Wall clock time and date at job start Tue Mar 31 2020 11:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47199 * 2 1 4 4 C 1.53004 * 109.47207 * 239.99453 * 2 1 3 5 5 C 1.53003 * 109.47099 * 183.65696 * 4 2 1 6 6 H 1.09001 * 109.87327 * 311.10083 * 5 4 2 7 7 C 1.54318 * 109.88246 * 190.07943 * 5 4 2 8 8 C 1.55161 * 102.94309 * 218.38722 * 7 5 4 9 9 C 1.54909 * 101.57559 * 35.50618 * 8 7 5 10 10 N 1.47024 * 109.88036 * 72.27265 * 5 4 2 11 11 S 1.65600 * 125.64833 * 298.33676 * 10 5 4 12 12 O 1.42107 * 104.27794 * 205.86491 * 11 10 5 13 13 O 1.42105 * 104.27797 * 333.71722 * 11 10 5 14 14 C 1.81401 * 104.44912 * 89.79285 * 11 10 5 15 15 C 1.52999 * 109.46737 * 177.56206 * 14 11 10 16 16 C 1.52999 * 109.47135 * 299.99246 * 15 14 11 17 17 C 1.52994 * 109.47718 * 60.00054 * 15 14 11 18 18 C 1.50700 * 109.46833 * 179.97438 * 15 14 11 19 19 H 1.08003 * 120.00053 * 3.91009 * 18 15 14 20 20 C 1.37875 * 120.00265 * 183.90971 * 18 15 14 21 21 N 1.31518 * 120.00267 * 187.73963 * 20 18 15 22 22 Si 1.86805 * 119.99949 * 7.74337 * 20 18 15 23 23 H 1.48498 * 109.47077 * 93.32514 * 22 20 18 24 24 H 1.48500 * 109.47015 * 213.32930 * 22 20 18 25 25 H 1.48503 * 109.46959 * 333.32797 * 22 20 18 26 26 H 1.08997 * 109.46435 * 60.00240 * 1 2 3 27 27 H 1.09005 * 109.47053 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47188 * 300.00163 * 1 2 3 29 29 H 1.09008 * 109.46939 * 119.99750 * 2 1 3 30 30 H 1.09009 * 109.46797 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.46936 * 299.99733 * 3 2 1 32 32 H 1.08992 * 109.47184 * 59.99834 * 3 2 1 33 33 H 1.08996 * 109.47239 * 303.66113 * 4 2 1 34 34 H 1.09001 * 109.46993 * 63.66139 * 4 2 1 35 35 H 1.08994 * 110.71971 * 336.75644 * 7 5 4 36 36 H 1.09004 * 110.71960 * 99.85038 * 7 5 4 37 37 H 1.09002 * 111.00160 * 153.57531 * 8 7 5 38 38 H 1.08996 * 111.00612 * 277.39363 * 8 7 5 39 39 H 1.08997 * 110.36624 * 81.83174 * 9 8 7 40 40 H 1.09006 * 110.36198 * 204.03958 * 9 8 7 41 41 H 1.08997 * 109.46808 * 297.55711 * 14 11 10 42 42 H 1.08991 * 109.47311 * 57.55839 * 14 11 10 43 43 H 1.09009 * 109.46956 * 71.41049 * 16 15 14 44 44 H 1.09000 * 109.47339 * 191.40520 * 16 15 14 45 45 H 1.08993 * 109.47718 * 311.41118 * 16 15 14 46 46 H 1.08997 * 109.47430 * 59.99514 * 17 15 14 47 47 H 1.09000 * 109.47577 * 180.02562 * 17 15 14 48 48 H 1.09002 * 109.47002 * 299.99640 * 17 15 14 49 49 H 0.97001 * 119.99601 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 -1.2492 5 6 3.5673 -0.8015 -1.2040 6 1 3.9832 0.1794 -0.9737 7 6 4.1074 -1.2949 -2.5628 8 6 5.2817 -2.2229 -2.1538 9 6 4.7356 -2.8595 -0.8514 10 7 3.9869 -1.7771 -0.1873 11 16 3.6712 -1.6765 1.4352 12 8 4.7208 -2.4169 2.0431 13 8 3.5214 -0.2842 1.6774 14 6 2.0855 -2.5329 1.6418 15 6 1.7104 -2.5607 3.1249 16 6 2.7951 -3.2993 3.9115 17 6 1.5880 -1.1279 3.6471 18 6 0.3928 -3.2716 3.2965 19 1 -0.0944 -3.7195 2.4429 20 6 -0.1909 -3.3504 4.5431 21 7 -1.2584 -4.0971 4.7234 22 14 0.5347 -2.3966 5.9761 23 1 -0.1468 -1.0823 6.0916 24 1 0.3418 -3.1663 7.2313 25 1 1.9859 -2.1830 5.7444 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.1301 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6242 -1.7283 -1.2825 34 1 1.7313 -0.1711 -2.1380 35 1 3.3429 -1.8547 -3.1014 36 1 4.4648 -0.4578 -3.1626 37 1 5.4622 -2.9828 -2.9142 38 1 6.1857 -1.6462 -1.9583 39 1 4.0719 -3.6919 -1.0853 40 1 5.5580 -3.1968 -0.2203 41 1 1.3127 -2.0067 1.0815 42 1 2.1727 -3.5537 1.2699 43 1 3.6939 -2.6840 3.9566 44 1 2.4395 -3.4975 4.9226 45 1 3.0250 -4.2424 3.4158 46 1 0.8152 -0.6017 3.0867 47 1 1.3212 -1.1477 4.7037 48 1 2.5408 -0.6132 3.5229 49 1 -1.6688 -4.1527 5.6006 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451151987.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:20 Heat of formation + Delta-G solvation = -52.048318 kcal Electronic energy + Delta-G solvation = -28281.180342 eV Core-core repulsion = 24757.447589 eV Total energy + Delta-G solvation = -3523.732753 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.23747 -37.25907 -36.73437 -35.46034 -35.27279 -31.92778 -30.96170 -30.11753 -27.59927 -26.81148 -26.38319 -25.49388 -25.00948 -22.23713 -21.18102 -19.98986 -19.56712 -18.33443 -17.56219 -16.62897 -16.17768 -15.67002 -15.37118 -15.07795 -14.72021 -14.14519 -13.82820 -13.68282 -13.29163 -13.21121 -13.12333 -12.90904 -12.74982 -12.53564 -12.41332 -12.16805 -11.95091 -11.77773 -11.62069 -11.50142 -11.41439 -11.28077 -11.21314 -11.07044 -11.04321 -10.90512 -10.74181 -10.42238 -10.32341 -10.20289 -10.08798 -10.03603 -9.72709 -9.04709 -8.80234 -8.65292 -8.51667 -6.16755 -4.16535 0.67537 2.99532 3.25063 3.34162 3.38510 4.21785 4.28454 4.34384 4.38792 4.70924 4.75904 5.00035 5.06967 5.12665 5.13513 5.32603 5.36468 5.43490 5.47309 5.53519 5.63139 5.63858 5.72603 5.79166 5.82671 5.89961 5.94500 5.99336 6.02927 6.07447 6.16048 6.19869 6.25675 6.30052 6.34744 6.40762 6.48104 6.49700 6.52334 6.63861 6.71498 6.72446 6.89324 7.11997 7.31234 7.61960 8.40534 8.84344 9.45713 10.95838 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017896 B = 0.005704 C = 0.005111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.189845 B = 4907.822954 C = 5477.173011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.127 4.127 3 C -0.131 4.131 4 C -0.141 4.141 5 C 0.148 3.852 6 H 0.084 0.916 7 C -0.125 4.125 8 C -0.129 4.129 9 C 0.113 3.887 10 N -1.013 6.013 11 S 2.602 3.398 12 O -0.964 6.964 13 O -0.949 6.949 14 C -0.589 4.589 15 C 0.056 3.944 16 C -0.171 4.171 17 C -0.179 4.179 18 C -0.501 4.501 19 H 0.078 0.922 20 C 0.075 3.925 21 N -0.894 5.894 22 Si 0.870 3.130 23 H -0.283 1.283 24 H -0.299 1.299 25 H -0.240 1.240 26 H 0.050 0.950 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.082 0.918 30 H 0.062 0.938 31 H 0.041 0.959 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.082 0.918 41 H 0.137 0.863 42 H 0.123 0.877 43 H 0.038 0.962 44 H 0.066 0.934 45 H 0.056 0.944 46 H 0.064 0.936 47 H 0.053 0.947 48 H 0.045 0.955 49 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.527 6.318 -15.170 18.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.145 4.145 3 C -0.188 4.188 4 C -0.180 4.180 5 C 0.042 3.958 6 H 0.102 0.898 7 C -0.164 4.164 8 C -0.168 4.168 9 C -0.012 4.012 10 N -0.850 5.850 11 S 2.702 3.298 12 O -0.955 6.955 13 O -0.940 6.940 14 C -0.721 4.721 15 C 0.053 3.947 16 C -0.228 4.228 17 C -0.236 4.236 18 C -0.540 4.540 19 H 0.096 0.904 20 C -0.127 4.127 21 N -0.531 5.531 22 Si 0.701 3.299 23 H -0.210 1.210 24 H -0.228 1.228 25 H -0.166 1.166 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.099 0.901 30 H 0.081 0.919 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.100 0.900 41 H 0.155 0.845 42 H 0.141 0.859 43 H 0.057 0.943 44 H 0.085 0.915 45 H 0.075 0.925 46 H 0.083 0.917 47 H 0.071 0.929 48 H 0.064 0.936 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.967 6.687 -14.336 18.697 hybrid contribution -0.496 0.046 0.609 0.787 sum 9.471 6.733 -13.726 17.984 Atomic orbital electron populations 1.21858 0.94892 1.02217 1.01644 1.21805 0.96312 0.98098 0.98248 1.21692 1.01567 0.95019 1.00542 1.22312 0.94742 1.01620 0.99289 1.21462 0.94216 0.92589 0.87528 0.89841 1.22695 0.98001 0.99717 0.95970 1.22742 0.98202 0.99122 0.96694 1.22001 0.95549 0.89602 0.94063 1.58889 1.68815 1.32679 1.24635 1.05450 0.77652 0.75628 0.71022 1.93523 1.53850 1.74349 1.73738 1.93556 1.87104 1.30507 1.82801 1.30739 1.19508 1.13539 1.08333 1.18217 0.97519 0.93291 0.85672 1.22711 0.97174 1.00728 1.02203 1.22810 1.01215 0.97899 1.01632 1.20664 1.02418 1.35104 0.95806 0.90387 1.24973 0.94699 0.94606 0.98439 1.69894 1.21533 1.37994 1.23658 0.87506 0.81198 0.79594 0.81566 1.20994 1.22779 1.16587 0.93095 0.92261 0.92191 0.90065 0.91919 0.93958 0.92693 0.90957 0.90306 0.90495 0.90418 0.90157 0.90755 0.91683 0.90006 0.84536 0.85858 0.94310 0.91531 0.92528 0.91654 0.92914 0.93586 0.92489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 8.86 37.16 0.33 -1.73 16 2 C -0.13 -1.79 1.46 -90.62 -0.13 -1.93 16 3 C -0.13 -1.77 8.10 37.16 0.30 -1.46 16 4 C -0.14 -1.63 4.05 -26.73 -0.11 -1.74 16 5 C 0.15 1.72 2.83 -66.95 -0.19 1.53 16 6 H 0.08 1.01 6.10 -51.93 -0.32 0.69 16 7 C -0.12 -1.05 6.46 -24.90 -0.16 -1.22 16 8 C -0.13 -1.10 7.09 -24.58 -0.17 -1.27 16 9 C 0.11 1.29 7.07 -2.53 -0.02 1.28 16 10 N -1.01 -14.08 3.32 -104.42 -0.35 -14.42 16 11 S 2.60 46.71 3.86 -107.50 -0.41 46.29 16 12 O -0.96 -19.66 14.96 -57.54 -0.86 -20.52 16 13 O -0.95 -17.95 11.18 -57.54 -0.64 -18.60 16 14 C -0.59 -11.17 4.46 37.16 0.17 -11.00 16 15 C 0.06 1.28 0.52 -155.66 -0.08 1.20 16 16 C -0.17 -3.89 6.80 37.16 0.25 -3.64 16 17 C -0.18 -4.01 6.98 37.15 0.26 -3.75 16 18 C -0.50 -13.44 8.62 -34.44 -0.30 -13.73 16 19 H 0.08 2.23 7.99 -52.48 -0.42 1.81 16 20 C 0.08 2.12 5.39 -17.82 -0.10 2.02 16 21 N -0.89 -26.65 13.96 55.43 0.77 -25.88 16 22 Si 0.87 21.52 22.78 -169.99 -3.87 17.65 16 23 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16 25 H -0.24 -5.57 4.38 56.52 0.25 -5.32 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.85 7.74 -51.93 -0.40 0.45 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.08 1.34 1.60 -35.89 -0.06 1.29 16 30 H 0.06 0.87 5.63 -51.92 -0.29 0.57 16 31 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.08 0.75 8.12 -51.93 -0.42 0.33 16 35 H 0.08 0.58 7.85 -51.93 -0.41 0.17 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.08 0.98 7.67 -51.93 -0.40 0.58 16 41 H 0.14 2.43 4.72 -51.93 -0.25 2.18 16 42 H 0.12 2.17 8.14 -51.93 -0.42 1.75 16 43 H 0.04 0.84 6.18 -51.92 -0.32 0.52 16 44 H 0.07 1.55 4.29 -51.93 -0.22 1.33 16 45 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 46 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 47 H 0.05 1.22 2.26 -51.93 -0.12 1.11 16 48 H 0.05 0.96 5.58 -51.93 -0.29 0.67 16 49 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 349.04 15.07 5.26 5.26 Total: -1.00 -31.83 349.04 -8.32 -40.15 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -8.27 Total: 5.52 kcal Atomic # 6 Polarization: -35.50 SS G_CDS: 0.05 Total: -35.45 kcal Atomic # 7 Polarization: -40.73 SS G_CDS: 0.43 Total: -40.30 kcal Atomic # 8 Polarization: -37.62 SS G_CDS: -1.50 Total: -39.12 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -3.87 Total: 17.65 kcal Atomic # 16 Polarization: 46.71 SS G_CDS: -0.41 Total: 46.29 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.83 -8.32 -40.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451151987.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.896 kcal (2) G-P(sol) polarization free energy of solvation -31.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds