Wall clock time and date at job start Tue Mar 31 2020 11:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52994 * 109.47746 * 2 1 4 4 C 1.52999 * 109.47502 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.46972 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.46811 * 55.00331 * 5 4 3 7 7 C 1.53001 * 109.46688 * 174.99612 * 5 4 3 8 8 C 1.53004 * 109.47130 * 178.69419 * 7 5 4 9 9 C 1.53000 * 109.47303 * 180.79529 * 8 7 5 10 10 N 1.46493 * 109.47267 * 295.00079 * 5 4 3 11 11 S 1.65595 * 120.00472 * 112.28773 * 10 5 4 12 12 O 1.42103 * 104.27490 * 304.51949 * 11 10 5 13 13 O 1.42096 * 104.28081 * 176.66088 * 11 10 5 14 14 C 1.81397 * 104.44880 * 60.58749 * 11 10 5 15 15 C 1.53002 * 109.47344 * 183.79089 * 14 11 10 16 16 C 1.50696 * 115.54895 * 305.45833 * 15 14 11 17 17 H 1.08008 * 120.00294 * 95.17755 * 16 15 14 18 18 C 1.37878 * 120.00147 * 274.90292 * 16 15 14 19 19 N 1.31511 * 119.99705 * 355.48309 * 18 16 15 20 20 Si 1.86803 * 120.00199 * 175.48290 * 18 16 15 21 21 H 1.48502 * 109.47014 * 90.00196 * 20 18 16 22 22 H 1.48501 * 109.46714 * 209.99952 * 20 18 16 23 23 H 1.48489 * 109.47089 * 330.00084 * 20 18 16 24 24 C 1.53003 * 117.49671 * 91.12135 * 15 14 11 25 25 C 1.53004 * 117.50152 * 159.78136 * 15 14 11 26 26 H 1.09000 * 109.47444 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47121 * 300.00203 * 1 2 3 28 28 H 1.08998 * 109.47122 * 59.99813 * 1 2 3 29 29 H 1.09007 * 109.47121 * 239.99797 * 2 1 3 30 30 H 1.08998 * 109.47122 * 120.00187 * 2 1 3 31 31 H 1.09007 * 109.46977 * 59.99708 * 3 2 1 32 32 H 1.08998 * 109.46963 * 300.00284 * 3 2 1 33 33 H 1.08998 * 109.47382 * 59.99888 * 4 3 2 34 34 H 1.08998 * 109.46789 * 299.99501 * 4 3 2 35 35 H 1.08997 * 109.47713 * 298.68963 * 7 5 4 36 36 H 1.09002 * 109.47409 * 58.69689 * 7 5 4 37 37 H 1.09001 * 109.46944 * 300.79457 * 8 7 5 38 38 H 1.09004 * 109.47169 * 60.79235 * 8 7 5 39 39 H 1.09001 * 109.47062 * 299.99856 * 9 8 7 40 40 H 1.08995 * 109.46695 * 59.99944 * 9 8 7 41 41 H 1.09008 * 109.46828 * 180.02562 * 9 8 7 42 42 H 0.97009 * 119.99741 * 292.27976 * 10 5 4 43 43 H 1.08997 * 109.47560 * 63.79391 * 14 11 10 44 44 H 1.09001 * 109.47818 * 303.79213 * 14 11 10 45 45 H 0.97005 * 120.00056 * 185.00755 * 19 18 16 46 46 H 1.08998 * 117.49901 * 214.99993 * 24 15 14 47 47 H 1.08996 * 117.49817 * 0.03031 * 24 15 14 48 48 H 1.08994 * 117.49745 * 359.97438 * 25 15 14 49 49 H 1.08999 * 117.49569 * 144.97733 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 -0.0006 5 6 4.0801 2.8848 -0.0013 6 1 3.6459 3.4241 0.8406 7 6 5.6050 2.8866 0.1239 8 6 6.1178 4.3277 0.0905 9 6 7.6442 4.3285 0.1958 10 7 3.6920 3.5395 -1.2530 11 16 2.5824 4.7685 -1.2354 12 8 1.4471 4.2063 -0.5916 13 8 2.5181 5.2021 -2.5871 14 6 3.3381 6.0457 -0.1924 15 6 2.3588 7.2085 -0.0196 16 6 1.8356 7.8129 -1.2971 17 1 0.8903 7.4837 -1.7028 18 6 2.5610 8.7902 -1.9450 19 7 3.6642 9.2581 -1.4033 20 14 1.9767 9.4495 -3.5923 21 1 1.0796 10.6119 -3.3701 22 1 3.1487 9.8757 -4.3986 23 1 1.2375 8.3852 -4.3174 24 6 1.4099 7.1606 1.1797 25 6 2.5798 8.1478 1.1678 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6768 1.9562 -0.8899 33 1 3.9330 0.9286 -0.8908 34 1 3.9337 0.9284 0.8892 35 1 5.8928 2.4204 1.0661 36 1 6.0383 2.3275 -0.7054 37 1 5.8179 4.7985 -0.8457 38 1 5.6956 4.8831 0.9280 39 1 7.9441 3.8577 1.1320 40 1 8.0663 3.7731 -0.6417 41 1 8.0094 5.3553 0.1724 42 1 4.0852 3.2530 -2.0923 43 1 4.2515 6.4072 -0.6648 44 1 3.5767 5.6236 0.7838 45 1 4.1353 9.9955 -1.8221 46 1 0.4073 7.5664 1.0447 47 1 1.4837 6.3011 1.8458 48 1 3.4225 7.9372 1.8261 49 1 2.3471 9.2031 1.0247 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451283059.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:29 Heat of formation + Delta-G solvation = -109.104765 kcal Electronic energy + Delta-G solvation = -26812.241636 eV Core-core repulsion = 23286.034729 eV Total energy + Delta-G solvation = -3526.206906 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.02164 -38.53400 -37.75887 -36.68864 -35.85016 -34.07985 -34.01118 -31.26946 -29.88747 -28.73607 -27.49824 -25.22449 -22.95101 -22.51099 -21.99365 -21.55654 -21.34373 -20.24363 -18.49220 -18.21151 -17.24864 -16.89012 -16.61970 -16.31256 -15.89725 -15.58066 -15.46641 -15.10628 -14.85137 -14.76962 -14.23286 -13.92791 -13.77866 -13.71151 -13.43527 -13.23107 -13.04198 -12.87413 -12.82005 -12.79229 -12.54136 -12.49562 -12.45176 -12.26845 -12.15803 -11.93659 -11.91921 -11.69668 -11.61309 -11.53504 -11.42370 -11.36875 -11.24571 -10.96211 -10.50195 -10.24885 -9.83797 -8.19994 -6.36174 -0.40935 1.33530 1.37616 1.50185 2.14364 2.38637 3.05065 3.07377 3.36455 3.57989 3.63907 4.00454 4.10716 4.11956 4.19770 4.26933 4.29594 4.34929 4.39186 4.52204 4.54633 4.61987 4.62652 4.74886 4.77754 4.85690 4.95578 4.99066 4.99330 5.02144 5.06744 5.10688 5.21145 5.22297 5.23207 5.27661 5.36705 5.40082 5.43962 5.47699 5.55008 5.63044 5.64601 5.70505 5.71101 6.21251 6.27531 6.70431 7.37788 8.85733 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012463 B = 0.005155 C = 0.004380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.119430 B = 5430.081452 C = 6391.738599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.119 4.119 3 C -0.129 4.129 4 C -0.121 4.121 5 C 0.143 3.857 6 H 0.080 0.920 7 C -0.118 4.118 8 C -0.142 4.142 9 C -0.148 4.148 10 N -1.110 6.110 11 S 2.623 3.377 12 O -0.985 6.985 13 O -1.002 7.002 14 C -0.550 4.550 15 C 0.009 3.991 16 C -0.536 4.536 17 H 0.044 0.956 18 C 0.048 3.952 19 N -0.889 5.889 20 Si 0.926 3.074 21 H -0.266 1.266 22 H -0.273 1.273 23 H -0.279 1.279 24 C -0.193 4.193 25 C -0.132 4.132 26 H 0.066 0.934 27 H 0.048 0.952 28 H 0.038 0.962 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.052 0.948 32 H 0.044 0.956 33 H 0.077 0.923 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.081 0.919 37 H 0.047 0.953 38 H 0.059 0.941 39 H 0.067 0.933 40 H 0.059 0.941 41 H 0.043 0.957 42 H 0.419 0.581 43 H 0.119 0.881 44 H 0.131 0.869 45 H 0.265 0.735 46 H 0.078 0.922 47 H 0.100 0.900 48 H 0.086 0.914 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.361 -16.865 6.407 19.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.156 4.156 3 C -0.166 4.166 4 C -0.160 4.160 5 C 0.036 3.964 6 H 0.098 0.902 7 C -0.156 4.156 8 C -0.180 4.180 9 C -0.205 4.205 10 N -0.870 5.870 11 S 2.719 3.281 12 O -0.975 6.975 13 O -0.992 6.992 14 C -0.682 4.682 15 C 0.007 3.993 16 C -0.573 4.573 17 H 0.063 0.937 18 C -0.155 4.155 19 N -0.525 5.525 20 Si 0.752 3.248 21 H -0.191 1.191 22 H -0.198 1.198 23 H -0.204 1.204 24 C -0.231 4.231 25 C -0.171 4.171 26 H 0.085 0.915 27 H 0.068 0.932 28 H 0.057 0.943 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.095 0.905 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.099 0.901 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.062 0.938 42 H 0.254 0.746 43 H 0.137 0.863 44 H 0.149 0.851 45 H 0.074 0.926 46 H 0.096 0.904 47 H 0.118 0.882 48 H 0.104 0.896 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.632 -16.750 6.046 18.677 hybrid contribution 0.176 1.232 -1.134 1.684 sum 5.808 -15.518 4.912 17.282 Atomic orbital electron populations 1.21807 0.96708 1.01681 1.01213 1.21516 0.95413 0.96217 1.02499 1.21705 0.96173 0.96820 1.01948 1.21965 0.94833 0.95192 1.04028 1.21122 0.96249 0.94567 0.84420 0.90164 1.21952 0.92741 0.96625 1.04327 1.21729 0.96962 0.97641 1.01639 1.21729 0.94942 1.01408 1.02449 1.55592 1.63787 1.51841 1.15775 1.04306 0.74711 0.74448 0.74602 1.93487 1.49157 1.76479 1.78336 1.93478 1.86647 1.82847 1.36193 1.29909 1.10655 1.13166 1.14467 1.18384 0.96164 0.95088 0.89671 1.20688 1.05812 1.23710 1.07118 0.93737 1.25431 0.94478 0.96200 0.99419 1.70031 1.16925 1.25245 1.40303 0.86028 0.78676 0.78663 0.81475 1.19141 1.19825 1.20393 1.23208 0.95225 1.02239 1.02386 1.22411 0.98164 0.95513 1.00976 0.91497 0.93237 0.94314 0.91730 0.90598 0.92892 0.93765 0.90470 0.88496 0.88461 0.90084 0.93402 0.92256 0.91411 0.92205 0.93799 0.74558 0.86264 0.85131 0.92581 0.90353 0.88213 0.89601 0.91695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.35 9.91 71.98 0.71 -2.64 16 2 C -0.12 -2.35 5.93 30.59 0.18 -2.17 16 3 C -0.13 -3.17 4.11 30.59 0.13 -3.05 16 4 C -0.12 -2.22 4.89 30.59 0.15 -2.07 16 5 C 0.14 3.04 2.18 44.99 0.10 3.14 16 6 H 0.08 1.77 7.10 -2.39 -0.02 1.76 16 7 C -0.12 -1.93 4.94 30.60 0.15 -1.78 16 8 C -0.14 -3.03 5.15 30.60 0.16 -2.88 16 9 C -0.15 -2.73 9.91 71.98 0.71 -2.01 16 10 N -1.11 -30.79 3.89 -169.39 -0.66 -31.45 16 11 S 2.62 105.31 4.87 -56.49 -0.28 105.04 16 12 O -0.98 -42.04 15.40 -127.65 -1.97 -44.00 16 13 O -1.00 -49.93 17.27 -127.65 -2.20 -52.13 16 14 C -0.55 -22.17 5.02 71.98 0.36 -21.81 16 15 C 0.01 0.43 1.55 -52.93 -0.08 0.35 16 16 C -0.54 -30.14 7.46 25.60 0.19 -29.95 16 17 H 0.04 2.62 7.82 -2.91 -0.02 2.60 16 18 C 0.05 2.69 5.43 84.66 0.46 3.15 16 19 N -0.89 -49.57 12.65 21.45 0.27 -49.29 16 20 Si 0.93 45.40 29.54 68.60 2.03 47.43 16 21 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 22 H -0.27 -12.84 7.11 99.48 0.71 -12.14 16 23 H -0.28 -14.23 7.11 99.48 0.71 -13.52 16 24 C -0.19 -8.24 9.93 30.62 0.30 -7.94 16 25 C -0.13 -5.92 9.17 30.62 0.28 -5.64 16 26 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 28 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.06 1.16 8.14 -2.38 -0.02 1.15 16 30 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 32 H 0.04 1.37 6.30 -2.39 -0.02 1.35 16 33 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.05 1.22 6.89 -2.39 -0.02 1.20 16 38 H 0.06 1.32 7.49 -2.38 -0.02 1.30 16 39 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 42 H 0.42 10.25 8.93 -96.74 -0.86 9.39 16 43 H 0.12 5.05 7.60 -2.39 -0.02 5.04 16 44 H 0.13 4.20 6.83 -2.39 -0.02 4.18 16 45 H 0.26 14.05 8.32 -92.70 -0.77 13.28 16 46 H 0.08 3.40 8.14 -2.39 -0.02 3.38 16 47 H 0.10 3.63 8.14 -2.39 -0.02 3.61 16 48 H 0.09 3.42 8.14 -2.39 -0.02 3.40 16 49 H 0.06 3.20 8.14 -2.39 -0.02 3.18 16 Total: -1.00 -69.88 396.24 1.03 -68.85 By element: Atomic # 1 Polarization: 30.82 SS G_CDS: 0.03 Total: 30.86 kcal Atomic # 6 Polarization: -79.09 SS G_CDS: 3.81 Total: -75.29 kcal Atomic # 7 Polarization: -80.36 SS G_CDS: -0.39 Total: -80.75 kcal Atomic # 8 Polarization: -91.96 SS G_CDS: -4.17 Total: -96.13 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Atomic # 16 Polarization: 105.31 SS G_CDS: -0.28 Total: 105.04 kcal Total: -69.88 1.03 -68.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451283059.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.253 kcal (2) G-P(sol) polarization free energy of solvation -69.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds