 -49.53 16 19 Si 0.93 45.07 29.54 68.60 2.03 47.10 16 20 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 21 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 22 H -0.28 -13.88 7.11 99.48 0.71 -13.17 16 23 C -0.20 -8.60 9.95 30.62 0.30 -8.29 16 24 C -0.13 -6.02 9.18 30.62 0.28 -5.74 16 25 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.04 1.15 7.73 -2.39 -0.02 1.13 16 33 H 0.08 1.62 5.42 -2.39 -0.01 1.61 16 34 H 0.11 1.77 6.27 -2.39 -0.01 1.76 16 35 H 0.07 1.76 7.66 -2.39 -0.02 1.75 16 36 H 0.07 2.31 6.94 -2.39 -0.02 2.30 16 37 H 0.08 1.19 6.59 -2.39 -0.02 1.18 16 38 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.04 1.03 8.14 -2.38 -0.02 1.01 16 41 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.08 1.39 6.33 -2.39 -0.02 1.38 16 43 H 0.12 5.14 8.14 -2.39 -0.02 5.12 16 44 H 0.13 4.46 8.11 -2.39 -0.02 4.44 16 45 H 0.27 14.12 8.32 -92.71 -0.77 13.35 16 46 H 0.08 3.54 8.14 -2.39 -0.02 3.53 16 47 H 0.10 3.77 8.14 -2.39 -0.02 3.75 16 48 H 0.09 3.53 8.14 -2.39 -0.02 3.51 16 49 H 0.07 3.34 8.14 -2.38 -0.02 3.32 16 Total: -1.00 -70.41 396.72 2.02 -68.38 By element: Atomic # 1 Polarization: 24.44 SS G_CDS: 0.88 Total: 25.32 kcal Atomic # 6 Polarization: -75.59 SS G_CDS: 4.61 Total: -70.98 kcal Atomic # 7 Polarization: -79.57 SS G_CDS: -1.04 Total: -80.61 kcal Atomic # 8 Polarization: -94.13 SS G_CDS: -4.18 Total: -98.30 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Atomic # 16 Polarization: 109.37 SS G_CDS: -0.28 Total: 109.09 kcal Total: -70.41 2.02 -68.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451087915.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.571 kcal (2) G-P(sol) polarization free energy of solvation -70.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds