Wall clock time and date at job start Tue Mar 31 2020 11:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52991 * 109.47207 * 2 1 4 4 C 1.52996 * 109.47393 * 120.00559 * 2 1 3 5 5 C 1.52998 * 109.47009 * 173.68256 * 4 2 1 6 6 H 1.09002 * 109.87707 * 308.33259 * 5 4 2 7 7 C 1.54322 * 109.88151 * 69.50713 * 5 4 2 8 8 C 1.55155 * 102.94288 * 141.60775 * 7 5 4 9 9 C 1.54903 * 101.58372 * 324.49950 * 8 7 5 10 10 N 1.47027 * 109.88390 * 187.31286 * 5 4 2 11 11 S 1.65599 * 125.64293 * 61.60934 * 10 5 4 12 12 O 1.42103 * 104.27387 * 212.56122 * 11 10 5 13 13 O 1.42103 * 104.27883 * 340.41909 * 11 10 5 14 14 C 1.81399 * 104.44985 * 96.49244 * 11 10 5 15 15 C 1.53000 * 109.47121 * 179.97438 * 14 11 10 16 16 C 1.53001 * 109.47183 * 299.99991 * 15 14 11 17 17 C 1.52995 * 109.47186 * 59.99801 * 15 14 11 18 18 C 1.50694 * 109.47053 * 179.97438 * 15 14 11 19 19 H 1.08002 * 120.00325 * 1.95208 * 18 15 14 20 20 C 1.37884 * 120.00272 * 181.94935 * 18 15 14 21 21 N 1.31511 * 120.00273 * 192.16108 * 20 18 15 22 22 Si 1.86802 * 119.99600 * 12.15968 * 20 18 15 23 23 H 1.48507 * 109.46920 * 88.76376 * 22 20 18 24 24 H 1.48497 * 109.46939 * 208.76081 * 22 20 18 25 25 H 1.48503 * 109.47089 * 328.76366 * 22 20 18 26 26 H 1.09002 * 109.46334 * 299.99867 * 1 2 3 27 27 H 1.08994 * 109.47353 * 59.99141 * 1 2 3 28 28 H 1.08996 * 109.47004 * 180.02562 * 1 2 3 29 29 H 1.09011 * 109.46473 * 240.00333 * 2 1 3 30 30 H 1.09001 * 109.47358 * 309.83596 * 3 2 1 31 31 H 1.09002 * 109.47156 * 69.83518 * 3 2 1 32 32 H 1.09006 * 109.47410 * 189.83571 * 3 2 1 33 33 H 1.09003 * 109.46851 * 53.68430 * 4 2 1 34 34 H 1.08995 * 109.47016 * 293.68352 * 4 2 1 35 35 H 1.08998 * 110.72468 * 259.97321 * 7 5 4 36 36 H 1.09001 * 110.72158 * 23.24493 * 7 5 4 37 37 H 1.09001 * 111.00761 * 206.42255 * 8 7 5 38 38 H 1.09000 * 111.03697 * 82.59127 * 8 7 5 39 39 H 1.09005 * 110.37135 * 278.17082 * 9 8 7 40 40 H 1.09000 * 110.46312 * 155.89575 * 9 8 7 41 41 H 1.09004 * 109.46923 * 299.99568 * 14 11 10 42 42 H 1.08996 * 109.47153 * 59.99517 * 14 11 10 43 43 H 1.09004 * 109.47171 * 71.81786 * 16 15 14 44 44 H 1.09000 * 109.47266 * 191.81848 * 16 15 14 45 45 H 1.09004 * 109.46989 * 311.81491 * 16 15 14 46 46 H 1.09004 * 109.47176 * 59.99987 * 17 15 14 47 47 H 1.09001 * 109.47549 * 179.97438 * 17 15 14 48 48 H 1.09004 * 109.47738 * 300.00112 * 17 15 14 49 49 H 0.96992 * 119.99984 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5618 -0.8602 1.1722 6 1 3.8458 -1.3032 0.2176 7 6 4.2238 0.5249 1.3293 8 6 5.4784 0.2151 2.1880 9 6 4.9481 -0.9012 3.1219 10 7 4.0437 -1.7021 2.2771 11 16 3.6368 -3.2871 2.5309 12 8 3.6473 -3.4295 3.9447 13 8 2.4403 -3.4656 1.7854 14 6 4.9971 -4.2284 1.7863 15 6 4.7351 -5.7259 1.9584 16 6 4.6402 -6.0591 3.4487 17 6 3.4209 -6.0964 1.2683 18 6 5.8648 -6.5079 1.3393 19 1 6.7027 -5.9887 0.8980 20 6 5.8289 -7.8862 1.3363 21 7 6.9057 -8.5714 1.0195 22 14 4.2505 -8.7802 1.7824 23 1 3.4310 -8.9776 0.5597 24 1 4.5805 -10.1010 2.3756 25 1 3.4854 -7.9728 2.7662 26 1 -0.3632 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8898 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8901 30 1 1.5405 2.0044 -0.7891 31 1 1.8272 1.9031 0.9647 32 1 3.1159 1.4475 -0.1756 33 1 1.5874 -1.7112 1.3073 34 1 1.7721 -0.1465 2.1355 35 1 4.5112 0.9275 0.3580 36 1 3.5592 1.2130 1.8518 37 1 5.7859 1.0902 2.7606 38 1 6.2967 -0.1504 1.5676 39 1 4.4007 -0.4675 3.9588 40 1 5.7711 -1.5163 3.4860 41 1 5.0650 -3.9907 0.7247 42 1 5.9333 -3.9647 2.2782 43 1 3.7069 -5.6646 3.8505 44 1 4.6644 -7.1408 3.5814 45 1 5.4817 -5.6095 3.9758 46 1 3.4885 -5.8590 0.2066 47 1 3.2345 -7.1634 1.3905 48 1 2.6035 -5.5309 1.7156 49 1 6.8805 -9.5410 1.0178 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451151986.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:15 Heat of formation + Delta-G solvation = -84.244680 kcal Electronic energy + Delta-G solvation = -27133.869007 eV Core-core repulsion = 23608.740114 eV Total energy + Delta-G solvation = -3525.128892 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.17413 -38.54705 -38.20136 -36.96279 -36.60806 -34.07187 -31.98053 -30.86757 -29.04571 -28.20011 -28.00440 -27.12559 -26.44323 -22.99410 -21.93513 -21.50774 -20.96164 -19.68101 -18.88505 -18.17775 -17.47202 -17.21572 -16.90590 -16.28872 -15.90339 -15.26856 -15.22324 -15.02045 -14.86834 -14.81008 -14.51519 -14.28155 -14.17121 -13.99675 -13.69545 -13.44280 -13.24402 -13.09222 -12.96406 -12.85501 -12.76511 -12.70697 -12.60670 -12.55746 -12.19606 -12.05836 -11.91187 -11.82924 -11.64635 -11.56299 -11.36059 -11.27793 -11.15415 -10.93999 -10.71600 -10.52019 -9.85765 -8.36942 -6.37886 -0.72682 1.27593 1.33029 1.40439 1.73934 2.26951 2.80531 2.97432 3.10478 3.55653 3.74517 3.80629 3.84373 4.01244 4.11841 4.19386 4.21490 4.24660 4.45272 4.46538 4.52729 4.55874 4.63190 4.64827 4.70877 4.75768 4.82629 4.85967 4.89454 4.92389 5.00898 5.02857 5.07108 5.11567 5.15451 5.18014 5.28043 5.32670 5.33292 5.44227 5.48543 5.52339 5.56635 5.58908 5.59561 5.64648 6.23408 6.64994 7.26960 8.79023 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.020024 B = 0.004266 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.985536 B = 6561.322559 C = 7073.703413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.092 4.092 3 C -0.158 4.158 4 C -0.151 4.151 5 C 0.143 3.857 6 H 0.074 0.926 7 C -0.119 4.119 8 C -0.127 4.127 9 C 0.105 3.895 10 N -1.013 6.013 11 S 2.625 3.375 12 O -0.985 6.985 13 O -0.972 6.972 14 C -0.584 4.584 15 C 0.044 3.956 16 C -0.172 4.172 17 C -0.185 4.185 18 C -0.503 4.503 19 H 0.048 0.952 20 C 0.026 3.974 21 N -0.937 5.937 22 Si 0.916 3.084 23 H -0.276 1.276 24 H -0.303 1.303 25 H -0.220 1.220 26 H 0.055 0.945 27 H 0.065 0.935 28 H 0.040 0.960 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.106 0.894 36 H 0.091 0.909 37 H 0.105 0.895 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.135 0.865 42 H 0.133 0.867 43 H 0.048 0.952 44 H 0.057 0.943 45 H 0.063 0.937 46 H 0.069 0.931 47 H 0.045 0.955 48 H 0.064 0.936 49 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.410 23.233 -0.114 24.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.111 4.111 3 C -0.215 4.215 4 C -0.190 4.190 5 C 0.038 3.962 6 H 0.092 0.908 7 C -0.157 4.157 8 C -0.166 4.166 9 C -0.020 4.020 10 N -0.851 5.851 11 S 2.724 3.276 12 O -0.975 6.975 13 O -0.963 6.963 14 C -0.715 4.715 15 C 0.041 3.959 16 C -0.229 4.229 17 C -0.242 4.242 18 C -0.542 4.542 19 H 0.066 0.934 20 C -0.173 4.173 21 N -0.576 5.576 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.231 1.231 25 H -0.144 1.144 26 H 0.074 0.926 27 H 0.084 0.916 28 H 0.060 0.940 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.100 0.900 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.124 0.876 36 H 0.109 0.891 37 H 0.124 0.876 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.154 0.846 42 H 0.151 0.849 43 H 0.067 0.933 44 H 0.076 0.924 45 H 0.082 0.918 46 H 0.088 0.912 47 H 0.063 0.937 48 H 0.082 0.918 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.140 22.696 0.347 24.114 hybrid contribution 0.211 -1.457 -0.281 1.499 sum -7.929 21.239 0.065 22.671 Atomic orbital electron populations 1.21846 0.95373 1.01211 1.02124 1.21022 0.95770 0.97306 0.96974 1.22315 1.02901 0.94307 1.01987 1.22452 0.95275 1.02176 0.99092 1.21616 0.93718 0.92323 0.88549 0.90784 1.23113 0.96516 0.94182 1.01921 1.22880 0.97838 0.98074 0.97825 1.22271 0.92131 0.93691 0.93884 1.58611 1.61569 1.26206 1.38728 1.04461 0.76295 0.72691 0.74196 1.93517 1.87652 1.85667 1.30656 1.93471 1.43780 1.85069 1.73972 1.30450 1.19108 1.07977 1.14014 1.18222 0.94385 0.89863 0.93389 1.22665 1.00987 1.02505 0.96790 1.22849 0.97561 1.01099 1.02665 1.20920 1.04501 0.90993 1.37743 0.93364 1.25677 0.98509 0.98428 0.94648 1.70031 1.29396 1.07490 1.50664 0.86719 0.81490 0.77019 0.80244 1.20275 1.23121 1.14449 0.92609 0.91559 0.94045 0.91411 0.92487 0.92322 0.89988 0.91334 0.91672 0.87577 0.89060 0.87639 0.90149 0.91054 0.90770 0.84645 0.84857 0.93318 0.92428 0.91788 0.91240 0.93651 0.91776 0.92419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 9.18 71.98 0.66 -1.98 16 2 C -0.09 -1.63 2.90 -10.80 -0.03 -1.66 16 3 C -0.16 -1.94 7.73 71.98 0.56 -1.38 16 4 C -0.15 -3.43 4.39 30.59 0.13 -3.29 16 5 C 0.14 3.00 3.01 45.34 0.14 3.14 16 6 H 0.07 1.53 8.12 -2.39 -0.02 1.51 16 7 C -0.12 -1.55 4.44 31.78 0.14 -1.40 16 8 C -0.13 -1.65 7.08 31.98 0.23 -1.43 16 9 C 0.10 2.11 6.97 86.85 0.61 2.71 16 10 N -1.01 -25.96 3.32 -484.28 -1.61 -27.56 16 11 S 2.62 90.16 4.65 -56.49 -0.26 89.90 16 12 O -0.98 -38.48 15.59 -127.65 -1.99 -40.47 16 13 O -0.97 -36.49 12.58 -127.65 -1.61 -38.09 16 14 C -0.58 -21.53 5.09 71.98 0.37 -21.17 16 15 C 0.04 2.01 0.52 -52.93 -0.03 1.98 16 16 C -0.17 -7.69 6.83 71.98 0.49 -7.20 16 17 C -0.19 -8.17 7.18 71.98 0.52 -7.65 16 18 C -0.50 -27.62 8.62 25.60 0.22 -27.40 16 19 H 0.05 2.86 7.99 -2.91 -0.02 2.84 16 20 C 0.03 1.49 5.33 84.66 0.45 1.94 16 21 N -0.94 -57.43 13.96 21.45 0.30 -57.13 16 22 Si 0.92 44.42 22.80 68.60 1.56 45.98 16 23 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 24 H -0.30 -14.70 7.11 99.48 0.71 -13.99 16 25 H -0.22 -9.78 4.54 99.48 0.45 -9.33 16 26 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.07 1.25 8.12 -2.38 -0.02 1.23 16 30 H 0.06 0.63 8.12 -2.39 -0.02 0.61 16 31 H 0.06 0.68 7.49 -2.39 -0.02 0.66 16 32 H 0.08 0.79 4.66 -2.38 -0.01 0.78 16 33 H 0.07 2.03 5.40 -2.39 -0.01 2.02 16 34 H 0.06 1.41 7.91 -2.39 -0.02 1.39 16 35 H 0.11 0.95 6.43 -2.39 -0.02 0.94 16 36 H 0.09 1.03 6.35 -2.39 -0.02 1.01 16 37 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 40 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.14 4.58 8.14 -2.39 -0.02 4.56 16 42 H 0.13 4.54 8.14 -2.39 -0.02 4.52 16 43 H 0.05 2.04 6.32 -2.38 -0.02 2.02 16 44 H 0.06 2.64 4.38 -2.39 -0.01 2.63 16 45 H 0.06 2.71 8.09 -2.38 -0.02 2.69 16 46 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 47 H 0.05 2.05 2.24 -2.39 -0.01 2.04 16 48 H 0.06 2.63 5.47 -2.38 -0.01 2.62 16 49 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -70.33 357.76 1.51 -68.82 By element: Atomic # 1 Polarization: 22.69 SS G_CDS: 0.66 Total: 23.36 kcal Atomic # 6 Polarization: -69.24 SS G_CDS: 4.45 Total: -64.79 kcal Atomic # 7 Polarization: -83.39 SS G_CDS: -1.31 Total: -84.70 kcal Atomic # 8 Polarization: -74.97 SS G_CDS: -3.60 Total: -78.57 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.56 Total: 45.98 kcal Atomic # 16 Polarization: 90.16 SS G_CDS: -0.26 Total: 89.90 kcal Total: -70.33 1.51 -68.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451151986.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.427 kcal (2) G-P(sol) polarization free energy of solvation -70.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds