Wall clock time and date at job start Tue Mar 31 2020 12:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47166 * 2 1 4 4 C 1.53007 * 109.47002 * 119.99787 * 2 1 3 5 5 H 1.08996 * 109.69944 * 60.75554 * 4 2 1 6 6 C 1.52761 * 109.50669 * 300.64356 * 4 2 1 7 7 C 1.53046 * 109.38144 * 185.70400 * 6 4 2 8 8 C 1.53042 * 109.53650 * 61.24393 * 7 6 4 9 9 C 1.53196 * 109.30766 * 298.63472 * 8 7 6 10 10 N 1.46918 * 108.77974 * 54.63438 * 9 8 7 11 11 S 1.65609 * 120.63048 * 126.36799 * 10 9 8 12 12 O 1.42101 * 104.27226 * 299.36644 * 11 10 9 13 13 O 1.42093 * 104.27428 * 171.50900 * 11 10 9 14 14 C 1.81398 * 104.44757 * 55.43780 * 11 10 9 15 15 C 1.52997 * 109.46720 * 180.02562 * 14 11 10 16 16 C 1.53001 * 109.47543 * 60.00175 * 15 14 11 17 17 C 1.52997 * 109.47453 * 299.99645 * 15 14 11 18 18 C 1.50709 * 109.46722 * 180.02562 * 15 14 11 19 19 H 1.07995 * 120.00240 * 5.57826 * 18 15 14 20 20 C 1.37878 * 119.99520 * 185.58147 * 18 15 14 21 21 N 1.31513 * 119.99799 * 150.27755 * 20 18 15 22 22 Si 1.86800 * 120.00155 * 330.26587 * 20 18 15 23 23 H 1.48499 * 109.47155 * 180.02562 * 22 20 18 24 24 H 1.48492 * 109.47600 * 300.00586 * 22 20 18 25 25 H 1.48502 * 109.47021 * 60.00771 * 22 20 18 26 26 H 1.09000 * 109.47098 * 60.00154 * 1 2 3 27 27 H 1.09000 * 109.47253 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47157 * 300.00411 * 1 2 3 29 29 H 1.08994 * 109.46933 * 239.99414 * 2 1 3 30 30 H 1.09005 * 109.47038 * 175.05984 * 3 2 1 31 31 H 1.09001 * 109.47187 * 295.05766 * 3 2 1 32 32 H 1.08997 * 109.47489 * 55.06114 * 3 2 1 33 33 H 1.09007 * 109.56681 * 65.67132 * 6 4 2 34 34 H 1.09006 * 109.39054 * 305.63082 * 6 4 2 35 35 H 1.08998 * 109.45966 * 301.21821 * 7 6 4 36 36 H 1.09005 * 109.45882 * 181.25623 * 7 6 4 37 37 H 1.08996 * 109.49442 * 178.68393 * 8 7 6 38 38 H 1.08995 * 109.49918 * 58.57800 * 8 7 6 39 39 H 1.09001 * 109.58503 * 294.84793 * 9 8 7 40 40 H 1.09000 * 109.58651 * 174.42647 * 9 8 7 41 41 H 1.08998 * 109.47336 * 59.99911 * 14 11 10 42 42 H 1.08997 * 109.46861 * 300.00025 * 14 11 10 43 43 H 1.08991 * 109.47458 * 173.00872 * 16 15 14 44 44 H 1.09001 * 109.46854 * 293.01739 * 16 15 14 45 45 H 1.09005 * 109.47041 * 53.00901 * 16 15 14 46 46 H 1.09002 * 109.47127 * 303.78881 * 17 15 14 47 47 H 1.09006 * 109.46758 * 63.78619 * 17 15 14 48 48 H 1.08991 * 109.47641 * 183.78284 * 17 15 14 49 49 H 0.96996 * 120.00093 * 354.97034 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6898 -1.7534 1.2464 6 6 1.5180 -0.0111 2.4971 7 6 2.1428 -0.6461 3.7416 8 6 3.6636 -0.4823 3.6911 9 6 4.2099 -1.2029 2.4545 10 7 3.5089 -0.6994 1.2655 11 16 4.3584 -0.1121 -0.0291 12 8 5.0909 0.9842 0.5008 13 8 3.3738 0.0823 -1.0350 14 6 5.4778 -1.4640 -0.4869 15 6 6.3276 -1.0385 -1.6859 16 6 7.1474 0.1994 -1.3165 17 6 5.4136 -0.7108 -2.8683 18 6 7.2573 -2.1620 -2.0666 19 1 7.1819 -3.1174 -1.5690 20 6 8.2041 -1.9698 -3.0503 21 7 9.3377 -2.6353 -3.0108 22 14 7.8765 -0.7645 -4.4394 23 1 9.0414 -0.7419 -5.3601 24 1 6.6643 -1.1869 -5.1858 25 1 7.6633 0.5931 -3.8767 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 3.1264 1.4437 0.0885 31 1 1.7508 1.9301 -0.9309 32 1 1.6063 1.9813 0.8424 33 1 0.4333 -0.1074 2.5451 34 1 1.7880 1.0441 2.4525 35 1 1.8925 -1.7065 3.7728 36 1 1.7542 -0.1550 4.6338 37 1 4.1059 -0.9140 4.5889 38 1 3.9137 0.5771 3.6349 39 1 4.0403 -2.2753 2.5519 40 1 5.2779 -1.0069 2.3595 41 1 4.8939 -2.3461 -0.7497 42 1 6.1293 -1.6972 0.3553 43 1 7.8427 0.4290 -2.1238 44 1 6.4779 1.0456 -1.1618 45 1 7.7054 0.0056 -0.4004 46 1 4.7818 -1.5712 -3.0885 47 1 4.7872 0.1452 -2.6169 48 1 6.0206 -0.4727 -3.7417 49 1 9.5391 -3.2057 -2.2526 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451208097.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:27 Heat of formation + Delta-G solvation = -37.506278 kcal Electronic energy + Delta-G solvation = -28086.832702 eV Core-core repulsion = 24563.730539 eV Total energy + Delta-G solvation = -3523.102163 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.57518 -38.50807 -38.42422 -37.31584 -35.36268 -34.13949 -33.43223 -30.64530 -29.08188 -28.20392 -27.98724 -26.62921 -25.33927 -24.82415 -21.81463 -21.66350 -20.97191 -19.74169 -18.99983 -18.15101 -17.44885 -17.14413 -16.63524 -16.31967 -15.92102 -15.60117 -15.34265 -15.09261 -14.94324 -14.89253 -14.63503 -14.27212 -14.09865 -13.95068 -13.71264 -13.55881 -13.43425 -13.18340 -12.92379 -12.85680 -12.72171 -12.56012 -12.41538 -12.25987 -12.05713 -11.88401 -11.83577 -11.75349 -11.67842 -11.52771 -11.32861 -11.15630 -10.96157 -10.74268 -10.35936 -10.24873 -9.80422 -8.78706 -6.35670 -0.65455 1.39954 1.42945 1.66523 1.77043 2.41132 2.79350 2.90802 3.29514 3.45264 3.73814 3.84799 3.94045 3.98494 4.09090 4.21890 4.22708 4.25027 4.37854 4.40911 4.48474 4.55085 4.58137 4.63038 4.67269 4.71458 4.80498 4.82315 4.89136 4.91138 4.94999 4.98310 5.08368 5.09044 5.11155 5.18165 5.24377 5.30999 5.36096 5.40446 5.45240 5.50994 5.56355 5.79149 5.83486 5.97358 6.05480 6.55189 7.32509 8.54615 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.022330 B = 0.004909 C = 0.004416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.632418 B = 5702.744421 C = 6338.753555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.130 4.130 3 C -0.122 4.122 4 C 0.157 3.843 5 H 0.092 0.908 6 C -0.132 4.132 7 C -0.114 4.114 8 C -0.133 4.133 9 C 0.108 3.892 10 N -0.995 5.995 11 S 2.602 3.398 12 O -0.996 6.996 13 O -0.953 6.953 14 C -0.591 4.591 15 C 0.052 3.948 16 C -0.172 4.172 17 C -0.182 4.182 18 C -0.603 4.603 19 H 0.034 0.966 20 C 0.002 3.998 21 N -0.917 5.917 22 Si 1.062 2.938 23 H -0.300 1.300 24 H -0.260 1.260 25 H -0.251 1.251 26 H 0.055 0.945 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.129 0.871 30 H 0.003 0.997 31 H 0.057 0.943 32 H 0.049 0.951 33 H 0.097 0.903 34 H 0.056 0.944 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.093 0.907 38 H 0.051 0.949 39 H 0.092 0.908 40 H 0.068 0.932 41 H 0.133 0.867 42 H 0.119 0.881 43 H 0.056 0.944 44 H 0.050 0.950 45 H 0.050 0.950 46 H 0.069 0.931 47 H 0.062 0.938 48 H 0.046 0.954 49 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.251 3.622 12.954 23.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.151 4.151 3 C -0.179 4.179 4 C 0.052 3.948 5 H 0.110 0.890 6 C -0.171 4.171 7 C -0.151 4.151 8 C -0.172 4.172 9 C -0.017 4.017 10 N -0.835 5.835 11 S 2.703 3.297 12 O -0.986 6.986 13 O -0.943 6.943 14 C -0.721 4.721 15 C 0.049 3.951 16 C -0.230 4.230 17 C -0.238 4.238 18 C -0.640 4.640 19 H 0.052 0.948 20 C -0.200 4.200 21 N -0.550 5.550 22 Si 0.888 3.112 23 H -0.229 1.229 24 H -0.186 1.186 25 H -0.177 1.177 26 H 0.074 0.926 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.146 0.854 30 H 0.021 0.979 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.116 0.884 34 H 0.074 0.926 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.111 0.889 38 H 0.070 0.930 39 H 0.110 0.890 40 H 0.087 0.913 41 H 0.151 0.849 42 H 0.138 0.862 43 H 0.075 0.925 44 H 0.069 0.931 45 H 0.069 0.931 46 H 0.088 0.912 47 H 0.081 0.919 48 H 0.064 0.936 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -18.671 5.047 11.197 22.348 hybrid contribution 0.556 -1.488 1.404 2.119 sum -18.115 3.559 12.600 22.351 Atomic orbital electron populations 1.21889 0.93097 1.02661 1.02313 1.22427 0.97111 0.96552 0.99022 1.22201 0.96992 0.97483 1.01228 1.21275 0.76722 1.00721 0.96051 0.88990 1.22018 1.01482 0.99796 0.93789 1.21492 0.93988 1.01928 0.97706 1.21892 0.97453 1.00508 0.97304 1.21681 0.95327 0.99808 0.84915 1.57565 1.15240 1.80948 1.29745 1.05701 0.73573 0.75446 0.74948 1.93495 1.75073 1.50644 1.79390 1.93800 1.51552 1.85650 1.63301 1.30424 1.14405 1.19194 1.08045 1.18114 0.92528 0.94374 0.90107 1.22614 1.01114 0.97370 1.01856 1.22753 0.99458 1.02036 0.99594 1.21760 1.19259 0.98365 1.24660 0.94769 1.26773 0.91245 1.00207 1.01809 1.70961 1.21311 1.28866 1.33894 0.84087 0.75322 0.76642 0.75128 1.22867 1.18621 1.17662 0.92592 0.91254 0.91551 0.85442 0.97877 0.92358 0.93275 0.88440 0.92578 0.90413 0.90451 0.88869 0.93040 0.88953 0.91319 0.84906 0.86239 0.92513 0.93115 0.93064 0.91154 0.91931 0.93573 0.93005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 8.83 71.98 0.64 -1.79 16 2 C -0.13 -3.11 2.14 -10.79 -0.02 -3.14 16 3 C -0.12 -3.44 7.07 71.98 0.51 -2.94 16 4 C 0.16 3.31 2.73 44.83 0.12 3.43 16 5 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 6 C -0.13 -2.24 4.62 30.53 0.14 -2.10 16 7 C -0.11 -1.62 5.89 30.62 0.18 -1.44 16 8 C -0.13 -2.37 6.08 30.67 0.19 -2.18 16 9 C 0.11 2.32 6.16 86.37 0.53 2.85 16 10 N -0.99 -25.69 3.11 -491.53 -1.53 -27.22 16 11 S 2.60 89.41 2.59 -56.49 -0.15 89.27 16 12 O -1.00 -40.40 14.82 -127.65 -1.89 -42.29 16 13 O -0.95 -33.05 8.04 -127.65 -1.03 -34.08 16 14 C -0.59 -22.42 4.76 71.98 0.34 -22.08 16 15 C 0.05 2.40 0.52 -52.93 -0.03 2.37 16 16 C -0.17 -8.05 7.40 71.98 0.53 -7.51 16 17 C -0.18 -7.91 7.33 71.98 0.53 -7.38 16 18 C -0.60 -33.26 8.41 25.60 0.22 -33.04 16 19 H 0.03 2.02 7.99 -2.91 -0.02 1.99 16 20 C 0.00 0.11 5.04 84.66 0.43 0.54 16 21 N -0.92 -56.21 13.70 21.45 0.29 -55.92 16 22 Si 1.06 50.93 23.48 68.60 1.61 52.54 16 23 H -0.30 -14.58 7.11 99.48 0.71 -13.88 16 24 H -0.26 -11.44 6.74 99.48 0.67 -10.77 16 25 H -0.25 -11.05 5.80 99.48 0.58 -10.48 16 26 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.07 0.94 6.55 -2.38 -0.02 0.92 16 29 H 0.13 3.59 5.40 -72.98 -0.39 3.20 16 30 H 0.00 0.09 3.31 -21.08 -0.07 0.02 16 31 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.05 1.20 6.59 -2.39 -0.02 1.18 16 33 H 0.10 1.20 6.74 -2.38 -0.02 1.19 16 34 H 0.06 1.14 6.27 -2.38 -0.01 1.12 16 35 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 37 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.07 1.61 7.46 -2.39 -0.02 1.59 16 41 H 0.13 4.61 8.14 -2.39 -0.02 4.59 16 42 H 0.12 4.35 7.68 -2.39 -0.02 4.33 16 43 H 0.06 2.71 4.49 -2.39 -0.01 2.70 16 44 H 0.05 2.21 5.98 -2.39 -0.01 2.20 16 45 H 0.05 2.35 8.14 -2.38 -0.02 2.33 16 46 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 47 H 0.06 2.50 5.74 -2.38 -0.01 2.48 16 48 H 0.05 2.04 2.29 -2.39 -0.01 2.04 16 49 H 0.26 15.98 8.73 -92.71 -0.81 15.17 16 Total: -1.00 -68.49 345.27 1.89 -66.59 By element: Atomic # 1 Polarization: 25.23 SS G_CDS: 0.28 Total: 25.51 kcal Atomic # 6 Polarization: -78.71 SS G_CDS: 4.30 Total: -74.41 kcal Atomic # 7 Polarization: -81.90 SS G_CDS: -1.24 Total: -83.13 kcal Atomic # 8 Polarization: -73.45 SS G_CDS: -2.92 Total: -76.37 kcal Atomic # 14 Polarization: 50.93 SS G_CDS: 1.61 Total: 52.54 kcal Atomic # 16 Polarization: 89.41 SS G_CDS: -0.15 Total: 89.27 kcal Total: -68.49 1.89 -66.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451208097.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.085 kcal (2) G-P(sol) polarization free energy of solvation -68.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds