Wall clock time and date at job start Tue Mar 31 2020 12:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46595 * 2 1 4 4 C 1.53003 * 109.46919 * 119.99923 * 2 1 3 5 5 H 1.09000 * 109.69935 * 192.07467 * 4 2 1 6 6 C 1.53629 * 109.66310 * 312.66585 * 4 2 1 7 7 C 1.53038 * 109.24074 * 174.55530 * 6 4 2 8 8 C 1.53046 * 109.53491 * 298.51004 * 7 6 4 9 9 C 1.53192 * 109.31387 * 61.36434 * 8 7 6 10 10 N 1.46919 * 109.58925 * 71.72017 * 4 2 1 11 11 S 1.65603 * 120.62728 * 6.62307 * 10 4 2 12 12 O 1.42104 * 104.27480 * 113.66930 * 11 10 4 13 13 O 1.42089 * 104.28061 * 345.80852 * 11 10 4 14 14 C 1.81401 * 104.44893 * 229.73518 * 11 10 4 15 15 C 1.53005 * 109.47013 * 177.62075 * 14 11 10 16 16 C 1.52997 * 109.47182 * 60.00114 * 15 14 11 17 17 C 1.52992 * 109.46885 * 299.99836 * 15 14 11 18 18 C 1.50703 * 109.46867 * 180.02562 * 15 14 11 19 19 H 1.07996 * 119.99996 * 359.97438 * 18 15 14 20 20 C 1.37877 * 119.99767 * 180.02562 * 18 15 14 21 21 N 1.31517 * 119.99871 * 359.71659 * 20 18 15 22 22 Si 1.86801 * 119.99877 * 180.02562 * 20 18 15 23 23 H 1.48493 * 109.47406 * 59.99202 * 22 20 18 24 24 H 1.48504 * 109.46860 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47029 * 299.99204 * 22 20 18 26 26 H 1.08991 * 109.47721 * 317.96975 * 1 2 3 27 27 H 1.08998 * 109.47238 * 77.97410 * 1 2 3 28 28 H 1.09004 * 109.46537 * 197.96707 * 1 2 3 29 29 H 1.08991 * 109.47381 * 239.99761 * 2 1 3 30 30 H 1.08999 * 109.47477 * 64.49616 * 3 2 1 31 31 H 1.09009 * 109.46863 * 184.48877 * 3 2 1 32 32 H 1.09000 * 109.47484 * 304.49127 * 3 2 1 33 33 H 1.08996 * 109.63312 * 54.56281 * 6 4 2 34 34 H 1.09002 * 109.45743 * 294.43628 * 6 4 2 35 35 H 1.09001 * 109.46424 * 178.49337 * 7 6 4 36 36 H 1.09000 * 109.45136 * 58.51967 * 7 6 4 37 37 H 1.09001 * 109.49439 * 301.41332 * 8 7 6 38 38 H 1.09004 * 109.52511 * 181.33708 * 8 7 6 39 39 H 1.09000 * 109.58919 * 185.57508 * 9 8 7 40 40 H 1.09002 * 109.70244 * 65.22255 * 9 8 7 41 41 H 1.08993 * 109.47103 * 57.61984 * 14 11 10 42 42 H 1.08999 * 109.47042 * 297.61853 * 14 11 10 43 43 H 1.08993 * 109.47058 * 180.02562 * 16 15 14 44 44 H 1.09002 * 109.47066 * 300.00155 * 16 15 14 45 45 H 1.09008 * 109.47234 * 60.00049 * 16 15 14 46 46 H 1.08993 * 109.47814 * 300.00292 * 17 15 14 47 47 H 1.09003 * 109.47510 * 60.00589 * 17 15 14 48 48 H 1.09003 * 109.46932 * 180.02562 * 17 15 14 49 49 H 0.97004 * 119.99947 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 3.1086 -0.5413 1.3670 6 6 1.2879 -0.2071 2.4863 7 6 1.7067 -1.0276 3.7083 8 6 1.3311 -2.4954 3.4923 9 6 2.0783 -3.0348 2.2686 10 7 1.7948 -2.1640 1.1197 11 16 1.2164 -2.7976 -0.2968 12 8 2.2829 -3.6014 -0.7825 13 8 0.7604 -1.6667 -1.0262 14 6 -0.1830 -3.8350 0.2095 15 6 -0.8466 -4.4368 -1.0308 16 6 0.1713 -5.2893 -1.7910 17 6 -1.3480 -3.3113 -1.9377 18 6 -2.0096 -5.2982 -0.6102 19 1 -2.2508 -5.4058 0.4369 20 6 -2.7648 -5.9495 -1.5623 21 7 -2.4737 -5.8146 -2.8377 22 14 -4.2067 -7.0166 -1.0410 23 1 -5.1947 -6.1882 -0.3042 24 1 -4.8508 -7.6008 -2.2448 25 1 -3.7212 -8.1086 -0.1596 26 1 -0.3634 0.7632 0.6880 27 1 -0.3633 0.2141 -1.0051 28 1 -0.3632 -0.9776 0.3170 29 1 1.8934 -0.5138 -0.8899 30 1 1.7438 1.9326 0.9275 31 1 3.1270 1.4436 -0.0804 32 1 1.6123 1.9791 -0.8470 33 1 0.2139 -0.3087 2.3304 34 1 1.5340 0.8420 2.6508 35 1 1.1952 -0.6484 4.5931 36 1 2.7845 -0.9454 3.8487 37 1 0.2567 -2.5755 3.3270 38 1 1.6079 -3.0757 4.3726 39 1 1.7403 -4.0481 2.0513 40 1 3.1503 -3.0417 2.4661 41 1 -0.9081 -3.2277 0.7511 42 1 0.1743 -4.6368 0.8556 43 1 -0.3013 -5.7176 -2.6748 44 1 1.0122 -4.6659 -2.0952 45 1 0.5285 -6.0912 -1.1448 46 1 -2.0732 -2.7040 -1.3962 47 1 -0.5072 -2.6880 -2.2420 48 1 -1.8213 -3.7401 -2.8211 49 1 -3.0053 -6.2726 -3.5075 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451208096.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:24 Heat of formation + Delta-G solvation = -36.637139 kcal Electronic energy + Delta-G solvation = -28123.402293 eV Core-core repulsion = 24600.337819 eV Total energy + Delta-G solvation = -3523.064474 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.44584 -37.11659 -36.27034 -35.51459 -34.22135 -32.38129 -31.67184 -29.70865 -27.00385 -26.62870 -25.71529 -25.24378 -24.27829 -23.85600 -20.73458 -20.08433 -19.34702 -18.25200 -16.85888 -15.94915 -15.86882 -15.82343 -15.09646 -14.73937 -14.56495 -14.49198 -14.21938 -13.82055 -13.35241 -13.08704 -12.99833 -12.85860 -12.68878 -12.56657 -12.22364 -11.90605 -11.63925 -11.56662 -11.33740 -11.18424 -11.07181 -10.97068 -10.84438 -10.82115 -10.65286 -10.51467 -10.50178 -10.34823 -10.24479 -10.12042 -9.75764 -9.66207 -9.63755 -9.13095 -8.73183 -8.53574 -8.38367 -6.03469 -4.15535 0.87673 3.12320 3.26402 3.32006 3.33559 4.24042 4.36708 4.50709 4.72504 4.80734 4.93484 5.06044 5.07690 5.21762 5.25891 5.29559 5.40530 5.49922 5.58511 5.66082 5.69897 5.75242 5.80457 5.83272 5.93077 5.97167 6.05020 6.09004 6.17013 6.23242 6.31464 6.38058 6.39463 6.47870 6.70647 6.78919 6.81892 6.83535 6.92050 6.97984 7.05646 7.31901 7.50715 7.67384 7.98059 8.09690 8.33177 8.82567 9.49809 10.97643 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.019007 B = 0.004851 C = 0.004538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.817555 B = 5770.912682 C = 6169.073101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.122 4.122 3 C -0.148 4.148 4 C 0.163 3.837 5 H 0.068 0.932 6 C -0.133 4.133 7 C -0.116 4.116 8 C -0.136 4.136 9 C 0.122 3.878 10 N -1.001 6.001 11 S 2.571 3.429 12 O -0.970 6.970 13 O -0.938 6.938 14 C -0.580 4.580 15 C 0.085 3.915 16 C -0.162 4.162 17 C -0.163 4.163 18 C -0.503 4.503 19 H 0.057 0.943 20 C 0.065 3.935 21 N -0.884 5.884 22 Si 0.895 3.105 23 H -0.277 1.277 24 H -0.286 1.286 25 H -0.277 1.277 26 H 0.018 0.982 27 H 0.061 0.939 28 H 0.043 0.957 29 H 0.121 0.879 30 H 0.050 0.950 31 H 0.048 0.952 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.068 0.932 41 H 0.118 0.882 42 H 0.112 0.888 43 H 0.095 0.905 44 H 0.024 0.976 45 H 0.035 0.965 46 H 0.035 0.965 47 H 0.033 0.967 48 H 0.092 0.908 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.034 10.604 10.853 17.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.141 4.141 3 C -0.206 4.206 4 C 0.057 3.943 5 H 0.086 0.914 6 C -0.172 4.172 7 C -0.154 4.154 8 C -0.175 4.175 9 C -0.004 4.004 10 N -0.839 5.839 11 S 2.673 3.327 12 O -0.960 6.960 13 O -0.928 6.928 14 C -0.713 4.713 15 C 0.083 3.917 16 C -0.220 4.220 17 C -0.221 4.221 18 C -0.542 4.542 19 H 0.075 0.925 20 C -0.137 4.137 21 N -0.522 5.522 22 Si 0.723 3.277 23 H -0.203 1.203 24 H -0.212 1.212 25 H -0.203 1.203 26 H 0.037 0.963 27 H 0.080 0.920 28 H 0.062 0.938 29 H 0.138 0.862 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.087 0.913 41 H 0.136 0.864 42 H 0.130 0.870 43 H 0.114 0.886 44 H 0.042 0.958 45 H 0.054 0.946 46 H 0.054 0.946 47 H 0.052 0.948 48 H 0.111 0.889 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.374 10.691 9.796 16.745 hybrid contribution -1.209 -0.971 0.985 1.837 sum 7.165 9.720 10.781 16.188 Atomic orbital electron populations 1.21626 0.93512 0.98486 1.00802 1.22402 0.98359 0.95477 0.97904 1.21951 1.00282 0.96813 1.01542 1.21214 0.98740 0.78455 0.95890 0.91396 1.22136 1.01596 0.99110 0.94317 1.21469 1.01028 0.95082 0.97796 1.21929 1.01239 0.96632 0.97738 1.21348 1.00247 0.92679 0.86096 1.57861 1.81610 1.14239 1.30145 1.06377 0.77153 0.75106 0.74028 1.93528 1.53636 1.71373 1.77447 1.93888 1.82653 1.44198 1.72040 1.30483 1.16371 1.13172 1.11273 1.17894 0.93918 0.93236 0.86685 1.22251 0.96551 0.99839 1.03327 1.22279 1.00169 0.96791 1.02859 1.20905 1.12106 1.28147 0.93025 0.92463 1.24927 0.97396 0.96402 0.94942 1.69794 1.39676 1.42867 0.99824 0.86613 0.82493 0.80632 0.77988 1.20287 1.21167 1.20286 0.96327 0.91976 0.93842 0.86178 0.93126 0.93322 0.92375 0.90655 0.91203 0.92042 0.92132 0.91170 0.91019 0.90356 0.91337 0.86383 0.86975 0.88624 0.95766 0.94583 0.94617 0.94778 0.88891 0.92706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.29 6.03 37.16 0.22 -1.06 16 2 C -0.12 -1.69 2.12 -90.62 -0.19 -1.89 16 3 C -0.15 -1.66 9.02 37.16 0.34 -1.32 16 4 C 0.16 2.07 2.64 -67.37 -0.18 1.89 16 5 H 0.07 0.81 8.10 -51.93 -0.42 0.38 16 6 C -0.13 -1.41 4.70 -26.39 -0.12 -1.53 16 7 C -0.12 -1.08 5.88 -26.69 -0.16 -1.24 16 8 C -0.14 -1.37 6.08 -26.61 -0.16 -1.53 16 9 C 0.12 1.47 6.29 -3.71 -0.02 1.45 16 10 N -1.00 -14.41 3.06 -106.24 -0.32 -14.74 16 11 S 2.57 47.18 3.31 -107.50 -0.36 46.82 16 12 O -0.97 -20.98 15.90 -57.54 -0.92 -21.89 16 13 O -0.94 -17.58 6.64 -57.54 -0.38 -17.96 16 14 C -0.58 -11.28 4.52 37.16 0.17 -11.11 16 15 C 0.08 2.04 0.52 -155.66 -0.08 1.96 16 16 C -0.16 -4.01 7.79 37.16 0.29 -3.72 16 17 C -0.16 -3.93 7.77 37.15 0.29 -3.64 16 18 C -0.50 -13.12 8.01 -34.44 -0.28 -13.40 16 19 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 20 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 21 N -0.88 -24.05 9.35 55.43 0.52 -23.53 16 22 Si 0.90 20.60 29.54 -169.99 -5.02 15.57 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 H 0.02 0.24 7.28 -51.93 -0.38 -0.14 16 27 H 0.06 1.00 7.81 -51.93 -0.41 0.59 16 28 H 0.04 0.68 5.51 -51.93 -0.29 0.39 16 29 H 0.12 1.96 5.37 -56.06 -0.30 1.66 16 30 H 0.05 0.49 6.85 -51.93 -0.36 0.14 16 31 H 0.05 0.49 8.14 -51.92 -0.42 0.07 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.86 6.31 -51.93 -0.33 0.54 16 34 H 0.07 0.64 7.03 -51.93 -0.36 0.28 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.08 0.94 6.59 -51.93 -0.34 0.59 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.12 2.11 7.97 -51.93 -0.41 1.69 16 42 H 0.11 2.01 7.08 -51.92 -0.37 1.65 16 43 H 0.10 2.54 6.08 -51.93 -0.32 2.23 16 44 H 0.02 0.57 5.58 -51.93 -0.29 0.28 16 45 H 0.03 0.85 8.14 -51.92 -0.42 0.43 16 46 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.03 0.76 5.35 -51.93 -0.28 0.49 16 48 H 0.09 2.44 6.06 -51.93 -0.31 2.13 16 49 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 353.94 15.07 5.33 5.33 Total: -1.00 -29.68 353.94 -9.63 -39.32 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -8.51 Total: 4.58 kcal Atomic # 6 Polarization: -33.53 SS G_CDS: 0.02 Total: -33.51 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: 0.19 Total: -38.27 kcal Atomic # 8 Polarization: -38.55 SS G_CDS: -1.30 Total: -39.85 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 16 Polarization: 47.18 SS G_CDS: -0.36 Total: 46.82 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.68 -9.63 -39.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451208096.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.680 kcal (2) G-P(sol) polarization free energy of solvation -29.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds