Wall clock time and date at job start Tue Mar 31 2020 12:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46595 * 2 1 4 4 C 1.53003 * 109.46919 * 119.99923 * 2 1 3 5 5 H 1.09000 * 109.69935 * 192.07467 * 4 2 1 6 6 C 1.53629 * 109.66310 * 312.66585 * 4 2 1 7 7 C 1.53038 * 109.24074 * 174.55530 * 6 4 2 8 8 C 1.53046 * 109.53491 * 298.51004 * 7 6 4 9 9 C 1.53192 * 109.31387 * 61.36434 * 8 7 6 10 10 N 1.46919 * 109.58925 * 71.72017 * 4 2 1 11 11 S 1.65603 * 120.62728 * 6.62307 * 10 4 2 12 12 O 1.42104 * 104.27480 * 113.66930 * 11 10 4 13 13 O 1.42089 * 104.28061 * 345.80852 * 11 10 4 14 14 C 1.81401 * 104.44893 * 229.73518 * 11 10 4 15 15 C 1.53005 * 109.47013 * 177.62075 * 14 11 10 16 16 C 1.52997 * 109.47182 * 60.00114 * 15 14 11 17 17 C 1.52992 * 109.46885 * 299.99836 * 15 14 11 18 18 C 1.50703 * 109.46867 * 180.02562 * 15 14 11 19 19 H 1.07996 * 119.99996 * 359.97438 * 18 15 14 20 20 C 1.37877 * 119.99767 * 180.02562 * 18 15 14 21 21 N 1.31517 * 119.99871 * 359.71659 * 20 18 15 22 22 Si 1.86801 * 119.99877 * 180.02562 * 20 18 15 23 23 H 1.48493 * 109.47406 * 59.99202 * 22 20 18 24 24 H 1.48504 * 109.46860 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47029 * 299.99204 * 22 20 18 26 26 H 1.08991 * 109.47721 * 317.96975 * 1 2 3 27 27 H 1.08998 * 109.47238 * 77.97410 * 1 2 3 28 28 H 1.09004 * 109.46537 * 197.96707 * 1 2 3 29 29 H 1.08991 * 109.47381 * 239.99761 * 2 1 3 30 30 H 1.08999 * 109.47477 * 64.49616 * 3 2 1 31 31 H 1.09009 * 109.46863 * 184.48877 * 3 2 1 32 32 H 1.09000 * 109.47484 * 304.49127 * 3 2 1 33 33 H 1.08996 * 109.63312 * 54.56281 * 6 4 2 34 34 H 1.09002 * 109.45743 * 294.43628 * 6 4 2 35 35 H 1.09001 * 109.46424 * 178.49337 * 7 6 4 36 36 H 1.09000 * 109.45136 * 58.51967 * 7 6 4 37 37 H 1.09001 * 109.49439 * 301.41332 * 8 7 6 38 38 H 1.09004 * 109.52511 * 181.33708 * 8 7 6 39 39 H 1.09000 * 109.58919 * 185.57508 * 9 8 7 40 40 H 1.09002 * 109.70244 * 65.22255 * 9 8 7 41 41 H 1.08993 * 109.47103 * 57.61984 * 14 11 10 42 42 H 1.08999 * 109.47042 * 297.61853 * 14 11 10 43 43 H 1.08993 * 109.47058 * 180.02562 * 16 15 14 44 44 H 1.09002 * 109.47066 * 300.00155 * 16 15 14 45 45 H 1.09008 * 109.47234 * 60.00049 * 16 15 14 46 46 H 1.08993 * 109.47814 * 300.00292 * 17 15 14 47 47 H 1.09003 * 109.47510 * 60.00589 * 17 15 14 48 48 H 1.09003 * 109.46932 * 180.02562 * 17 15 14 49 49 H 0.97004 * 119.99947 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 3.1086 -0.5413 1.3670 6 6 1.2879 -0.2071 2.4863 7 6 1.7067 -1.0276 3.7083 8 6 1.3311 -2.4954 3.4923 9 6 2.0783 -3.0348 2.2686 10 7 1.7948 -2.1640 1.1197 11 16 1.2164 -2.7976 -0.2968 12 8 2.2829 -3.6014 -0.7825 13 8 0.7604 -1.6667 -1.0262 14 6 -0.1830 -3.8350 0.2095 15 6 -0.8466 -4.4368 -1.0308 16 6 0.1713 -5.2893 -1.7910 17 6 -1.3480 -3.3113 -1.9377 18 6 -2.0096 -5.2982 -0.6102 19 1 -2.2508 -5.4058 0.4369 20 6 -2.7648 -5.9495 -1.5623 21 7 -2.4737 -5.8146 -2.8377 22 14 -4.2067 -7.0166 -1.0410 23 1 -5.1947 -6.1882 -0.3042 24 1 -4.8508 -7.6008 -2.2448 25 1 -3.7212 -8.1086 -0.1596 26 1 -0.3634 0.7632 0.6880 27 1 -0.3633 0.2141 -1.0051 28 1 -0.3632 -0.9776 0.3170 29 1 1.8934 -0.5138 -0.8899 30 1 1.7438 1.9326 0.9275 31 1 3.1270 1.4436 -0.0804 32 1 1.6123 1.9791 -0.8470 33 1 0.2139 -0.3087 2.3304 34 1 1.5340 0.8420 2.6508 35 1 1.1952 -0.6484 4.5931 36 1 2.7845 -0.9454 3.8487 37 1 0.2567 -2.5755 3.3270 38 1 1.6079 -3.0757 4.3726 39 1 1.7403 -4.0481 2.0513 40 1 3.1503 -3.0417 2.4661 41 1 -0.9081 -3.2277 0.7511 42 1 0.1743 -4.6368 0.8556 43 1 -0.3013 -5.7176 -2.6748 44 1 1.0122 -4.6659 -2.0952 45 1 0.5285 -6.0912 -1.1448 46 1 -2.0732 -2.7040 -1.3962 47 1 -0.5072 -2.6880 -2.2420 48 1 -1.8213 -3.7401 -2.8211 49 1 -3.0053 -6.2726 -3.5075 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451208096.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:23 Heat of formation + Delta-G solvation = -53.409504 kcal Electronic energy + Delta-G solvation = -28124.129598 eV Core-core repulsion = 24600.337819 eV Total energy + Delta-G solvation = -3523.791779 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.47993 -38.43721 -38.12438 -37.04117 -35.33367 -33.64886 -33.32089 -30.63183 -28.43708 -27.92078 -27.69328 -27.26425 -25.25095 -24.78393 -21.73121 -21.32460 -20.95746 -19.60535 -18.27587 -17.70053 -17.22844 -17.13675 -16.67988 -16.20279 -15.73158 -15.50418 -15.27969 -14.89736 -14.82733 -14.51457 -14.43897 -14.29595 -14.00873 -13.81373 -13.54105 -13.35040 -13.07595 -12.86919 -12.83476 -12.63631 -12.58981 -12.49446 -12.34235 -12.18886 -12.00944 -11.95894 -11.70838 -11.64877 -11.53582 -11.47964 -11.42507 -11.29113 -10.98218 -10.82236 -10.42595 -10.02800 -9.78125 -8.03592 -6.22481 -0.56581 1.44093 1.44268 1.51683 1.84747 2.43250 2.84282 3.18383 3.41161 3.50834 3.90131 3.99078 4.02390 4.14058 4.17651 4.26852 4.32615 4.43666 4.48384 4.57719 4.68983 4.69983 4.81900 4.84478 4.87434 4.94247 4.96234 4.98715 5.03379 5.07563 5.11767 5.19013 5.21567 5.27374 5.30975 5.35552 5.42279 5.44157 5.50394 5.56142 5.62975 5.70670 5.75352 5.88341 5.96301 6.11068 6.33730 6.81691 7.45689 8.95829 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.019007 B = 0.004851 C = 0.004538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.817555 B = 5770.912682 C = 6169.073101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.126 4.126 3 C -0.143 4.143 4 C 0.158 3.842 5 H 0.083 0.917 6 C -0.130 4.130 7 C -0.114 4.114 8 C -0.135 4.135 9 C 0.109 3.891 10 N -0.995 5.995 11 S 2.584 3.416 12 O -1.007 7.007 13 O -0.946 6.946 14 C -0.584 4.584 15 C 0.074 3.926 16 C -0.157 4.157 17 C -0.156 4.156 18 C -0.519 4.519 19 H 0.060 0.940 20 C 0.018 3.982 21 N -0.908 5.908 22 Si 0.953 3.047 23 H -0.272 1.272 24 H -0.287 1.287 25 H -0.272 1.272 26 H 0.041 0.959 27 H 0.039 0.961 28 H 0.030 0.970 29 H 0.091 0.909 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.093 0.907 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.132 0.868 42 H 0.124 0.876 43 H 0.072 0.928 44 H 0.026 0.974 45 H 0.035 0.965 46 H 0.037 0.963 47 H 0.041 0.959 48 H 0.066 0.934 49 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.498 11.855 13.712 20.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.146 4.146 3 C -0.201 4.201 4 C 0.053 3.947 5 H 0.101 0.899 6 C -0.169 4.169 7 C -0.151 4.151 8 C -0.173 4.173 9 C -0.016 4.016 10 N -0.835 5.835 11 S 2.686 3.314 12 O -0.996 6.996 13 O -0.936 6.936 14 C -0.716 4.716 15 C 0.072 3.928 16 C -0.215 4.215 17 C -0.213 4.213 18 C -0.558 4.558 19 H 0.079 0.921 20 C -0.181 4.181 21 N -0.546 5.546 22 Si 0.779 3.221 23 H -0.197 1.197 24 H -0.212 1.212 25 H -0.197 1.197 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.049 0.951 29 H 0.109 0.891 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.109 0.891 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.112 0.888 39 H 0.092 0.908 40 H 0.102 0.898 41 H 0.150 0.850 42 H 0.142 0.858 43 H 0.090 0.910 44 H 0.045 0.955 45 H 0.055 0.945 46 H 0.056 0.944 47 H 0.060 0.940 48 H 0.085 0.915 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.826 11.928 12.657 19.504 hybrid contribution -1.296 -1.292 0.105 1.833 sum 7.531 10.636 12.763 18.241 Atomic orbital electron populations 1.21596 0.94438 0.98468 0.99990 1.22291 0.97641 0.97306 0.97375 1.21905 1.00911 0.94784 1.02528 1.21435 0.99922 0.77018 0.96286 0.89889 1.22141 1.00645 1.00494 0.93646 1.21481 1.01955 0.94059 0.97616 1.21946 1.00404 0.97656 0.97335 1.21675 1.01649 0.92282 0.85993 1.57569 1.81016 1.15394 1.29493 1.05805 0.76396 0.74437 0.74765 1.93481 1.54643 1.72619 1.78906 1.93929 1.82819 1.43566 1.73262 1.30402 1.17461 1.14231 1.09480 1.17865 0.93602 0.92989 0.88369 1.22176 0.96745 1.00036 1.02547 1.22170 1.00289 0.96932 1.01952 1.21260 1.12830 1.28467 0.93205 0.92143 1.25667 0.99768 0.97664 0.94998 1.69941 1.40510 1.43546 1.00625 0.85693 0.79695 0.79164 0.77568 1.19684 1.21229 1.19709 0.94016 0.94144 0.95135 0.89146 0.91037 0.92227 0.92727 0.91613 0.89120 0.90386 0.90991 0.92007 0.88811 0.90783 0.89805 0.84996 0.85791 0.90957 0.95506 0.94534 0.94351 0.94023 0.91493 0.92930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.52 6.03 71.98 0.43 -2.09 16 2 C -0.13 -3.34 2.12 -10.79 -0.02 -3.37 16 3 C -0.14 -2.87 9.02 71.98 0.65 -2.22 16 4 C 0.16 3.65 2.64 45.12 0.12 3.77 16 5 H 0.08 1.70 8.10 -2.39 -0.02 1.68 16 6 C -0.13 -2.31 4.70 30.82 0.14 -2.16 16 7 C -0.11 -1.65 5.88 30.62 0.18 -1.47 16 8 C -0.13 -2.27 6.08 30.67 0.19 -2.08 16 9 C 0.11 2.39 6.29 86.36 0.54 2.93 16 10 N -0.99 -27.12 3.06 -490.03 -1.50 -28.62 16 11 S 2.58 94.94 3.31 -56.49 -0.19 94.75 16 12 O -1.01 -44.07 15.90 -127.65 -2.03 -46.10 16 13 O -0.95 -35.98 6.64 -127.65 -0.85 -36.82 16 14 C -0.58 -22.66 4.52 71.98 0.33 -22.33 16 15 C 0.07 3.59 0.52 -52.93 -0.03 3.57 16 16 C -0.16 -8.01 7.79 71.98 0.56 -7.45 16 17 C -0.16 -7.69 7.77 71.98 0.56 -7.13 16 18 C -0.52 -27.25 8.01 25.60 0.21 -27.05 16 19 H 0.06 3.06 7.74 -2.91 -0.02 3.03 16 20 C 0.02 0.99 5.15 84.65 0.44 1.42 16 21 N -0.91 -50.66 9.35 21.45 0.20 -50.46 16 22 Si 0.95 42.33 29.54 68.60 2.03 44.35 16 23 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 24 H -0.29 -12.65 7.11 99.48 0.71 -11.95 16 25 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 26 H 0.04 0.99 7.28 -2.39 -0.02 0.97 16 27 H 0.04 1.31 7.81 -2.39 -0.02 1.29 16 28 H 0.03 0.93 5.51 -2.38 -0.01 0.92 16 29 H 0.09 2.97 5.37 -67.75 -0.36 2.61 16 30 H 0.07 1.13 6.85 -2.39 -0.02 1.12 16 31 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 32 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.07 1.31 6.31 -2.39 -0.02 1.30 16 34 H 0.09 1.25 7.03 -2.39 -0.02 1.24 16 35 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.07 1.67 6.59 -2.39 -0.02 1.65 16 40 H 0.08 1.59 8.14 -2.39 -0.02 1.58 16 41 H 0.13 4.65 7.97 -2.39 -0.02 4.63 16 42 H 0.12 4.41 7.08 -2.39 -0.02 4.39 16 43 H 0.07 4.00 6.08 -2.39 -0.01 3.98 16 44 H 0.03 1.31 5.58 -2.39 -0.01 1.29 16 45 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16 46 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 47 H 0.04 1.94 5.35 -2.39 -0.01 1.93 16 48 H 0.07 3.64 6.06 -2.39 -0.01 3.63 16 49 H 0.26 14.00 8.31 -92.71 -0.77 13.23 16 Total: -1.00 -64.87 353.94 2.52 -62.34 By element: Atomic # 1 Polarization: 25.67 SS G_CDS: 0.57 Total: 26.24 kcal Atomic # 6 Polarization: -69.97 SS G_CDS: 4.29 Total: -65.67 kcal Atomic # 7 Polarization: -77.78 SS G_CDS: -1.30 Total: -79.08 kcal Atomic # 8 Polarization: -80.05 SS G_CDS: -2.88 Total: -82.93 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.35 kcal Atomic # 16 Polarization: 94.94 SS G_CDS: -0.19 Total: 94.75 kcal Total: -64.87 2.52 -62.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451208096.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.934 kcal (2) G-P(sol) polarization free energy of solvation -64.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds