Wall clock time and date at job start Tue Mar 31 2020 11:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47199 * 2 1 4 4 C 1.53004 * 109.47207 * 239.99453 * 2 1 3 5 5 C 1.53003 * 109.47099 * 183.65696 * 4 2 1 6 6 H 1.09001 * 109.87327 * 311.10083 * 5 4 2 7 7 C 1.54318 * 109.88246 * 190.07943 * 5 4 2 8 8 C 1.55161 * 102.94309 * 218.38722 * 7 5 4 9 9 C 1.54909 * 101.57559 * 35.50618 * 8 7 5 10 10 N 1.47024 * 109.88036 * 72.27265 * 5 4 2 11 11 S 1.65600 * 125.64833 * 298.33676 * 10 5 4 12 12 O 1.42107 * 104.27794 * 205.86491 * 11 10 5 13 13 O 1.42105 * 104.27797 * 333.71722 * 11 10 5 14 14 C 1.81401 * 104.44912 * 89.79285 * 11 10 5 15 15 C 1.52999 * 109.46737 * 177.56206 * 14 11 10 16 16 C 1.52999 * 109.47135 * 299.99246 * 15 14 11 17 17 C 1.52994 * 109.47718 * 60.00054 * 15 14 11 18 18 C 1.50700 * 109.46833 * 179.97438 * 15 14 11 19 19 H 1.08003 * 120.00053 * 3.91009 * 18 15 14 20 20 C 1.37875 * 120.00265 * 183.90971 * 18 15 14 21 21 N 1.31518 * 120.00267 * 187.73963 * 20 18 15 22 22 Si 1.86805 * 119.99949 * 7.74337 * 20 18 15 23 23 H 1.48498 * 109.47077 * 93.32514 * 22 20 18 24 24 H 1.48500 * 109.47015 * 213.32930 * 22 20 18 25 25 H 1.48503 * 109.46959 * 333.32797 * 22 20 18 26 26 H 1.08997 * 109.46435 * 60.00240 * 1 2 3 27 27 H 1.09005 * 109.47053 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47188 * 300.00163 * 1 2 3 29 29 H 1.09008 * 109.46939 * 119.99750 * 2 1 3 30 30 H 1.09009 * 109.46797 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.46936 * 299.99733 * 3 2 1 32 32 H 1.08992 * 109.47184 * 59.99834 * 3 2 1 33 33 H 1.08996 * 109.47239 * 303.66113 * 4 2 1 34 34 H 1.09001 * 109.46993 * 63.66139 * 4 2 1 35 35 H 1.08994 * 110.71971 * 336.75644 * 7 5 4 36 36 H 1.09004 * 110.71960 * 99.85038 * 7 5 4 37 37 H 1.09002 * 111.00160 * 153.57531 * 8 7 5 38 38 H 1.08996 * 111.00612 * 277.39363 * 8 7 5 39 39 H 1.08997 * 110.36624 * 81.83174 * 9 8 7 40 40 H 1.09006 * 110.36198 * 204.03958 * 9 8 7 41 41 H 1.08997 * 109.46808 * 297.55711 * 14 11 10 42 42 H 1.08991 * 109.47311 * 57.55839 * 14 11 10 43 43 H 1.09009 * 109.46956 * 71.41049 * 16 15 14 44 44 H 1.09000 * 109.47339 * 191.40520 * 16 15 14 45 45 H 1.08993 * 109.47718 * 311.41118 * 16 15 14 46 46 H 1.08997 * 109.47430 * 59.99514 * 17 15 14 47 47 H 1.09000 * 109.47577 * 180.02562 * 17 15 14 48 48 H 1.09002 * 109.47002 * 299.99640 * 17 15 14 49 49 H 0.97001 * 119.99601 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 -1.2492 5 6 3.5673 -0.8015 -1.2040 6 1 3.9832 0.1794 -0.9737 7 6 4.1074 -1.2949 -2.5628 8 6 5.2817 -2.2229 -2.1538 9 6 4.7356 -2.8595 -0.8514 10 7 3.9869 -1.7771 -0.1873 11 16 3.6712 -1.6765 1.4352 12 8 4.7208 -2.4169 2.0431 13 8 3.5214 -0.2842 1.6774 14 6 2.0855 -2.5329 1.6418 15 6 1.7104 -2.5607 3.1249 16 6 2.7951 -3.2993 3.9115 17 6 1.5880 -1.1279 3.6471 18 6 0.3928 -3.2716 3.2965 19 1 -0.0944 -3.7195 2.4429 20 6 -0.1909 -3.3504 4.5431 21 7 -1.2584 -4.0971 4.7234 22 14 0.5347 -2.3966 5.9761 23 1 -0.1468 -1.0823 6.0916 24 1 0.3418 -3.1663 7.2313 25 1 1.9859 -2.1830 5.7444 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.1301 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6242 -1.7283 -1.2825 34 1 1.7313 -0.1711 -2.1380 35 1 3.3429 -1.8547 -3.1014 36 1 4.4648 -0.4578 -3.1626 37 1 5.4622 -2.9828 -2.9142 38 1 6.1857 -1.6462 -1.9583 39 1 4.0719 -3.6919 -1.0853 40 1 5.5580 -3.1968 -0.2203 41 1 1.3127 -2.0067 1.0815 42 1 2.1727 -3.5537 1.2699 43 1 3.6939 -2.6840 3.9566 44 1 2.4395 -3.4975 4.9226 45 1 3.0250 -4.2424 3.4158 46 1 0.8152 -0.6017 3.0867 47 1 1.3212 -1.1477 4.7037 48 1 2.5408 -0.6132 3.5229 49 1 -1.6688 -4.1527 5.6006 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451151987.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:19 Heat of formation + Delta-G solvation = -73.064008 kcal Electronic energy + Delta-G solvation = -28282.091651 eV Core-core repulsion = 24757.447589 eV Total energy + Delta-G solvation = -3524.644062 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.16248 -38.77401 -38.34699 -36.96125 -36.38754 -34.04669 -31.86224 -31.00999 -29.15703 -28.23881 -27.86752 -27.12186 -26.36976 -23.22249 -22.01874 -21.46649 -20.94502 -19.53751 -18.87847 -18.18157 -17.70060 -17.36769 -16.89868 -16.30272 -15.93696 -15.20250 -15.17757 -15.04062 -14.82670 -14.64445 -14.60771 -14.19865 -14.08225 -13.95374 -13.67341 -13.52700 -13.24447 -13.09085 -12.85995 -12.79401 -12.73163 -12.61992 -12.59006 -12.44646 -12.30343 -12.06069 -11.96449 -11.90666 -11.85303 -11.68755 -11.33572 -11.22524 -11.07380 -10.80832 -10.74048 -10.50779 -9.82201 -8.34946 -6.36882 -0.71841 1.26485 1.32831 1.39200 1.75206 2.27087 2.80697 2.99836 3.09583 3.54936 3.72307 3.80330 3.88750 4.02354 4.09129 4.17540 4.19890 4.25479 4.44592 4.46894 4.53828 4.54768 4.63224 4.64869 4.69816 4.74474 4.81991 4.88102 4.91429 4.96688 4.98773 5.06449 5.06564 5.11291 5.13034 5.20189 5.22029 5.27575 5.32217 5.42117 5.45424 5.49727 5.52530 5.58814 5.67504 5.69236 6.25084 6.66373 7.28341 8.81019 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017896 B = 0.005704 C = 0.005111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.189845 B = 4907.822954 C = 5477.173011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.135 4.135 3 C -0.129 4.129 4 C -0.138 4.138 5 C 0.138 3.862 6 H 0.080 0.920 7 C -0.116 4.116 8 C -0.121 4.121 9 C 0.098 3.902 10 N -1.011 6.011 11 S 2.623 3.377 12 O -0.991 6.991 13 O -0.961 6.961 14 C -0.597 4.597 15 C 0.049 3.951 16 C -0.175 4.175 17 C -0.181 4.181 18 C -0.494 4.494 19 H 0.048 0.952 20 C 0.025 3.975 21 N -0.939 5.939 22 Si 0.912 3.088 23 H -0.278 1.278 24 H -0.303 1.303 25 H -0.216 1.216 26 H 0.075 0.925 27 H 0.046 0.954 28 H 0.043 0.957 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.037 0.963 33 H 0.071 0.929 34 H 0.107 0.893 35 H 0.091 0.909 36 H 0.100 0.900 37 H 0.107 0.893 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.145 0.855 42 H 0.130 0.870 43 H 0.049 0.951 44 H 0.058 0.942 45 H 0.062 0.938 46 H 0.068 0.932 47 H 0.045 0.955 48 H 0.060 0.940 49 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.213 7.478 -17.670 22.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C -0.186 4.186 4 C -0.177 4.177 5 C 0.033 3.967 6 H 0.098 0.902 7 C -0.155 4.155 8 C -0.160 4.160 9 C -0.027 4.027 10 N -0.850 5.850 11 S 2.721 3.279 12 O -0.982 6.982 13 O -0.951 6.951 14 C -0.728 4.728 15 C 0.047 3.953 16 C -0.232 4.232 17 C -0.237 4.237 18 C -0.533 4.533 19 H 0.066 0.934 20 C -0.173 4.173 21 N -0.579 5.579 22 Si 0.741 3.259 23 H -0.205 1.205 24 H -0.231 1.231 25 H -0.140 1.140 26 H 0.094 0.906 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.057 0.943 33 H 0.090 0.910 34 H 0.126 0.874 35 H 0.110 0.890 36 H 0.118 0.882 37 H 0.125 0.875 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.089 0.911 41 H 0.162 0.838 42 H 0.148 0.852 43 H 0.068 0.932 44 H 0.077 0.923 45 H 0.081 0.919 46 H 0.087 0.913 47 H 0.063 0.937 48 H 0.078 0.922 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 11.656 7.849 -16.832 21.926 hybrid contribution -1.026 -0.326 1.246 1.647 sum 10.630 7.522 -15.585 20.310 Atomic orbital electron populations 1.21855 0.95081 1.01526 1.02119 1.21847 0.96240 0.98625 0.98641 1.21672 1.01211 0.94702 1.01018 1.22324 0.94710 1.01641 0.98993 1.21754 0.94307 0.92028 0.88585 0.90234 1.22726 0.98115 1.00570 0.94109 1.22765 0.98096 0.99658 0.95473 1.22342 0.95457 0.89662 0.95235 1.58609 1.68671 1.34065 1.23675 1.04531 0.76433 0.74798 0.72118 1.93485 1.54292 1.74937 1.75442 1.93541 1.87027 1.30774 1.83780 1.30762 1.21609 1.14716 1.05670 1.18166 0.95521 0.93051 0.88610 1.22722 0.97447 1.01327 1.01746 1.22801 1.02171 0.97700 1.01072 1.20898 1.03708 1.34136 0.94581 0.93353 1.25659 0.95114 0.95499 1.01027 1.70014 1.23417 1.40161 1.24317 0.86802 0.82138 0.78413 0.78551 1.20528 1.23139 1.14022 0.90557 0.93494 0.93814 0.92576 0.92401 0.91375 0.94345 0.91024 0.87442 0.89039 0.88151 0.87477 0.90657 0.90372 0.91113 0.83753 0.85186 0.93249 0.92343 0.91901 0.91301 0.93659 0.92176 0.92526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.97 8.86 71.98 0.64 -3.33 16 2 C -0.14 -3.62 1.46 -10.79 -0.02 -3.63 16 3 C -0.13 -3.24 8.10 71.98 0.58 -2.65 16 4 C -0.14 -2.79 4.05 30.60 0.12 -2.67 16 5 C 0.14 2.78 2.83 45.34 0.13 2.91 16 6 H 0.08 1.69 6.10 -2.39 -0.01 1.67 16 7 C -0.12 -1.44 6.46 31.78 0.21 -1.23 16 8 C -0.12 -1.59 7.09 31.99 0.23 -1.36 16 9 C 0.10 1.99 7.07 86.86 0.61 2.60 16 10 N -1.01 -26.01 3.32 -484.28 -1.61 -27.62 16 11 S 2.62 91.38 3.86 -56.49 -0.22 91.16 16 12 O -0.99 -39.57 14.96 -127.65 -1.91 -41.47 16 13 O -0.96 -35.39 11.18 -127.65 -1.43 -36.82 16 14 C -0.60 -22.48 4.46 71.98 0.32 -22.16 16 15 C 0.05 2.24 0.52 -52.93 -0.03 2.22 16 16 C -0.18 -7.89 6.80 71.98 0.49 -7.40 16 17 C -0.18 -8.02 6.98 71.98 0.50 -7.51 16 18 C -0.49 -27.09 8.62 25.60 0.22 -26.87 16 19 H 0.05 2.87 7.99 -2.91 -0.02 2.84 16 20 C 0.03 1.44 5.39 84.65 0.46 1.90 16 21 N -0.94 -57.75 13.96 21.45 0.30 -57.45 16 22 Si 0.91 44.48 22.78 68.60 1.56 46.04 16 23 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 24 H -0.30 -14.83 7.11 99.48 0.71 -14.12 16 25 H -0.22 -9.64 4.38 99.48 0.44 -9.21 16 26 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.05 1.34 7.74 -2.38 -0.02 1.32 16 28 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.06 1.81 1.60 -12.58 -0.02 1.79 16 30 H 0.06 1.49 5.63 -2.38 -0.01 1.48 16 31 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.11 1.57 8.12 -2.39 -0.02 1.55 16 35 H 0.09 0.91 7.85 -2.39 -0.02 0.89 16 36 H 0.10 0.85 8.14 -2.38 -0.02 0.83 16 37 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.07 1.59 7.67 -2.38 -0.02 1.57 16 41 H 0.14 5.14 4.72 -2.39 -0.01 5.13 16 42 H 0.13 4.57 8.14 -2.39 -0.02 4.55 16 43 H 0.05 2.10 6.18 -2.38 -0.01 2.08 16 44 H 0.06 2.68 4.29 -2.39 -0.01 2.67 16 45 H 0.06 2.68 8.10 -2.39 -0.02 2.66 16 46 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 47 H 0.05 2.06 2.26 -2.39 -0.01 2.05 16 48 H 0.06 2.47 5.58 -2.39 -0.01 2.46 16 49 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -70.08 349.04 1.81 -68.27 By element: Atomic # 1 Polarization: 26.43 SS G_CDS: 0.64 Total: 27.08 kcal Atomic # 6 Polarization: -73.66 SS G_CDS: 4.47 Total: -69.19 kcal Atomic # 7 Polarization: -83.76 SS G_CDS: -1.31 Total: -85.07 kcal Atomic # 8 Polarization: -74.95 SS G_CDS: -3.34 Total: -78.29 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.56 Total: 46.04 kcal Atomic # 16 Polarization: 91.38 SS G_CDS: -0.22 Total: 91.16 kcal Total: -70.08 1.81 -68.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451151987.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.798 kcal (2) G-P(sol) polarization free energy of solvation -70.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds