Wall clock time and date at job start Tue Mar 31 2020 11:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.47360 * 2 1 4 4 C 1.53004 * 109.47077 * 240.00420 * 2 1 3 5 5 C 1.53005 * 109.47159 * 184.22906 * 4 2 1 6 6 H 1.08999 * 110.88486 * 301.85763 * 5 4 2 7 7 C 1.55159 * 111.00484 * 65.73767 * 5 4 2 8 8 C 1.54322 * 102.94301 * 153.57473 * 7 5 4 9 9 N 1.47019 * 107.27002 * 337.81337 * 8 7 5 10 10 S 1.65602 * 125.65027 * 178.98768 * 9 8 7 11 11 O 1.42094 * 104.27910 * 206.04215 * 10 9 8 12 12 O 1.42101 * 104.27480 * 333.89791 * 10 9 8 13 13 C 1.81400 * 104.45026 * 89.96781 * 10 9 8 14 14 C 1.53007 * 109.46901 * 180.02562 * 13 10 9 15 15 C 1.52993 * 109.47013 * 299.99996 * 14 13 10 16 16 C 1.52998 * 109.47084 * 60.00194 * 14 13 10 17 17 C 1.50701 * 109.46885 * 180.02562 * 14 13 10 18 18 H 1.08000 * 120.00254 * 1.55091 * 17 14 13 19 19 C 1.37879 * 119.99808 * 181.55928 * 17 14 13 20 20 N 1.31510 * 119.99661 * 193.29216 * 19 17 14 21 21 Si 1.86799 * 120.00259 * 13.28712 * 19 17 14 22 22 H 1.48501 * 109.46650 * 86.97888 * 21 19 17 23 23 H 1.48496 * 109.47459 * 206.97841 * 21 19 17 24 24 H 1.48497 * 109.47153 * 326.98368 * 21 19 17 25 25 C 1.47428 * 108.70788 * 358.93335 * 9 8 7 26 26 H 1.08999 * 109.47535 * 55.26974 * 1 2 3 27 27 H 1.08999 * 109.46788 * 175.27094 * 1 2 3 28 28 H 1.09001 * 109.46901 * 295.26295 * 1 2 3 29 29 H 1.08996 * 109.47409 * 120.00286 * 2 1 3 30 30 H 1.09003 * 109.46705 * 59.99806 * 3 2 1 31 31 H 1.08996 * 109.47513 * 180.02562 * 3 2 1 32 32 H 1.09006 * 109.46994 * 300.00504 * 3 2 1 33 33 H 1.08994 * 109.46722 * 304.22600 * 4 2 1 34 34 H 1.08994 * 109.47187 * 64.23030 * 4 2 1 35 35 H 1.08996 * 110.71925 * 271.94519 * 7 5 4 36 36 H 1.09004 * 110.71692 * 35.21067 * 7 5 4 37 37 H 1.09008 * 109.88053 * 97.22205 * 8 7 5 38 38 H 1.08999 * 109.88486 * 218.39152 * 8 7 5 39 39 H 1.08997 * 109.47270 * 300.00043 * 13 10 9 40 40 H 1.08998 * 109.47120 * 60.00702 * 13 10 9 41 41 H 1.09007 * 109.47266 * 71.21589 * 15 14 13 42 42 H 1.09006 * 109.47125 * 191.21409 * 15 14 13 43 43 H 1.09002 * 109.47353 * 311.21238 * 15 14 13 44 44 H 1.08998 * 109.47175 * 59.99480 * 16 14 13 45 45 H 1.09000 * 109.47109 * 179.97438 * 16 14 13 46 46 H 1.09001 * 109.47343 * 299.99898 * 16 14 13 47 47 H 0.97008 * 120.00169 * 179.97438 * 20 19 17 48 48 H 1.08998 * 110.36991 * 265.29622 * 25 9 8 49 49 H 1.09001 * 110.36900 * 142.96688 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5663 -0.8140 -1.1973 6 1 4.0136 0.1774 -1.1249 7 6 4.0288 -1.7197 -0.0255 8 6 5.3983 -2.2400 -0.5105 9 7 5.4149 -2.1248 -1.9760 10 16 6.6804 -2.5351 -2.9622 11 8 6.5056 -1.7210 -4.1136 12 8 7.8278 -2.3979 -2.1352 13 6 6.3921 -4.2798 -3.3664 14 6 7.5089 -4.7820 -4.2839 15 6 7.5216 -3.9556 -5.5713 16 6 8.8560 -4.6391 -3.5727 17 6 7.2691 -6.2313 -4.6202 18 1 6.3932 -6.7361 -4.2401 19 6 8.1680 -6.9129 -5.4130 20 7 7.8419 -8.0808 -5.9221 21 14 9.8488 -6.1774 -5.7640 22 1 10.7924 -6.5612 -4.6835 23 1 10.3511 -6.6887 -7.0645 24 1 9.7391 -4.6977 -5.8229 25 6 4.1178 -1.5848 -2.4226 26 1 -0.3634 0.5855 -0.8445 27 1 -0.3633 -1.0242 -0.0847 28 1 -0.3633 0.4386 0.9294 29 1 1.8933 -0.5138 0.8899 30 1 1.6766 1.9563 0.8900 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6161 -1.7246 -1.2880 34 1 1.7398 -0.1654 -2.1376 35 1 4.1390 -1.1391 0.8904 36 1 3.3326 -2.5454 0.1217 37 1 6.1976 -1.6350 -0.0821 38 1 5.5230 -3.2829 -0.2191 39 1 6.3835 -4.8687 -2.4493 40 1 5.4322 -4.3817 -3.8727 41 1 7.8887 -2.9521 -5.3554 42 1 8.1749 -4.4319 -6.3024 43 1 6.5104 -3.8938 -5.9735 44 1 8.8469 -5.2279 -2.6555 45 1 9.6516 -4.9973 -4.2261 46 1 9.0293 -3.5908 -3.3298 47 1 8.4741 -8.5602 -6.4802 48 1 3.4428 -2.3960 -2.6957 49 1 4.2585 -0.9075 -3.2649 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451261800.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:29 Heat of formation + Delta-G solvation = -76.234687 kcal Electronic energy + Delta-G solvation = -26275.691788 eV Core-core repulsion = 22750.910235 eV Total energy + Delta-G solvation = -3524.781553 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.17115 -36.74184 -36.69843 -36.22557 -35.45192 -31.94822 -31.40881 -29.52196 -27.47901 -27.43253 -26.38365 -25.91809 -25.01678 -22.39055 -21.24410 -19.88773 -19.55814 -18.52113 -17.53909 -16.55890 -16.17475 -15.67053 -15.44315 -15.29750 -14.84582 -14.49477 -14.07086 -13.78606 -13.51442 -13.27940 -13.16449 -13.05045 -12.92564 -12.80891 -12.51423 -12.43825 -12.21703 -12.03275 -11.79038 -11.59604 -11.52914 -11.38488 -11.29301 -11.15249 -11.09393 -10.99380 -10.77217 -10.71253 -10.63734 -10.53259 -10.17649 -10.07807 -9.98393 -9.13275 -8.85009 -8.68920 -8.47882 -6.19267 -4.17240 0.66376 2.99236 3.25270 3.34524 3.38469 4.15146 4.22030 4.33897 4.37095 4.51295 4.60300 4.71256 4.79195 4.96010 5.10297 5.17780 5.22470 5.29651 5.32599 5.35043 5.42265 5.49288 5.52658 5.53866 5.60448 5.64819 5.65633 5.75033 5.79400 5.85427 5.92236 5.98768 5.99844 6.09941 6.12541 6.20664 6.25827 6.31876 6.42191 6.46372 6.49671 6.71667 6.87061 7.12483 7.30899 7.62005 8.38835 8.83037 9.44326 10.93309 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.029314 B = 0.003201 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.930419 B = 8744.531720 C = 9035.526757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.097 4.097 3 C -0.150 4.150 4 C -0.106 4.106 5 C -0.100 4.100 6 H 0.086 0.914 7 C -0.123 4.123 8 C 0.119 3.881 9 N -1.020 6.020 10 S 2.605 3.395 11 O -0.959 6.959 12 O -0.960 6.960 13 C -0.574 4.574 14 C 0.054 3.946 15 C -0.169 4.169 16 C -0.182 4.182 17 C -0.507 4.507 18 H 0.078 0.922 19 C 0.076 3.924 20 N -0.890 5.890 21 Si 0.874 3.126 22 H -0.281 1.281 23 H -0.300 1.300 24 H -0.245 1.245 25 C 0.118 3.882 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.072 0.928 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.124 0.876 40 H 0.125 0.875 41 H 0.036 0.964 42 H 0.066 0.934 43 H 0.057 0.943 44 H 0.063 0.937 45 H 0.052 0.948 46 H 0.049 0.951 47 H 0.266 0.734 48 H 0.066 0.934 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.496 15.532 12.526 23.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.115 4.115 3 C -0.208 4.208 4 C -0.144 4.144 5 C -0.119 4.119 6 H 0.105 0.895 7 C -0.162 4.162 8 C -0.007 4.007 9 N -0.857 5.857 10 S 2.705 3.295 11 O -0.950 6.950 12 O -0.951 6.951 13 C -0.707 4.707 14 C 0.051 3.949 15 C -0.226 4.226 16 C -0.239 4.239 17 C -0.546 4.546 18 H 0.096 0.904 19 C -0.127 4.127 20 N -0.527 5.527 21 Si 0.705 3.295 22 H -0.208 1.208 23 H -0.229 1.229 24 H -0.171 1.171 25 C -0.008 4.008 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.142 0.858 40 H 0.143 0.857 41 H 0.055 0.945 42 H 0.085 0.915 43 H 0.076 0.924 44 H 0.082 0.918 45 H 0.071 0.929 46 H 0.068 0.932 47 H 0.076 0.924 48 H 0.084 0.916 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.681 15.964 12.112 23.195 hybrid contribution 0.576 -0.520 -0.135 0.788 sum -11.105 15.444 11.977 22.478 Atomic orbital electron populations 1.21848 0.95356 1.01746 1.01595 1.21117 0.95495 0.96390 0.98530 1.21909 1.01338 0.95957 1.01565 1.21615 0.93708 1.00976 0.98105 1.22449 0.95636 0.99323 0.94533 0.89533 1.22709 0.95931 0.99399 0.98163 1.21678 0.98314 1.01067 0.79621 1.58827 1.30193 1.79990 1.16642 1.05329 0.72471 0.78587 0.73156 1.93542 1.85298 1.66389 1.49746 1.93533 1.46725 1.86885 1.67957 1.30425 1.09639 1.20659 1.10019 1.18240 0.88308 0.98293 0.90063 1.22663 1.02303 0.97738 0.99922 1.22837 0.99046 1.00728 1.01245 1.20664 1.10056 0.91975 1.31889 0.90405 1.24971 0.98455 0.94837 0.94392 1.69926 1.35502 1.15024 1.32217 0.87436 0.84926 0.80456 0.76650 1.20833 1.22853 1.17059 1.22073 0.83802 0.97346 0.97532 0.92742 0.92668 0.92902 0.90998 0.93001 0.92334 0.92716 0.91406 0.91459 0.90364 0.90498 0.91230 0.91685 0.85787 0.85675 0.94490 0.91496 0.92365 0.91796 0.92929 0.93244 0.92417 0.91562 0.89952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.19 37.15 0.34 -0.54 16 2 C -0.10 -0.62 2.83 -90.62 -0.26 -0.87 16 3 C -0.15 -0.96 8.95 37.16 0.33 -0.63 16 4 C -0.11 -0.75 4.21 -26.73 -0.11 -0.87 16 5 C -0.10 -0.87 2.81 -88.47 -0.25 -1.12 16 6 H 0.09 0.77 6.55 -51.93 -0.34 0.43 16 7 C -0.12 -1.03 5.52 -24.90 -0.14 -1.16 16 8 C 0.12 1.35 6.90 -3.07 -0.02 1.33 16 9 N -1.02 -14.07 3.62 -111.42 -0.40 -14.48 16 10 S 2.60 46.74 4.69 -107.50 -0.50 46.24 16 11 O -0.96 -19.19 15.15 -57.54 -0.87 -20.06 16 12 O -0.96 -19.25 15.22 -57.54 -0.88 -20.13 16 13 C -0.57 -10.83 5.09 37.16 0.19 -10.64 16 14 C 0.05 1.25 0.52 -155.66 -0.08 1.17 16 15 C -0.17 -3.86 6.88 37.15 0.26 -3.60 16 16 C -0.18 -4.15 7.19 37.16 0.27 -3.89 16 17 C -0.51 -13.79 8.62 -34.44 -0.30 -14.09 16 18 H 0.08 2.24 7.99 -52.49 -0.42 1.83 16 19 C 0.08 2.16 5.32 -17.82 -0.09 2.07 16 20 N -0.89 -26.66 13.96 55.43 0.77 -25.89 16 21 Si 0.87 21.70 22.80 -169.99 -3.88 17.83 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 24 H -0.24 -5.71 4.59 56.52 0.26 -5.45 16 25 C 0.12 1.35 6.54 -2.53 -0.02 1.33 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.45 7.29 -51.93 -0.38 0.07 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.39 6.52 -51.93 -0.34 0.05 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.47 8.12 -51.93 -0.42 0.05 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.08 0.54 8.05 -51.93 -0.42 0.12 16 36 H 0.08 0.57 8.02 -51.93 -0.42 0.16 16 37 H 0.07 0.81 8.14 -51.92 -0.42 0.38 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.12 2.13 8.14 -51.93 -0.42 1.71 16 40 H 0.12 2.17 8.14 -51.92 -0.42 1.75 16 41 H 0.04 0.79 6.28 -51.93 -0.33 0.47 16 42 H 0.07 1.57 4.38 -51.93 -0.23 1.34 16 43 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 44 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 45 H 0.05 1.23 2.24 -51.93 -0.12 1.12 16 46 H 0.05 1.06 5.46 -51.93 -0.28 0.78 16 47 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 48 H 0.07 0.67 8.04 -51.93 -0.42 0.25 16 49 H 0.08 0.99 7.67 -51.93 -0.40 0.59 16 LS Contribution 367.40 15.07 5.54 5.54 Total: -1.00 -32.70 367.40 -8.95 -41.65 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -8.85 Total: 0.81 kcal Atomic # 6 Polarization: -31.62 SS G_CDS: 0.12 Total: -31.50 kcal Atomic # 7 Polarization: -40.73 SS G_CDS: 0.37 Total: -40.36 kcal Atomic # 8 Polarization: -38.44 SS G_CDS: -1.75 Total: -40.19 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -3.88 Total: 17.83 kcal Atomic # 16 Polarization: 46.74 SS G_CDS: -0.50 Total: 46.24 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.70 -8.95 -41.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451261800.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.587 kcal (2) G-P(sol) polarization free energy of solvation -32.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds