Wall clock time and date at job start Tue Mar 31 2020 11:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52994 * 109.47746 * 2 1 4 4 C 1.52999 * 109.47502 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.46972 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.46811 * 55.00331 * 5 4 3 7 7 C 1.53001 * 109.46688 * 174.99612 * 5 4 3 8 8 C 1.53004 * 109.47130 * 178.69419 * 7 5 4 9 9 C 1.53000 * 109.47303 * 180.79529 * 8 7 5 10 10 N 1.46493 * 109.47267 * 295.00079 * 5 4 3 11 11 S 1.65595 * 120.00472 * 112.28773 * 10 5 4 12 12 O 1.42103 * 104.27490 * 304.51949 * 11 10 5 13 13 O 1.42096 * 104.28081 * 176.66088 * 11 10 5 14 14 C 1.81397 * 104.44880 * 60.58749 * 11 10 5 15 15 C 1.53002 * 109.47344 * 183.79089 * 14 11 10 16 16 C 1.50696 * 115.54895 * 305.45833 * 15 14 11 17 17 H 1.08008 * 120.00294 * 95.17755 * 16 15 14 18 18 C 1.37878 * 120.00147 * 274.90292 * 16 15 14 19 19 N 1.31511 * 119.99705 * 355.48309 * 18 16 15 20 20 Si 1.86803 * 120.00199 * 175.48290 * 18 16 15 21 21 H 1.48502 * 109.47014 * 90.00196 * 20 18 16 22 22 H 1.48501 * 109.46714 * 209.99952 * 20 18 16 23 23 H 1.48489 * 109.47089 * 330.00084 * 20 18 16 24 24 C 1.53003 * 117.49671 * 91.12135 * 15 14 11 25 25 C 1.53004 * 117.50152 * 159.78136 * 15 14 11 26 26 H 1.09000 * 109.47444 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47121 * 300.00203 * 1 2 3 28 28 H 1.08998 * 109.47122 * 59.99813 * 1 2 3 29 29 H 1.09007 * 109.47121 * 239.99797 * 2 1 3 30 30 H 1.08998 * 109.47122 * 120.00187 * 2 1 3 31 31 H 1.09007 * 109.46977 * 59.99708 * 3 2 1 32 32 H 1.08998 * 109.46963 * 300.00284 * 3 2 1 33 33 H 1.08998 * 109.47382 * 59.99888 * 4 3 2 34 34 H 1.08998 * 109.46789 * 299.99501 * 4 3 2 35 35 H 1.08997 * 109.47713 * 298.68963 * 7 5 4 36 36 H 1.09002 * 109.47409 * 58.69689 * 7 5 4 37 37 H 1.09001 * 109.46944 * 300.79457 * 8 7 5 38 38 H 1.09004 * 109.47169 * 60.79235 * 8 7 5 39 39 H 1.09001 * 109.47062 * 299.99856 * 9 8 7 40 40 H 1.08995 * 109.46695 * 59.99944 * 9 8 7 41 41 H 1.09008 * 109.46828 * 180.02562 * 9 8 7 42 42 H 0.97009 * 119.99741 * 292.27976 * 10 5 4 43 43 H 1.08997 * 109.47560 * 63.79391 * 14 11 10 44 44 H 1.09001 * 109.47818 * 303.79213 * 14 11 10 45 45 H 0.97005 * 120.00056 * 185.00755 * 19 18 16 46 46 H 1.08998 * 117.49901 * 214.99993 * 24 15 14 47 47 H 1.08996 * 117.49817 * 0.03031 * 24 15 14 48 48 H 1.08994 * 117.49745 * 359.97438 * 25 15 14 49 49 H 1.08999 * 117.49569 * 144.97733 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 -0.0006 5 6 4.0801 2.8848 -0.0013 6 1 3.6459 3.4241 0.8406 7 6 5.6050 2.8866 0.1239 8 6 6.1178 4.3277 0.0905 9 6 7.6442 4.3285 0.1958 10 7 3.6920 3.5395 -1.2530 11 16 2.5824 4.7685 -1.2354 12 8 1.4471 4.2063 -0.5916 13 8 2.5181 5.2021 -2.5871 14 6 3.3381 6.0457 -0.1924 15 6 2.3588 7.2085 -0.0196 16 6 1.8356 7.8129 -1.2971 17 1 0.8903 7.4837 -1.7028 18 6 2.5610 8.7902 -1.9450 19 7 3.6642 9.2581 -1.4033 20 14 1.9767 9.4495 -3.5923 21 1 1.0796 10.6119 -3.3701 22 1 3.1487 9.8757 -4.3986 23 1 1.2375 8.3852 -4.3174 24 6 1.4099 7.1606 1.1797 25 6 2.5798 8.1478 1.1678 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6768 1.9562 -0.8899 33 1 3.9330 0.9286 -0.8908 34 1 3.9337 0.9284 0.8892 35 1 5.8928 2.4204 1.0661 36 1 6.0383 2.3275 -0.7054 37 1 5.8179 4.7985 -0.8457 38 1 5.6956 4.8831 0.9280 39 1 7.9441 3.8577 1.1320 40 1 8.0663 3.7731 -0.6417 41 1 8.0094 5.3553 0.1724 42 1 4.0852 3.2530 -2.0923 43 1 4.2515 6.4072 -0.6648 44 1 3.5767 5.6236 0.7838 45 1 4.1353 9.9955 -1.8221 46 1 0.4073 7.5664 1.0447 47 1 1.4837 6.3011 1.8458 48 1 3.4225 7.9372 1.8261 49 1 2.3471 9.2031 1.0247 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451283059.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:30 Heat of formation + Delta-G solvation = -90.209290 kcal Electronic energy + Delta-G solvation = -26811.422266 eV Core-core repulsion = 23286.034729 eV Total energy + Delta-G solvation = -3525.387537 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -38.02018 -36.71683 -36.08954 -35.06882 -34.87161 -33.03392 -32.00850 -30.25306 -28.22421 -27.84158 -25.44629 -24.33896 -21.63683 -21.15686 -20.97801 -20.56092 -19.70991 -18.66826 -16.93640 -16.39123 -16.06543 -15.33062 -15.09425 -14.86395 -14.57587 -14.28169 -14.06768 -13.90658 -13.69213 -13.37109 -13.12630 -12.89479 -12.55099 -12.15476 -12.07618 -11.80838 -11.62214 -11.56656 -11.31280 -11.21525 -11.10805 -11.04500 -10.95094 -10.88793 -10.82243 -10.60636 -10.58839 -10.52055 -10.45868 -10.38529 -10.29024 -10.03580 -9.62014 -9.12454 -8.98956 -8.50222 -8.06527 -6.11073 -4.24188 1.16561 3.32077 3.38717 3.50626 3.53450 4.41390 4.52432 4.63833 4.89439 5.00962 5.07402 5.09574 5.13751 5.17771 5.21927 5.25444 5.29247 5.43787 5.47122 5.56175 5.61986 5.72452 5.82404 5.84386 5.89678 5.90835 5.91479 5.99845 6.06843 6.09595 6.16694 6.18142 6.27222 6.29926 6.36575 6.38814 6.41489 6.56810 6.64896 6.71519 6.73570 7.01461 7.23125 7.37481 7.47414 7.81694 8.21232 8.81766 9.49258 10.95232 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012463 B = 0.005155 C = 0.004380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.119430 B = 5430.081452 C = 6391.738599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.124 4.124 4 C -0.127 4.127 5 C 0.153 3.847 6 H 0.083 0.917 7 C -0.127 4.127 8 C -0.135 4.135 9 C -0.150 4.150 10 N -1.126 6.126 11 S 2.609 3.391 12 O -0.968 6.968 13 O -0.951 6.951 14 C -0.556 4.556 15 C 0.042 3.958 16 C -0.520 4.520 17 H 0.067 0.933 18 C 0.086 3.914 19 N -0.873 5.873 20 Si 0.889 3.111 21 H -0.280 1.280 22 H -0.283 1.283 23 H -0.264 1.264 24 C -0.207 4.207 25 C -0.135 4.135 26 H 0.047 0.953 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.050 0.950 40 H 0.051 0.949 41 H 0.055 0.945 42 H 0.410 0.590 43 H 0.129 0.871 44 H 0.096 0.904 45 H 0.262 0.738 46 H 0.084 0.916 47 H 0.070 0.930 48 H 0.063 0.937 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.867 -14.701 5.041 16.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.161 4.161 4 C -0.166 4.166 5 C 0.045 3.955 6 H 0.101 0.899 7 C -0.166 4.166 8 C -0.172 4.172 9 C -0.207 4.207 10 N -0.882 5.882 11 S 2.706 3.294 12 O -0.958 6.958 13 O -0.941 6.941 14 C -0.689 4.689 15 C 0.040 3.960 16 C -0.557 4.557 17 H 0.085 0.915 18 C -0.120 4.120 19 N -0.509 5.509 20 Si 0.715 3.285 21 H -0.206 1.206 22 H -0.209 1.209 23 H -0.188 1.188 24 C -0.244 4.244 25 C -0.174 4.174 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.243 0.757 43 H 0.147 0.853 44 H 0.114 0.886 45 H 0.072 0.928 46 H 0.103 0.897 47 H 0.089 0.911 48 H 0.082 0.918 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.141 -14.599 4.680 15.881 hybrid contribution 0.666 0.615 -0.752 1.178 sum 4.806 -13.984 3.929 15.300 Atomic orbital electron populations 1.21766 0.96068 1.00810 1.02375 1.21523 0.95915 0.97411 1.01114 1.21703 0.94269 0.95913 1.04263 1.21973 0.96740 0.95913 1.01993 1.20772 0.94594 0.94031 0.86092 0.89868 1.21995 0.94756 0.97552 1.02336 1.21681 0.95874 0.96588 1.03067 1.21746 0.96015 1.01759 1.01197 1.56089 1.64615 1.53454 1.14011 1.05029 0.74308 0.74131 0.75932 1.93507 1.47669 1.76278 1.78375 1.93552 1.85549 1.81544 1.33430 1.30054 1.12217 1.14147 1.12447 1.18249 0.94101 0.93303 0.90357 1.20525 1.06418 1.23335 1.05426 0.91509 1.24919 0.94055 0.95709 0.97293 1.69997 1.16504 1.24839 1.39511 0.86607 0.78621 0.79173 0.84060 1.20562 1.20903 1.18810 1.23153 0.95971 1.01819 1.03481 1.22489 0.96904 0.96798 1.01204 0.93384 0.92630 0.92546 0.92617 0.92639 0.91390 0.90548 0.91726 0.91448 0.91121 0.91444 0.91204 0.91589 0.93079 0.92994 0.92612 0.75744 0.85296 0.88588 0.92793 0.89716 0.91136 0.91806 0.89337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.91 37.15 0.37 -1.35 16 2 C -0.12 -1.34 5.93 -26.74 -0.16 -1.50 16 3 C -0.12 -1.62 4.11 -26.73 -0.11 -1.73 16 4 C -0.13 -1.37 4.89 -26.73 -0.13 -1.50 16 5 C 0.15 1.83 2.18 -67.93 -0.15 1.68 16 6 H 0.08 1.03 7.10 -51.93 -0.37 0.66 16 7 C -0.13 -1.28 4.94 -26.73 -0.13 -1.41 16 8 C -0.13 -1.58 5.15 -26.73 -0.14 -1.72 16 9 C -0.15 -1.56 9.91 37.16 0.37 -1.19 16 10 N -1.13 -16.16 3.89 -4.89 -0.02 -16.18 16 11 S 2.61 51.91 4.87 -107.50 -0.52 51.38 16 12 O -0.97 -20.47 15.40 -57.54 -0.89 -21.36 16 13 O -0.95 -22.92 17.27 -57.54 -0.99 -23.91 16 14 C -0.56 -11.32 5.02 37.16 0.19 -11.13 16 15 C 0.04 1.01 1.55 -155.66 -0.24 0.77 16 16 C -0.52 -14.25 7.46 -34.44 -0.26 -14.51 16 17 H 0.07 1.88 7.82 -52.48 -0.41 1.47 16 18 C 0.09 2.35 5.43 -17.82 -0.10 2.26 16 19 N -0.87 -24.08 12.65 55.43 0.70 -23.38 16 20 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.26 -6.64 7.11 56.52 0.40 -6.24 16 24 C -0.21 -4.49 9.93 -26.69 -0.26 -4.76 16 25 C -0.13 -3.06 9.17 -26.69 -0.24 -3.31 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.96 8.14 -51.92 -0.42 0.53 16 32 H 0.08 1.19 6.30 -51.93 -0.33 0.86 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.92 6.89 -51.93 -0.36 0.57 16 38 H 0.07 0.80 7.49 -51.93 -0.39 0.41 16 39 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.05 0.61 8.14 -51.92 -0.42 0.18 16 42 H 0.41 5.19 8.93 -34.47 -0.31 4.88 16 43 H 0.13 2.71 7.60 -51.93 -0.39 2.32 16 44 H 0.10 1.63 6.83 -51.92 -0.35 1.27 16 45 H 0.26 6.91 8.32 -40.82 -0.34 6.57 16 46 H 0.08 1.84 8.14 -51.93 -0.42 1.41 16 47 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 48 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 49 H 0.09 2.16 8.14 -51.93 -0.42 1.74 16 LS Contribution 396.24 15.07 5.97 5.97 Total: -1.00 -31.56 396.24 -11.00 -42.56 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -9.23 Total: 7.48 kcal Atomic # 6 Polarization: -38.39 SS G_CDS: -1.00 Total: -39.39 kcal Atomic # 7 Polarization: -40.24 SS G_CDS: 0.68 Total: -39.55 kcal Atomic # 8 Polarization: -43.39 SS G_CDS: -1.88 Total: -45.27 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 16 Polarization: 51.91 SS G_CDS: -0.52 Total: 51.38 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.56 -11.00 -42.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451283059.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.645 kcal (2) G-P(sol) polarization free energy of solvation -31.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds