Wall clock time and date at job start Tue Mar 31 2020 12:16:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.52997 * 109.47166 * 2 1
4 4 C 1.53007 * 109.47002 * 119.99787 * 2 1 3
5 5 H 1.08996 * 109.69944 * 60.75554 * 4 2 1
6 6 C 1.52761 * 109.50669 * 300.64356 * 4 2 1
7 7 C 1.53046 * 109.38144 * 185.70400 * 6 4 2
8 8 C 1.53042 * 109.53650 * 61.24393 * 7 6 4
9 9 C 1.53196 * 109.30766 * 298.63472 * 8 7 6
10 10 N 1.46918 * 108.77974 * 54.63438 * 9 8 7
11 11 S 1.65609 * 120.63048 * 126.36799 * 10 9 8
12 12 O 1.42101 * 104.27226 * 299.36644 * 11 10 9
13 13 O 1.42093 * 104.27428 * 171.50900 * 11 10 9
14 14 C 1.81398 * 104.44757 * 55.43780 * 11 10 9
15 15 C 1.52997 * 109.46720 * 180.02562 * 14 11 10
16 16 C 1.53001 * 109.47543 * 60.00175 * 15 14 11
17 17 C 1.52997 * 109.47453 * 299.99645 * 15 14 11
18 18 C 1.50709 * 109.46722 * 180.02562 * 15 14 11
19 19 H 1.07995 * 120.00240 * 5.57826 * 18 15 14
20 20 C 1.37878 * 119.99520 * 185.58147 * 18 15 14
21 21 N 1.31513 * 119.99799 * 150.27755 * 20 18 15
22 22 Si 1.86800 * 120.00155 * 330.26587 * 20 18 15
23 23 H 1.48499 * 109.47155 * 180.02562 * 22 20 18
24 24 H 1.48492 * 109.47600 * 300.00586 * 22 20 18
25 25 H 1.48502 * 109.47021 * 60.00771 * 22 20 18
26 26 H 1.09000 * 109.47098 * 60.00154 * 1 2 3
27 27 H 1.09000 * 109.47253 * 180.02562 * 1 2 3
28 28 H 1.09007 * 109.47157 * 300.00411 * 1 2 3
29 29 H 1.08994 * 109.46933 * 239.99414 * 2 1 3
30 30 H 1.09005 * 109.47038 * 175.05984 * 3 2 1
31 31 H 1.09001 * 109.47187 * 295.05766 * 3 2 1
32 32 H 1.08997 * 109.47489 * 55.06114 * 3 2 1
33 33 H 1.09007 * 109.56681 * 65.67132 * 6 4 2
34 34 H 1.09006 * 109.39054 * 305.63082 * 6 4 2
35 35 H 1.08998 * 109.45966 * 301.21821 * 7 6 4
36 36 H 1.09005 * 109.45882 * 181.25623 * 7 6 4
37 37 H 1.08996 * 109.49442 * 178.68393 * 8 7 6
38 38 H 1.08995 * 109.49918 * 58.57800 * 8 7 6
39 39 H 1.09001 * 109.58503 * 294.84793 * 9 8 7
40 40 H 1.09000 * 109.58651 * 174.42647 * 9 8 7
41 41 H 1.08998 * 109.47336 * 59.99911 * 14 11 10
42 42 H 1.08997 * 109.46861 * 300.00025 * 14 11 10
43 43 H 1.08991 * 109.47458 * 173.00872 * 16 15 14
44 44 H 1.09001 * 109.46854 * 293.01739 * 16 15 14
45 45 H 1.09005 * 109.47041 * 53.00901 * 16 15 14
46 46 H 1.09002 * 109.47127 * 303.78881 * 17 15 14
47 47 H 1.09006 * 109.46758 * 63.78619 * 17 15 14
48 48 H 1.08991 * 109.47641 * 183.78284 * 17 15 14
49 49 H 0.96996 * 120.00093 * 354.97034 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7212 1.2493
5 1 1.6898 -1.7534 1.2464
6 6 1.5180 -0.0111 2.4971
7 6 2.1428 -0.6461 3.7416
8 6 3.6636 -0.4823 3.6911
9 6 4.2099 -1.2029 2.4545
10 7 3.5089 -0.6994 1.2655
11 16 4.3584 -0.1121 -0.0291
12 8 5.0909 0.9842 0.5008
13 8 3.3738 0.0823 -1.0350
14 6 5.4778 -1.4640 -0.4869
15 6 6.3276 -1.0385 -1.6859
16 6 7.1474 0.1994 -1.3165
17 6 5.4136 -0.7108 -2.8683
18 6 7.2573 -2.1620 -2.0666
19 1 7.1819 -3.1174 -1.5690
20 6 8.2041 -1.9698 -3.0503
21 7 9.3377 -2.6353 -3.0108
22 14 7.8765 -0.7645 -4.4394
23 1 9.0414 -0.7419 -5.3601
24 1 6.6643 -1.1869 -5.1858
25 1 7.6633 0.5931 -3.8767
26 1 -0.3633 0.5138 -0.8900
27 1 -0.3634 -1.0277 0.0005
28 1 -0.3634 0.5139 0.8900
29 1 1.8933 -0.5139 -0.8899
30 1 3.1264 1.4437 0.0885
31 1 1.7508 1.9301 -0.9309
32 1 1.6063 1.9813 0.8424
33 1 0.4333 -0.1074 2.5451
34 1 1.7880 1.0441 2.4525
35 1 1.8925 -1.7065 3.7728
36 1 1.7542 -0.1550 4.6338
37 1 4.1059 -0.9140 4.5889
38 1 3.9137 0.5771 3.6349
39 1 4.0403 -2.2753 2.5519
40 1 5.2779 -1.0069 2.3595
41 1 4.8939 -2.3461 -0.7497
42 1 6.1293 -1.6972 0.3553
43 1 7.8427 0.4290 -2.1238
44 1 6.4779 1.0456 -1.1618
45 1 7.7054 0.0056 -0.4004
46 1 4.7818 -1.5712 -3.0885
47 1 4.7872 0.1452 -2.6169
48 1 6.0206 -0.4727 -3.7417
49 1 9.5391 -3.2057 -2.2526
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000451208097.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:16:27
Heat of formation + Delta-G solvation = -37.506278 kcal
Electronic energy + Delta-G solvation = -28086.832702 eV
Core-core repulsion = 24563.730539 eV
Total energy + Delta-G solvation = -3523.102163 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 317.181 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-40.57518 -38.50807 -38.42422 -37.31584 -35.36268 -34.13949 -33.43223 -30.64530
-29.08188 -28.20392 -27.98724 -26.62921 -25.33927 -24.82415 -21.81463 -21.66350
-20.97191 -19.74169 -18.99983 -18.15101 -17.44885 -17.14413 -16.63524 -16.31967
-15.92102 -15.60117 -15.34265 -15.09261 -14.94324 -14.89253 -14.63503 -14.27212
-14.09865 -13.95068 -13.71264 -13.55881 -13.43425 -13.18340 -12.92379 -12.85680
-12.72171 -12.56012 -12.41538 -12.25987 -12.05713 -11.88401 -11.83577 -11.75349
-11.67842 -11.52771 -11.32861 -11.15630 -10.96157 -10.74268 -10.35936 -10.24873
-9.80422 -8.78706 -6.35670 -0.65455 1.39954 1.42945 1.66523 1.77043
2.41132 2.79350 2.90802 3.29514 3.45264 3.73814 3.84799 3.94045
3.98494 4.09090 4.21890 4.22708 4.25027 4.37854 4.40911 4.48474
4.55085 4.58137 4.63038 4.67269 4.71458 4.80498 4.82315 4.89136
4.91138 4.94999 4.98310 5.08368 5.09044 5.11155 5.18165 5.24377
5.30999 5.36096 5.40446 5.45240 5.50994 5.56355 5.79149 5.83486
5.97358 6.05480 6.55189 7.32509 8.54615
Molecular weight = 317.18amu
Principal moments of inertia in cm(-1)
A = 0.022330 B = 0.004909 C = 0.004416
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1253.632418 B = 5702.744421 C = 6338.753555
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C -0.130 4.130
3 C -0.122 4.122
4 C 0.157 3.843
5 H 0.092 0.908
6 C -0.132 4.132
7 C -0.114 4.114
8 C -0.133 4.133
9 C 0.108 3.892
10 N -0.995 5.995
11 S 2.602 3.398
12 O -0.996 6.996
13 O -0.953 6.953
14 C -0.591 4.591
15 C 0.052 3.948
16 C -0.172 4.172
17 C -0.182 4.182
18 C -0.603 4.603
19 H 0.034 0.966
20 C 0.002 3.998
21 N -0.917 5.917
22 Si 1.062 2.938
23 H -0.300 1.300
24 H -0.260 1.260
25 H -0.251 1.251
26 H 0.055 0.945
27 H 0.068 0.932
28 H 0.066 0.934
29 H 0.129 0.871
30 H 0.003 0.997
31 H 0.057 0.943
32 H 0.049 0.951
33 H 0.097 0.903
34 H 0.056 0.944
35 H 0.077 0.923
36 H 0.077 0.923
37 H 0.093 0.907
38 H 0.051 0.949
39 H 0.092 0.908
40 H 0.068 0.932
41 H 0.133 0.867
42 H 0.119 0.881
43 H 0.056 0.944
44 H 0.050 0.950
45 H 0.050 0.950
46 H 0.069 0.931
47 H 0.062 0.938
48 H 0.046 0.954
49 H 0.261 0.739
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.251 3.622 12.954 23.484
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.151 4.151
3 C -0.179 4.179
4 C 0.052 3.948
5 H 0.110 0.890
6 C -0.171 4.171
7 C -0.151 4.151
8 C -0.172 4.172
9 C -0.017 4.017
10 N -0.835 5.835
11 S 2.703 3.297
12 O -0.986 6.986
13 O -0.943 6.943
14 C -0.721 4.721
15 C 0.049 3.951
16 C -0.230 4.230
17 C -0.238 4.238
18 C -0.640 4.640
19 H 0.052 0.948
20 C -0.200 4.200
21 N -0.550 5.550
22 Si 0.888 3.112
23 H -0.229 1.229
24 H -0.186 1.186
25 H -0.177 1.177
26 H 0.074 0.926
27 H 0.087 0.913
28 H 0.084 0.916
29 H 0.146 0.854
30 H 0.021 0.979
31 H 0.076 0.924
32 H 0.067 0.933
33 H 0.116 0.884
34 H 0.074 0.926
35 H 0.096 0.904
36 H 0.095 0.905
37 H 0.111 0.889
38 H 0.070 0.930
39 H 0.110 0.890
40 H 0.087 0.913
41 H 0.151 0.849
42 H 0.138 0.862
43 H 0.075 0.925
44 H 0.069 0.931
45 H 0.069 0.931
46 H 0.088 0.912
47 H 0.081 0.919
48 H 0.064 0.936
49 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges -18.671 5.047 11.197 22.348
hybrid contribution 0.556 -1.488 1.404 2.119
sum -18.115 3.559 12.600 22.351
Atomic orbital electron populations
1.21889 0.93097 1.02661 1.02313 1.22427 0.97111 0.96552 0.99022
1.22201 0.96992 0.97483 1.01228 1.21275 0.76722 1.00721 0.96051
0.88990 1.22018 1.01482 0.99796 0.93789 1.21492 0.93988 1.01928
0.97706 1.21892 0.97453 1.00508 0.97304 1.21681 0.95327 0.99808
0.84915 1.57565 1.15240 1.80948 1.29745 1.05701 0.73573 0.75446
0.74948 1.93495 1.75073 1.50644 1.79390 1.93800 1.51552 1.85650
1.63301 1.30424 1.14405 1.19194 1.08045 1.18114 0.92528 0.94374
0.90107 1.22614 1.01114 0.97370 1.01856 1.22753 0.99458 1.02036
0.99594 1.21760 1.19259 0.98365 1.24660 0.94769 1.26773 0.91245
1.00207 1.01809 1.70961 1.21311 1.28866 1.33894 0.84087 0.75322
0.76642 0.75128 1.22867 1.18621 1.17662 0.92592 0.91254 0.91551
0.85442 0.97877 0.92358 0.93275 0.88440 0.92578 0.90413 0.90451
0.88869 0.93040 0.88953 0.91319 0.84906 0.86239 0.92513 0.93115
0.93064 0.91154 0.91931 0.93573 0.93005
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.43 8.83 71.98 0.64 -1.79 16
2 C -0.13 -3.11 2.14 -10.79 -0.02 -3.14 16
3 C -0.12 -3.44 7.07 71.98 0.51 -2.94 16
4 C 0.16 3.31 2.73 44.83 0.12 3.43 16
5 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16
6 C -0.13 -2.24 4.62 30.53 0.14 -2.10 16
7 C -0.11 -1.62 5.89 30.62 0.18 -1.44 16
8 C -0.13 -2.37 6.08 30.67 0.19 -2.18 16
9 C 0.11 2.32 6.16 86.37 0.53 2.85 16
10 N -0.99 -25.69 3.11 -491.53 -1.53 -27.22 16
11 S 2.60 89.41 2.59 -56.49 -0.15 89.27 16
12 O -1.00 -40.40 14.82 -127.65 -1.89 -42.29 16
13 O -0.95 -33.05 8.04 -127.65 -1.03 -34.08 16
14 C -0.59 -22.42 4.76 71.98 0.34 -22.08 16
15 C 0.05 2.40 0.52 -52.93 -0.03 2.37 16
16 C -0.17 -8.05 7.40 71.98 0.53 -7.51 16
17 C -0.18 -7.91 7.33 71.98 0.53 -7.38 16
18 C -0.60 -33.26 8.41 25.60 0.22 -33.04 16
19 H 0.03 2.02 7.99 -2.91 -0.02 1.99 16
20 C 0.00 0.11 5.04 84.66 0.43 0.54 16
21 N -0.92 -56.21 13.70 21.45 0.29 -55.92 16
22 Si 1.06 50.93 23.48 68.60 1.61 52.54 16
23 H -0.30 -14.58 7.11 99.48 0.71 -13.88 16
24 H -0.26 -11.44 6.74 99.48 0.67 -10.77 16
25 H -0.25 -11.05 5.80 99.48 0.58 -10.48 16
26 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16
27 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16
28 H 0.07 0.94 6.55 -2.38 -0.02 0.92 16
29 H 0.13 3.59 5.40 -72.98 -0.39 3.20 16
30 H 0.00 0.09 3.31 -21.08 -0.07 0.02 16
31 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16
32 H 0.05 1.20 6.59 -2.39 -0.02 1.18 16
33 H 0.10 1.20 6.74 -2.38 -0.02 1.19 16
34 H 0.06 1.14 6.27 -2.38 -0.01 1.12 16
35 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16
36 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16
37 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16
38 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16
39 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16
40 H 0.07 1.61 7.46 -2.39 -0.02 1.59 16
41 H 0.13 4.61 8.14 -2.39 -0.02 4.59 16
42 H 0.12 4.35 7.68 -2.39 -0.02 4.33 16
43 H 0.06 2.71 4.49 -2.39 -0.01 2.70 16
44 H 0.05 2.21 5.98 -2.39 -0.01 2.20 16
45 H 0.05 2.35 8.14 -2.38 -0.02 2.33 16
46 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16
47 H 0.06 2.50 5.74 -2.38 -0.01 2.48 16
48 H 0.05 2.04 2.29 -2.39 -0.01 2.04 16
49 H 0.26 15.98 8.73 -92.71 -0.81 15.17 16
Total: -1.00 -68.49 345.27 1.89 -66.59
By element:
Atomic # 1 Polarization: 25.23 SS G_CDS: 0.28 Total: 25.51 kcal
Atomic # 6 Polarization: -78.71 SS G_CDS: 4.30 Total: -74.41 kcal
Atomic # 7 Polarization: -81.90 SS G_CDS: -1.24 Total: -83.13 kcal
Atomic # 8 Polarization: -73.45 SS G_CDS: -2.92 Total: -76.37 kcal
Atomic # 14 Polarization: 50.93 SS G_CDS: 1.61 Total: 52.54 kcal
Atomic # 16 Polarization: 89.41 SS G_CDS: -0.15 Total: 89.27 kcal
Total: -68.49 1.89 -66.59 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000451208097.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 29.085 kcal
(2) G-P(sol) polarization free energy of solvation -68.485 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.400 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.894 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.591 kcal
(6) G-S(sol) free energy of system = (1) + (5) -37.506 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds