Wall clock time and date at job start Tue Mar 31 2020 11:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.47360 * 2 1 4 4 C 1.53004 * 109.47077 * 240.00420 * 2 1 3 5 5 C 1.53005 * 109.47159 * 184.22906 * 4 2 1 6 6 H 1.08999 * 110.88486 * 301.85763 * 5 4 2 7 7 C 1.55159 * 111.00484 * 65.73767 * 5 4 2 8 8 C 1.54322 * 102.94301 * 153.57473 * 7 5 4 9 9 N 1.47019 * 107.27002 * 337.81337 * 8 7 5 10 10 S 1.65602 * 125.65027 * 178.98768 * 9 8 7 11 11 O 1.42094 * 104.27910 * 206.04215 * 10 9 8 12 12 O 1.42101 * 104.27480 * 333.89791 * 10 9 8 13 13 C 1.81400 * 104.45026 * 89.96781 * 10 9 8 14 14 C 1.53007 * 109.46901 * 180.02562 * 13 10 9 15 15 C 1.52993 * 109.47013 * 299.99996 * 14 13 10 16 16 C 1.52998 * 109.47084 * 60.00194 * 14 13 10 17 17 C 1.50701 * 109.46885 * 180.02562 * 14 13 10 18 18 H 1.08000 * 120.00254 * 1.55091 * 17 14 13 19 19 C 1.37879 * 119.99808 * 181.55928 * 17 14 13 20 20 N 1.31510 * 119.99661 * 193.29216 * 19 17 14 21 21 Si 1.86799 * 120.00259 * 13.28712 * 19 17 14 22 22 H 1.48501 * 109.46650 * 86.97888 * 21 19 17 23 23 H 1.48496 * 109.47459 * 206.97841 * 21 19 17 24 24 H 1.48497 * 109.47153 * 326.98368 * 21 19 17 25 25 C 1.47428 * 108.70788 * 358.93335 * 9 8 7 26 26 H 1.08999 * 109.47535 * 55.26974 * 1 2 3 27 27 H 1.08999 * 109.46788 * 175.27094 * 1 2 3 28 28 H 1.09001 * 109.46901 * 295.26295 * 1 2 3 29 29 H 1.08996 * 109.47409 * 120.00286 * 2 1 3 30 30 H 1.09003 * 109.46705 * 59.99806 * 3 2 1 31 31 H 1.08996 * 109.47513 * 180.02562 * 3 2 1 32 32 H 1.09006 * 109.46994 * 300.00504 * 3 2 1 33 33 H 1.08994 * 109.46722 * 304.22600 * 4 2 1 34 34 H 1.08994 * 109.47187 * 64.23030 * 4 2 1 35 35 H 1.08996 * 110.71925 * 271.94519 * 7 5 4 36 36 H 1.09004 * 110.71692 * 35.21067 * 7 5 4 37 37 H 1.09008 * 109.88053 * 97.22205 * 8 7 5 38 38 H 1.08999 * 109.88486 * 218.39152 * 8 7 5 39 39 H 1.08997 * 109.47270 * 300.00043 * 13 10 9 40 40 H 1.08998 * 109.47120 * 60.00702 * 13 10 9 41 41 H 1.09007 * 109.47266 * 71.21589 * 15 14 13 42 42 H 1.09006 * 109.47125 * 191.21409 * 15 14 13 43 43 H 1.09002 * 109.47353 * 311.21238 * 15 14 13 44 44 H 1.08998 * 109.47175 * 59.99480 * 16 14 13 45 45 H 1.09000 * 109.47109 * 179.97438 * 16 14 13 46 46 H 1.09001 * 109.47343 * 299.99898 * 16 14 13 47 47 H 0.97008 * 120.00169 * 179.97438 * 20 19 17 48 48 H 1.08998 * 110.36991 * 265.29622 * 25 9 8 49 49 H 1.09001 * 110.36900 * 142.96688 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5663 -0.8140 -1.1973 6 1 4.0136 0.1774 -1.1249 7 6 4.0288 -1.7197 -0.0255 8 6 5.3983 -2.2400 -0.5105 9 7 5.4149 -2.1248 -1.9760 10 16 6.6804 -2.5351 -2.9622 11 8 6.5056 -1.7210 -4.1136 12 8 7.8278 -2.3979 -2.1352 13 6 6.3921 -4.2798 -3.3664 14 6 7.5089 -4.7820 -4.2839 15 6 7.5216 -3.9556 -5.5713 16 6 8.8560 -4.6391 -3.5727 17 6 7.2691 -6.2313 -4.6202 18 1 6.3932 -6.7361 -4.2401 19 6 8.1680 -6.9129 -5.4130 20 7 7.8419 -8.0808 -5.9221 21 14 9.8488 -6.1774 -5.7640 22 1 10.7924 -6.5612 -4.6835 23 1 10.3511 -6.6887 -7.0645 24 1 9.7391 -4.6977 -5.8229 25 6 4.1178 -1.5848 -2.4226 26 1 -0.3634 0.5855 -0.8445 27 1 -0.3633 -1.0242 -0.0847 28 1 -0.3633 0.4386 0.9294 29 1 1.8933 -0.5138 0.8899 30 1 1.6766 1.9563 0.8900 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6161 -1.7246 -1.2880 34 1 1.7398 -0.1654 -2.1376 35 1 4.1390 -1.1391 0.8904 36 1 3.3326 -2.5454 0.1217 37 1 6.1976 -1.6350 -0.0821 38 1 5.5230 -3.2829 -0.2191 39 1 6.3835 -4.8687 -2.4493 40 1 5.4322 -4.3817 -3.8727 41 1 7.8887 -2.9521 -5.3554 42 1 8.1749 -4.4319 -6.3024 43 1 6.5104 -3.8938 -5.9735 44 1 8.8469 -5.2279 -2.6555 45 1 9.6516 -4.9973 -4.2261 46 1 9.0293 -3.5908 -3.3298 47 1 8.4741 -8.5602 -6.4802 48 1 3.4428 -2.3960 -2.6957 49 1 4.2585 -0.9075 -3.2649 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451261800.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:28 Heat of formation + Delta-G solvation = -97.602333 kcal Electronic energy + Delta-G solvation = -26276.618358 eV Core-core repulsion = 22750.910235 eV Total energy + Delta-G solvation = -3525.708124 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.94877 -38.53956 -38.20327 -37.01483 -36.83335 -34.07027 -32.20865 -30.32931 -29.03669 -28.18983 -27.93202 -27.13411 -26.62148 -23.29632 -21.90160 -21.54321 -20.36519 -19.76260 -18.89078 -18.17088 -17.50053 -17.32966 -16.94565 -16.52572 -15.62966 -15.33758 -15.23383 -15.03113 -14.84151 -14.69500 -14.50178 -14.27399 -14.17746 -14.10018 -13.67842 -13.61994 -13.27142 -13.14837 -12.98304 -12.83174 -12.79413 -12.67087 -12.61284 -12.47082 -12.26949 -12.04623 -11.92381 -11.90064 -11.80510 -11.73789 -11.32130 -11.21979 -11.13552 -10.98719 -10.71081 -10.52802 -9.88712 -8.37089 -6.37549 -0.74917 1.28145 1.33313 1.41030 1.72801 2.27270 2.79662 2.97149 3.07100 3.53681 3.68571 3.75403 3.89028 4.02140 4.18040 4.20248 4.22022 4.32771 4.44044 4.46123 4.55055 4.57143 4.61610 4.65475 4.67034 4.72797 4.83555 4.89072 4.89105 4.93007 4.98210 5.04346 5.06790 5.10538 5.14003 5.19378 5.23964 5.24579 5.33718 5.40147 5.44533 5.49217 5.53430 5.59609 5.61385 5.64402 6.23623 6.65360 7.27129 8.78855 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.029314 B = 0.003201 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.930419 B = 8744.531720 C = 9035.526757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.094 4.094 3 C -0.151 4.151 4 C -0.102 4.102 5 C -0.092 4.092 6 H 0.085 0.915 7 C -0.114 4.114 8 C 0.104 3.896 9 N -1.017 6.017 10 S 2.627 3.373 11 O -0.982 6.982 12 O -0.982 6.982 13 C -0.583 4.583 14 C 0.044 3.956 15 C -0.173 4.173 16 C -0.187 4.187 17 C -0.504 4.504 18 H 0.049 0.951 19 C 0.026 3.974 20 N -0.936 5.936 21 Si 0.917 3.083 22 H -0.275 1.275 23 H -0.303 1.303 24 H -0.221 1.221 25 C 0.105 3.895 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.077 0.923 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.137 0.863 40 H 0.136 0.864 41 H 0.049 0.951 42 H 0.057 0.943 43 H 0.064 0.936 44 H 0.070 0.930 45 H 0.046 0.954 46 H 0.062 0.938 47 H 0.267 0.733 48 H 0.080 0.920 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.241 17.293 14.074 25.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.113 4.113 3 C -0.208 4.208 4 C -0.140 4.140 5 C -0.112 4.112 6 H 0.103 0.897 7 C -0.153 4.153 8 C -0.020 4.020 9 N -0.856 5.856 10 S 2.726 3.274 11 O -0.972 6.972 12 O -0.972 6.972 13 C -0.714 4.714 14 C 0.042 3.958 15 C -0.231 4.231 16 C -0.244 4.244 17 C -0.543 4.543 18 H 0.067 0.933 19 C -0.173 4.173 20 N -0.575 5.575 21 Si 0.746 3.254 22 H -0.202 1.202 23 H -0.232 1.232 24 H -0.145 1.145 25 C -0.019 4.019 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.095 0.905 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.116 0.884 36 H 0.109 0.891 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.155 0.845 40 H 0.154 0.846 41 H 0.068 0.932 42 H 0.076 0.924 43 H 0.083 0.917 44 H 0.089 0.911 45 H 0.064 0.936 46 H 0.081 0.919 47 H 0.076 0.924 48 H 0.098 0.902 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.424 17.731 13.663 25.601 hybrid contribution 0.674 -1.048 -0.546 1.360 sum -11.750 16.682 13.117 24.257 Atomic orbital electron populations 1.21840 0.95023 1.01870 1.01772 1.21100 0.95733 0.96206 0.98227 1.21914 1.01120 0.96104 1.01697 1.21593 0.92366 1.01440 0.98597 1.22423 0.96600 0.98915 0.93300 0.89659 1.22732 0.94189 0.99869 0.98501 1.22006 1.00204 1.01914 0.77900 1.58501 1.30250 1.79368 1.17506 1.04360 0.72680 0.77576 0.72819 1.93509 1.85877 1.66523 1.51289 1.93498 1.48562 1.86853 1.68313 1.30442 1.08571 1.22480 1.09917 1.18219 0.90245 0.95971 0.91373 1.22675 1.02711 0.98197 0.99502 1.22864 0.98377 1.01762 1.01375 1.20928 1.08625 0.94052 1.30695 0.93274 1.25681 1.01763 0.95202 0.94635 1.70042 1.36829 1.16779 1.33870 0.86702 0.80992 0.81299 0.76384 1.20202 1.23203 1.14527 1.22381 0.82919 0.98035 0.98609 0.92911 0.92519 0.92495 0.90463 0.92546 0.92644 0.92982 0.90904 0.91496 0.88393 0.89139 0.91596 0.90824 0.84462 0.84592 0.93221 0.92422 0.91689 0.91124 0.93592 0.91887 0.92407 0.90186 0.90901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.19 71.98 0.66 -0.75 16 2 C -0.09 -0.95 2.83 -10.79 -0.03 -0.98 16 3 C -0.15 -1.60 8.95 71.98 0.64 -0.95 16 4 C -0.10 -1.18 4.21 30.60 0.13 -1.06 16 5 C -0.09 -1.38 2.81 -9.40 -0.03 -1.40 16 6 H 0.09 1.32 6.55 -2.39 -0.02 1.30 16 7 C -0.11 -1.53 5.52 31.78 0.18 -1.36 16 8 C 0.10 2.12 6.90 86.73 0.60 2.72 16 9 N -1.02 -26.10 3.62 -506.42 -1.83 -27.93 16 10 S 2.63 90.14 4.69 -56.49 -0.26 89.87 16 11 O -0.98 -37.92 15.15 -127.65 -1.93 -39.86 16 12 O -0.98 -37.73 15.22 -127.65 -1.94 -39.67 16 13 C -0.58 -21.26 5.09 71.98 0.37 -20.89 16 14 C 0.04 2.02 0.52 -52.93 -0.03 2.00 16 15 C -0.17 -7.71 6.88 71.98 0.50 -7.22 16 16 C -0.19 -8.25 7.19 71.98 0.52 -7.73 16 17 C -0.50 -27.62 8.62 25.60 0.22 -27.40 16 18 H 0.05 2.90 7.99 -2.91 -0.02 2.88 16 19 C 0.03 1.48 5.32 84.66 0.45 1.93 16 20 N -0.94 -57.33 13.96 21.45 0.30 -57.03 16 21 Si 0.92 44.35 22.80 68.60 1.56 45.91 16 22 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 23 H -0.30 -14.71 7.11 99.48 0.71 -14.01 16 24 H -0.22 -9.78 4.59 99.48 0.46 -9.32 16 25 C 0.11 2.19 6.54 86.85 0.57 2.76 16 26 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.08 0.72 7.29 -2.39 -0.02 0.70 16 30 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.05 0.62 6.52 -2.39 -0.02 0.60 16 32 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 33 H 0.07 0.80 8.12 -2.39 -0.02 0.78 16 34 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.10 0.98 8.05 -2.39 -0.02 0.96 16 36 H 0.09 1.01 8.02 -2.39 -0.02 0.99 16 37 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 38 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.14 4.55 8.14 -2.39 -0.02 4.53 16 40 H 0.14 4.57 8.14 -2.39 -0.02 4.55 16 41 H 0.05 2.06 6.28 -2.38 -0.01 2.04 16 42 H 0.06 2.63 4.38 -2.38 -0.01 2.62 16 43 H 0.06 2.73 8.10 -2.39 -0.02 2.71 16 44 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 45 H 0.05 2.07 2.24 -2.39 -0.01 2.06 16 46 H 0.06 2.59 5.46 -2.39 -0.01 2.58 16 47 H 0.27 15.42 8.31 -92.70 -0.77 14.65 16 48 H 0.08 1.44 8.04 -2.39 -0.02 1.42 16 49 H 0.07 1.66 7.67 -2.39 -0.02 1.64 16 Total: -1.00 -69.90 367.40 1.29 -68.61 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: 0.66 Total: 20.43 kcal Atomic # 6 Polarization: -65.08 SS G_CDS: 4.74 Total: -60.33 kcal Atomic # 7 Polarization: -83.43 SS G_CDS: -1.53 Total: -84.96 kcal Atomic # 8 Polarization: -75.65 SS G_CDS: -3.88 Total: -79.53 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 1.56 Total: 45.91 kcal Atomic # 16 Polarization: 90.14 SS G_CDS: -0.26 Total: 89.87 kcal Total: -69.90 1.29 -68.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451261800.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.990 kcal (2) G-P(sol) polarization free energy of solvation -69.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds