Wall clock time and date at job start Tue Mar 31 2020 12:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47166 * 2 1 4 4 C 1.53007 * 109.47002 * 119.99787 * 2 1 3 5 5 H 1.08996 * 109.69944 * 60.75554 * 4 2 1 6 6 C 1.52761 * 109.50669 * 300.64356 * 4 2 1 7 7 C 1.53046 * 109.38144 * 185.70400 * 6 4 2 8 8 C 1.53042 * 109.53650 * 61.24393 * 7 6 4 9 9 C 1.53196 * 109.30766 * 298.63472 * 8 7 6 10 10 N 1.46918 * 108.77974 * 54.63438 * 9 8 7 11 11 S 1.65609 * 120.63048 * 126.36799 * 10 9 8 12 12 O 1.42101 * 104.27226 * 299.36644 * 11 10 9 13 13 O 1.42093 * 104.27428 * 171.50900 * 11 10 9 14 14 C 1.81398 * 104.44757 * 55.43780 * 11 10 9 15 15 C 1.52997 * 109.46720 * 180.02562 * 14 11 10 16 16 C 1.53001 * 109.47543 * 60.00175 * 15 14 11 17 17 C 1.52997 * 109.47453 * 299.99645 * 15 14 11 18 18 C 1.50709 * 109.46722 * 180.02562 * 15 14 11 19 19 H 1.07995 * 120.00240 * 5.57826 * 18 15 14 20 20 C 1.37878 * 119.99520 * 185.58147 * 18 15 14 21 21 N 1.31513 * 119.99799 * 150.27755 * 20 18 15 22 22 Si 1.86800 * 120.00155 * 330.26587 * 20 18 15 23 23 H 1.48499 * 109.47155 * 180.02562 * 22 20 18 24 24 H 1.48492 * 109.47600 * 300.00586 * 22 20 18 25 25 H 1.48502 * 109.47021 * 60.00771 * 22 20 18 26 26 H 1.09000 * 109.47098 * 60.00154 * 1 2 3 27 27 H 1.09000 * 109.47253 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47157 * 300.00411 * 1 2 3 29 29 H 1.08994 * 109.46933 * 239.99414 * 2 1 3 30 30 H 1.09005 * 109.47038 * 175.05984 * 3 2 1 31 31 H 1.09001 * 109.47187 * 295.05766 * 3 2 1 32 32 H 1.08997 * 109.47489 * 55.06114 * 3 2 1 33 33 H 1.09007 * 109.56681 * 65.67132 * 6 4 2 34 34 H 1.09006 * 109.39054 * 305.63082 * 6 4 2 35 35 H 1.08998 * 109.45966 * 301.21821 * 7 6 4 36 36 H 1.09005 * 109.45882 * 181.25623 * 7 6 4 37 37 H 1.08996 * 109.49442 * 178.68393 * 8 7 6 38 38 H 1.08995 * 109.49918 * 58.57800 * 8 7 6 39 39 H 1.09001 * 109.58503 * 294.84793 * 9 8 7 40 40 H 1.09000 * 109.58651 * 174.42647 * 9 8 7 41 41 H 1.08998 * 109.47336 * 59.99911 * 14 11 10 42 42 H 1.08997 * 109.46861 * 300.00025 * 14 11 10 43 43 H 1.08991 * 109.47458 * 173.00872 * 16 15 14 44 44 H 1.09001 * 109.46854 * 293.01739 * 16 15 14 45 45 H 1.09005 * 109.47041 * 53.00901 * 16 15 14 46 46 H 1.09002 * 109.47127 * 303.78881 * 17 15 14 47 47 H 1.09006 * 109.46758 * 63.78619 * 17 15 14 48 48 H 1.08991 * 109.47641 * 183.78284 * 17 15 14 49 49 H 0.96996 * 120.00093 * 354.97034 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6898 -1.7534 1.2464 6 6 1.5180 -0.0111 2.4971 7 6 2.1428 -0.6461 3.7416 8 6 3.6636 -0.4823 3.6911 9 6 4.2099 -1.2029 2.4545 10 7 3.5089 -0.6994 1.2655 11 16 4.3584 -0.1121 -0.0291 12 8 5.0909 0.9842 0.5008 13 8 3.3738 0.0823 -1.0350 14 6 5.4778 -1.4640 -0.4869 15 6 6.3276 -1.0385 -1.6859 16 6 7.1474 0.1994 -1.3165 17 6 5.4136 -0.7108 -2.8683 18 6 7.2573 -2.1620 -2.0666 19 1 7.1819 -3.1174 -1.5690 20 6 8.2041 -1.9698 -3.0503 21 7 9.3377 -2.6353 -3.0108 22 14 7.8765 -0.7645 -4.4394 23 1 9.0414 -0.7419 -5.3601 24 1 6.6643 -1.1869 -5.1858 25 1 7.6633 0.5931 -3.8767 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 3.1264 1.4437 0.0885 31 1 1.7508 1.9301 -0.9309 32 1 1.6063 1.9813 0.8424 33 1 0.4333 -0.1074 2.5451 34 1 1.7880 1.0441 2.4525 35 1 1.8925 -1.7065 3.7728 36 1 1.7542 -0.1550 4.6338 37 1 4.1059 -0.9140 4.5889 38 1 3.9137 0.5771 3.6349 39 1 4.0403 -2.2753 2.5519 40 1 5.2779 -1.0069 2.3595 41 1 4.8939 -2.3461 -0.7497 42 1 6.1293 -1.6972 0.3553 43 1 7.8427 0.4290 -2.1238 44 1 6.4779 1.0456 -1.1618 45 1 7.7054 0.0056 -0.4004 46 1 4.7818 -1.5712 -3.0885 47 1 4.7872 0.1452 -2.6169 48 1 6.0206 -0.4727 -3.7417 49 1 9.5391 -3.2057 -2.2526 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451208097.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:29 Heat of formation + Delta-G solvation = -17.157219 kcal Electronic energy + Delta-G solvation = -28085.950301 eV Core-core repulsion = 24563.730539 eV Total energy + Delta-G solvation = -3522.219762 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.59575 -37.23934 -36.62872 -35.88022 -34.30873 -32.51664 -32.02429 -29.76423 -27.62643 -26.87312 -26.33698 -24.56722 -24.39343 -23.93585 -20.89763 -20.26588 -19.48031 -18.48267 -17.07643 -16.80103 -16.15171 -15.91528 -15.26515 -14.90532 -14.77420 -14.58669 -14.27876 -13.78531 -13.54686 -13.36426 -13.24771 -13.00057 -12.81503 -12.57548 -12.24501 -12.06795 -11.99694 -11.84005 -11.76668 -11.62744 -11.36812 -11.18600 -11.03194 -10.97655 -10.80042 -10.72153 -10.57162 -10.47164 -10.28915 -10.11824 -9.94720 -9.65333 -9.24592 -9.03780 -8.99143 -8.72165 -8.15768 -6.58221 -4.14742 0.71964 2.98788 3.35028 3.40236 3.61194 4.13936 4.42203 4.43241 4.59247 4.75315 4.77131 4.96807 5.00846 5.04974 5.13878 5.24263 5.27338 5.36842 5.44944 5.49870 5.56348 5.63910 5.65256 5.75237 5.83293 5.85970 5.92262 5.93353 5.99392 6.02872 6.07826 6.15781 6.21777 6.25044 6.30569 6.33719 6.46071 6.51651 6.53575 6.70449 6.79018 6.86875 6.89742 7.17619 7.35146 8.02136 8.27977 8.78902 9.47278 10.76950 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.022330 B = 0.004909 C = 0.004416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.632418 B = 5702.744421 C = 6338.753555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.127 4.127 3 C -0.116 4.116 4 C 0.164 3.836 5 H 0.070 0.930 6 C -0.133 4.133 7 C -0.116 4.116 8 C -0.133 4.133 9 C 0.121 3.879 10 N -1.001 6.001 11 S 2.582 3.418 12 O -0.966 6.966 13 O -0.950 6.950 14 C -0.578 4.578 15 C 0.062 3.938 16 C -0.170 4.170 17 C -0.178 4.178 18 C -0.605 4.605 19 H 0.061 0.939 20 C 0.046 3.954 21 N -0.883 5.883 22 Si 1.038 2.962 23 H -0.295 1.295 24 H -0.283 1.283 25 H -0.274 1.274 26 H 0.057 0.943 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.148 0.852 30 H 0.029 0.971 31 H 0.063 0.937 32 H 0.033 0.967 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.079 0.921 41 H 0.121 0.879 42 H 0.116 0.884 43 H 0.066 0.934 44 H 0.037 0.963 45 H 0.053 0.947 46 H 0.060 0.940 47 H 0.046 0.954 48 H 0.051 0.949 49 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.125 3.334 11.663 20.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.148 4.148 3 C -0.173 4.173 4 C 0.058 3.942 5 H 0.088 0.912 6 C -0.172 4.172 7 C -0.154 4.154 8 C -0.172 4.172 9 C -0.004 4.004 10 N -0.838 5.838 11 S 2.685 3.315 12 O -0.955 6.955 13 O -0.940 6.940 14 C -0.710 4.710 15 C 0.059 3.941 16 C -0.228 4.228 17 C -0.235 4.235 18 C -0.642 4.642 19 H 0.079 0.921 20 C -0.162 4.162 21 N -0.514 5.514 22 Si 0.870 3.130 23 H -0.223 1.223 24 H -0.210 1.210 25 H -0.201 1.201 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.165 0.835 30 H 0.047 0.953 31 H 0.082 0.918 32 H 0.052 0.948 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.097 0.903 41 H 0.140 0.860 42 H 0.135 0.865 43 H 0.085 0.915 44 H 0.056 0.944 45 H 0.073 0.927 46 H 0.079 0.921 47 H 0.065 0.935 48 H 0.069 0.931 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.551 4.771 9.911 19.048 hybrid contribution -0.338 -1.362 1.683 2.192 sum -15.889 3.409 11.595 19.963 Atomic orbital electron populations 1.21934 0.95625 1.01331 1.01587 1.22509 0.94966 0.97997 0.99323 1.22145 0.98613 0.95773 1.00804 1.20993 0.78236 0.99323 0.95630 0.91175 1.21996 1.00011 1.00932 0.94295 1.21474 0.95309 1.00863 0.97745 1.21867 0.96127 1.01809 0.97372 1.21360 0.95799 0.98151 0.85114 1.57824 1.14420 1.81045 1.30558 1.06356 0.74197 0.76554 0.74388 1.93539 1.73865 1.49502 1.78603 1.93754 1.52538 1.85626 1.62056 1.30389 1.13773 1.17323 1.09546 1.18151 0.92221 0.95893 0.87838 1.22620 1.01029 0.96734 1.02384 1.22753 0.99424 1.00877 1.00445 1.21578 1.18814 0.98243 1.25589 0.92062 1.25676 0.91558 0.99203 0.99751 1.70859 1.19745 1.27041 1.33762 0.84374 0.74732 0.76909 0.77024 1.22317 1.21044 1.20083 0.92407 0.92889 0.93100 0.83517 0.95289 0.91835 0.94839 0.90874 0.91030 0.91985 0.92004 0.91041 0.91084 0.91390 0.90279 0.86046 0.86511 0.91525 0.94364 0.92744 0.92073 0.93537 0.93063 0.91794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 8.83 37.16 0.33 -1.18 16 2 C -0.13 -1.68 2.14 -90.62 -0.19 -1.87 16 3 C -0.12 -1.72 7.07 37.16 0.26 -1.46 16 4 C 0.16 1.98 2.73 -67.82 -0.19 1.79 16 5 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 6 C -0.13 -1.38 4.62 -26.83 -0.12 -1.50 16 7 C -0.12 -1.06 5.89 -26.69 -0.16 -1.22 16 8 C -0.13 -1.36 6.08 -26.61 -0.16 -1.52 16 9 C 0.12 1.43 6.16 -3.71 -0.02 1.41 16 10 N -1.00 -13.86 3.11 -106.71 -0.33 -14.19 16 11 S 2.58 45.42 2.59 -107.50 -0.28 45.14 16 12 O -0.97 -19.62 14.82 -57.54 -0.85 -20.47 16 13 O -0.95 -16.98 8.04 -57.54 -0.46 -17.45 16 14 C -0.58 -11.05 4.76 37.16 0.18 -10.88 16 15 C 0.06 1.45 0.52 -155.66 -0.08 1.37 16 16 C -0.17 -3.97 7.40 37.16 0.28 -3.70 16 17 C -0.18 -3.99 7.33 37.16 0.27 -3.72 16 18 C -0.60 -16.37 8.41 -34.44 -0.29 -16.66 16 19 H 0.06 1.75 7.99 -52.49 -0.42 1.33 16 20 C 0.05 1.31 5.04 -17.82 -0.09 1.22 16 21 N -0.88 -26.25 13.70 55.43 0.76 -25.50 16 22 Si 1.04 25.43 23.48 -169.99 -3.99 21.44 16 23 H -0.30 -7.29 7.11 56.52 0.40 -6.89 16 24 H -0.28 -6.55 6.74 56.52 0.38 -6.17 16 25 H -0.27 -6.27 5.80 56.52 0.33 -5.94 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.46 6.55 -51.93 -0.34 0.12 16 29 H 0.15 2.20 5.40 -55.36 -0.30 1.90 16 30 H 0.03 0.49 3.31 -23.14 -0.08 0.42 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.03 0.43 6.59 -51.93 -0.34 0.09 16 33 H 0.07 0.63 6.74 -51.93 -0.35 0.28 16 34 H 0.07 0.82 6.27 -51.93 -0.33 0.50 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.08 0.95 7.46 -51.93 -0.39 0.56 16 41 H 0.12 2.14 8.14 -51.93 -0.42 1.71 16 42 H 0.12 2.10 7.68 -51.93 -0.40 1.70 16 43 H 0.07 1.60 4.49 -51.93 -0.23 1.36 16 44 H 0.04 0.83 5.98 -51.93 -0.31 0.52 16 45 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 46 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 47 H 0.05 0.96 5.74 -51.93 -0.30 0.66 16 48 H 0.05 1.18 2.29 -51.93 -0.12 1.06 16 49 H 0.27 7.97 8.73 -40.82 -0.36 7.62 16 LS Contribution 345.27 15.07 5.20 5.20 Total: -1.00 -31.04 345.27 -8.16 -39.21 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -8.22 Total: 4.53 kcal Atomic # 6 Polarization: -37.92 SS G_CDS: 0.01 Total: -37.91 kcal Atomic # 7 Polarization: -40.12 SS G_CDS: 0.43 Total: -39.69 kcal Atomic # 8 Polarization: -36.60 SS G_CDS: -1.32 Total: -37.92 kcal Atomic # 14 Polarization: 25.43 SS G_CDS: -3.99 Total: 21.44 kcal Atomic # 16 Polarization: 45.42 SS G_CDS: -0.28 Total: 45.14 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.04 -8.16 -39.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451208097.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.048 kcal (2) G-P(sol) polarization free energy of solvation -31.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds