Wall clock time and date at job start Tue Mar 31 2020 11:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52991 * 109.47207 * 2 1 4 4 C 1.52996 * 109.47393 * 120.00559 * 2 1 3 5 5 C 1.52998 * 109.47009 * 173.68256 * 4 2 1 6 6 H 1.09002 * 109.87707 * 308.33259 * 5 4 2 7 7 C 1.54322 * 109.88151 * 69.50713 * 5 4 2 8 8 C 1.55155 * 102.94288 * 141.60775 * 7 5 4 9 9 C 1.54903 * 101.58372 * 324.49950 * 8 7 5 10 10 N 1.47027 * 109.88390 * 187.31286 * 5 4 2 11 11 S 1.65599 * 125.64293 * 61.60934 * 10 5 4 12 12 O 1.42103 * 104.27387 * 212.56122 * 11 10 5 13 13 O 1.42103 * 104.27883 * 340.41909 * 11 10 5 14 14 C 1.81399 * 104.44985 * 96.49244 * 11 10 5 15 15 C 1.53000 * 109.47121 * 179.97438 * 14 11 10 16 16 C 1.53001 * 109.47183 * 299.99991 * 15 14 11 17 17 C 1.52995 * 109.47186 * 59.99801 * 15 14 11 18 18 C 1.50694 * 109.47053 * 179.97438 * 15 14 11 19 19 H 1.08002 * 120.00325 * 1.95208 * 18 15 14 20 20 C 1.37884 * 120.00272 * 181.94935 * 18 15 14 21 21 N 1.31511 * 120.00273 * 192.16108 * 20 18 15 22 22 Si 1.86802 * 119.99600 * 12.15968 * 20 18 15 23 23 H 1.48507 * 109.46920 * 88.76376 * 22 20 18 24 24 H 1.48497 * 109.46939 * 208.76081 * 22 20 18 25 25 H 1.48503 * 109.47089 * 328.76366 * 22 20 18 26 26 H 1.09002 * 109.46334 * 299.99867 * 1 2 3 27 27 H 1.08994 * 109.47353 * 59.99141 * 1 2 3 28 28 H 1.08996 * 109.47004 * 180.02562 * 1 2 3 29 29 H 1.09011 * 109.46473 * 240.00333 * 2 1 3 30 30 H 1.09001 * 109.47358 * 309.83596 * 3 2 1 31 31 H 1.09002 * 109.47156 * 69.83518 * 3 2 1 32 32 H 1.09006 * 109.47410 * 189.83571 * 3 2 1 33 33 H 1.09003 * 109.46851 * 53.68430 * 4 2 1 34 34 H 1.08995 * 109.47016 * 293.68352 * 4 2 1 35 35 H 1.08998 * 110.72468 * 259.97321 * 7 5 4 36 36 H 1.09001 * 110.72158 * 23.24493 * 7 5 4 37 37 H 1.09001 * 111.00761 * 206.42255 * 8 7 5 38 38 H 1.09000 * 111.03697 * 82.59127 * 8 7 5 39 39 H 1.09005 * 110.37135 * 278.17082 * 9 8 7 40 40 H 1.09000 * 110.46312 * 155.89575 * 9 8 7 41 41 H 1.09004 * 109.46923 * 299.99568 * 14 11 10 42 42 H 1.08996 * 109.47153 * 59.99517 * 14 11 10 43 43 H 1.09004 * 109.47171 * 71.81786 * 16 15 14 44 44 H 1.09000 * 109.47266 * 191.81848 * 16 15 14 45 45 H 1.09004 * 109.46989 * 311.81491 * 16 15 14 46 46 H 1.09004 * 109.47176 * 59.99987 * 17 15 14 47 47 H 1.09001 * 109.47549 * 179.97438 * 17 15 14 48 48 H 1.09004 * 109.47738 * 300.00112 * 17 15 14 49 49 H 0.96992 * 119.99984 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5618 -0.8602 1.1722 6 1 3.8458 -1.3032 0.2176 7 6 4.2238 0.5249 1.3293 8 6 5.4784 0.2151 2.1880 9 6 4.9481 -0.9012 3.1219 10 7 4.0437 -1.7021 2.2771 11 16 3.6368 -3.2871 2.5309 12 8 3.6473 -3.4295 3.9447 13 8 2.4403 -3.4656 1.7854 14 6 4.9971 -4.2284 1.7863 15 6 4.7351 -5.7259 1.9584 16 6 4.6402 -6.0591 3.4487 17 6 3.4209 -6.0964 1.2683 18 6 5.8648 -6.5079 1.3393 19 1 6.7027 -5.9887 0.8980 20 6 5.8289 -7.8862 1.3363 21 7 6.9057 -8.5714 1.0195 22 14 4.2505 -8.7802 1.7824 23 1 3.4310 -8.9776 0.5597 24 1 4.5805 -10.1010 2.3756 25 1 3.4854 -7.9728 2.7662 26 1 -0.3632 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8898 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8901 30 1 1.5405 2.0044 -0.7891 31 1 1.8272 1.9031 0.9647 32 1 3.1159 1.4475 -0.1756 33 1 1.5874 -1.7112 1.3073 34 1 1.7721 -0.1465 2.1355 35 1 4.5112 0.9275 0.3580 36 1 3.5592 1.2130 1.8518 37 1 5.7859 1.0902 2.7606 38 1 6.2967 -0.1504 1.5676 39 1 4.4007 -0.4675 3.9588 40 1 5.7711 -1.5163 3.4860 41 1 5.0650 -3.9907 0.7247 42 1 5.9333 -3.9647 2.2782 43 1 3.7069 -5.6646 3.8505 44 1 4.6644 -7.1408 3.5814 45 1 5.4817 -5.6095 3.9758 46 1 3.4885 -5.8590 0.2066 47 1 3.2345 -7.1634 1.3905 48 1 2.6035 -5.5309 1.7156 49 1 6.8805 -9.5410 1.0178 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451151986.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:16 Heat of formation + Delta-G solvation = -63.081061 kcal Electronic energy + Delta-G solvation = -27132.951283 eV Core-core repulsion = 23608.740114 eV Total energy + Delta-G solvation = -3524.211169 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.32089 -36.78348 -36.70618 -35.80237 -35.45661 -31.94924 -31.11276 -30.03273 -27.53475 -27.24359 -26.38674 -25.61436 -25.02276 -22.05430 -21.13096 -20.21535 -19.67712 -18.39227 -17.62564 -16.31518 -16.14594 -15.63967 -15.42233 -15.10819 -14.87244 -14.27392 -14.11434 -13.69948 -13.52932 -13.30335 -13.14707 -12.96165 -12.83591 -12.68440 -12.42671 -12.21870 -12.16193 -12.06694 -11.69931 -11.56629 -11.53407 -11.35775 -11.14483 -10.98986 -10.89679 -10.82347 -10.76524 -10.60011 -10.57341 -10.32793 -10.16263 -10.07356 -9.96291 -9.11506 -8.83763 -8.67888 -8.48894 -6.18955 -4.17443 0.67037 2.98230 3.25042 3.34221 3.38278 4.18332 4.31052 4.33758 4.42473 4.60563 4.74214 4.84146 4.94811 4.97833 5.10639 5.25122 5.29968 5.34867 5.39047 5.49246 5.51923 5.57539 5.61003 5.62260 5.67686 5.72561 5.75203 5.89882 5.93047 5.98623 6.02167 6.05170 6.15849 6.21947 6.25801 6.31863 6.38757 6.42107 6.47035 6.50171 6.53197 6.71844 6.86633 7.11966 7.30304 7.61680 8.38871 8.82946 9.44315 10.93639 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.020024 B = 0.004266 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.985536 B = 6561.322559 C = 7073.703413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 C -0.163 4.163 4 C -0.150 4.150 5 C 0.155 3.845 6 H 0.073 0.927 7 C -0.126 4.126 8 C -0.136 4.136 9 C 0.121 3.879 10 N -1.016 6.016 11 S 2.604 3.396 12 O -0.960 6.960 13 O -0.956 6.956 14 C -0.575 4.575 15 C 0.053 3.947 16 C -0.168 4.168 17 C -0.181 4.181 18 C -0.506 4.506 19 H 0.078 0.922 20 C 0.076 3.924 21 N -0.891 5.891 22 Si 0.873 3.127 23 H -0.281 1.281 24 H -0.300 1.300 25 H -0.244 1.244 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.048 0.952 31 H 0.053 0.947 32 H 0.069 0.931 33 H 0.101 0.899 34 H 0.063 0.937 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.124 0.876 42 H 0.123 0.877 43 H 0.036 0.964 44 H 0.066 0.934 45 H 0.056 0.944 46 H 0.063 0.937 47 H 0.052 0.948 48 H 0.049 0.951 49 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.586 20.389 -0.174 21.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 C -0.219 4.219 4 C -0.189 4.189 5 C 0.049 3.951 6 H 0.091 0.909 7 C -0.165 4.165 8 C -0.175 4.175 9 C -0.005 4.005 10 N -0.852 5.852 11 S 2.704 3.296 12 O -0.950 6.950 13 O -0.947 6.947 14 C -0.708 4.708 15 C 0.051 3.949 16 C -0.226 4.226 17 C -0.237 4.237 18 C -0.545 4.545 19 H 0.096 0.904 20 C -0.127 4.127 21 N -0.528 5.528 22 Si 0.705 3.295 23 H -0.209 1.209 24 H -0.228 1.228 25 H -0.170 1.170 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.119 0.881 34 H 0.081 0.919 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.085 0.915 40 H 0.092 0.908 41 H 0.142 0.858 42 H 0.142 0.858 43 H 0.055 0.945 44 H 0.085 0.915 45 H 0.076 0.924 46 H 0.082 0.918 47 H 0.070 0.930 48 H 0.068 0.932 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.311 19.853 0.285 21.158 hybrid contribution -0.086 -0.691 -0.242 0.737 sum -7.397 19.162 0.043 20.540 Atomic orbital electron populations 1.21828 0.95300 1.02028 1.01256 1.21020 0.95761 0.95985 0.98339 1.22347 1.02124 0.96120 1.01353 1.22486 0.94936 1.03694 0.97805 1.21303 0.93768 0.90718 0.89307 0.90871 1.23073 0.96702 0.96250 1.00457 1.22862 0.97971 0.98373 0.98290 1.21922 0.92355 0.92952 0.93227 1.58912 1.61066 1.27625 1.37575 1.05371 0.77177 0.71906 0.75155 1.93553 1.87497 1.84683 1.29297 1.93484 1.43221 1.84196 1.73805 1.30424 1.17388 1.10325 1.12667 1.18241 0.95620 0.87527 0.93550 1.22660 0.99988 1.03002 0.96906 1.22831 0.97442 1.01376 1.02099 1.20664 1.04216 0.90763 1.38847 0.90432 1.24973 0.95991 0.97423 0.94280 1.69914 1.27341 1.07187 1.48315 0.87450 0.84402 0.78053 0.79640 1.20866 1.22817 1.16957 0.92954 0.92947 0.92357 0.91030 0.93303 0.92800 0.91208 0.88053 0.91867 0.89857 0.90175 0.90232 0.90518 0.91518 0.90812 0.85763 0.85840 0.94516 0.91515 0.92447 0.91817 0.92961 0.93194 0.92428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.18 37.16 0.34 -1.06 16 2 C -0.09 -0.91 2.90 -90.62 -0.26 -1.17 16 3 C -0.16 -1.27 7.73 37.15 0.29 -0.98 16 4 C -0.15 -1.81 4.39 -26.73 -0.12 -1.93 16 5 C 0.16 1.80 3.01 -66.95 -0.20 1.60 16 6 H 0.07 0.83 8.12 -51.93 -0.42 0.41 16 7 C -0.13 -1.06 4.44 -24.90 -0.11 -1.17 16 8 C -0.14 -1.14 7.08 -24.59 -0.17 -1.31 16 9 C 0.12 1.36 6.97 -2.53 -0.02 1.34 16 10 N -1.02 -13.88 3.32 -104.42 -0.35 -14.23 16 11 S 2.60 46.04 4.65 -107.50 -0.50 45.54 16 12 O -0.96 -19.24 15.59 -57.54 -0.90 -20.14 16 13 O -0.96 -18.26 12.58 -57.54 -0.72 -18.99 16 14 C -0.58 -10.79 5.09 37.16 0.19 -10.60 16 15 C 0.05 1.24 0.52 -155.67 -0.08 1.16 16 16 C -0.17 -3.83 6.83 37.16 0.25 -3.58 16 17 C -0.18 -4.08 7.18 37.16 0.27 -3.82 16 18 C -0.51 -13.71 8.62 -34.44 -0.30 -14.01 16 19 H 0.08 2.23 7.99 -52.49 -0.42 1.81 16 20 C 0.08 2.15 5.33 -17.82 -0.10 2.06 16 21 N -0.89 -26.63 13.96 55.43 0.77 -25.86 16 22 Si 0.87 21.62 22.80 -169.99 -3.88 17.75 16 23 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 25 H -0.24 -5.66 4.54 56.52 0.26 -5.41 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.72 8.12 -51.92 -0.42 0.29 16 30 H 0.05 0.35 8.12 -51.93 -0.42 -0.07 16 31 H 0.05 0.41 7.49 -51.93 -0.39 0.02 16 32 H 0.07 0.48 4.66 -51.93 -0.24 0.24 16 33 H 0.10 1.51 5.40 -51.93 -0.28 1.23 16 34 H 0.06 0.73 7.91 -51.93 -0.41 0.32 16 35 H 0.08 0.57 6.43 -51.93 -0.33 0.24 16 36 H 0.08 0.62 6.35 -51.93 -0.33 0.29 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.12 2.13 8.14 -51.92 -0.42 1.71 16 42 H 0.12 2.13 8.14 -51.93 -0.42 1.71 16 43 H 0.04 0.79 6.32 -51.93 -0.33 0.46 16 44 H 0.07 1.56 4.38 -51.93 -0.23 1.33 16 45 H 0.06 1.23 8.09 -51.93 -0.42 0.81 16 46 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 47 H 0.05 1.22 2.24 -51.93 -0.12 1.10 16 48 H 0.05 1.05 5.47 -51.93 -0.28 0.77 16 49 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 357.76 15.07 5.39 5.39 Total: -1.00 -32.22 357.76 -8.75 -40.98 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -8.55 Total: 3.04 kcal Atomic # 6 Polarization: -33.46 SS G_CDS: -0.02 Total: -33.48 kcal Atomic # 7 Polarization: -40.51 SS G_CDS: 0.43 Total: -40.09 kcal Atomic # 8 Polarization: -37.51 SS G_CDS: -1.62 Total: -39.13 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -3.88 Total: 17.75 kcal Atomic # 16 Polarization: 46.04 SS G_CDS: -0.50 Total: 45.54 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.22 -8.75 -40.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451151986.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.105 kcal (2) G-P(sol) polarization free energy of solvation -32.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds