Wall clock time and date at job start Tue Mar 31 2020 11:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46828 * 2 1 4 4 C 1.53004 * 109.47079 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.46977 * 179.97438 * 4 3 2 6 6 H 1.09003 * 109.47361 * 305.00366 * 5 4 3 7 7 C 1.52999 * 109.47193 * 185.00041 * 5 4 3 8 8 C 1.52994 * 109.47308 * 176.91835 * 7 5 4 9 9 C 1.52998 * 109.47554 * 184.54214 * 8 7 5 10 10 N 1.46499 * 109.47133 * 64.99889 * 5 4 3 11 11 S 1.65600 * 120.00327 * 234.76151 * 10 5 4 12 12 O 1.42109 * 104.27448 * 308.47555 * 11 10 5 13 13 O 1.42094 * 104.27819 * 180.62003 * 11 10 5 14 14 C 1.81394 * 104.44893 * 64.54481 * 11 10 5 15 15 C 1.53005 * 109.47039 * 174.56089 * 14 11 10 16 16 C 1.50699 * 115.55224 * 62.89899 * 15 14 11 17 17 H 1.08003 * 119.99600 * 266.77213 * 16 15 14 18 18 C 1.37871 * 120.00047 * 86.76670 * 16 15 14 19 19 N 1.31516 * 119.99943 * 183.80514 * 18 16 15 20 20 Si 1.86798 * 120.00096 * 3.80128 * 18 16 15 21 21 H 1.48508 * 109.46966 * 93.39641 * 20 18 16 22 22 H 1.48505 * 109.47243 * 213.39518 * 20 18 16 23 23 H 1.48493 * 109.47269 * 333.39947 * 20 18 16 24 24 C 1.53004 * 117.49803 * 277.22250 * 15 14 11 25 25 C 1.53003 * 117.49672 * 208.56817 * 15 14 11 26 26 H 1.09001 * 109.46626 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47676 * 300.00166 * 1 2 3 28 28 H 1.09002 * 109.46943 * 60.00693 * 1 2 3 29 29 H 1.08998 * 109.47386 * 240.00561 * 2 1 3 30 30 H 1.08994 * 109.47251 * 119.99333 * 2 1 3 31 31 H 1.08998 * 109.47128 * 59.99499 * 3 2 1 32 32 H 1.09007 * 109.46863 * 299.99872 * 3 2 1 33 33 H 1.09004 * 109.46692 * 60.00408 * 4 3 2 34 34 H 1.08991 * 109.47052 * 299.99983 * 4 3 2 35 35 H 1.08993 * 109.47199 * 296.92279 * 7 5 4 36 36 H 1.09000 * 109.46610 * 56.91958 * 7 5 4 37 37 H 1.09002 * 109.47668 * 304.54458 * 8 7 5 38 38 H 1.08999 * 109.47096 * 64.54219 * 8 7 5 39 39 H 1.08999 * 109.47698 * 180.02562 * 9 8 7 40 40 H 1.09002 * 109.46833 * 300.00756 * 9 8 7 41 41 H 1.08999 * 109.46914 * 59.99894 * 9 8 7 42 42 H 0.97000 * 119.99541 * 54.76170 * 10 5 4 43 43 H 1.08996 * 109.47629 * 294.56150 * 14 11 10 44 44 H 1.09001 * 109.47259 * 54.56529 * 14 11 10 45 45 H 0.97001 * 119.99930 * 179.97438 * 19 18 16 46 46 H 1.09000 * 117.49827 * 0.02562 * 24 15 14 47 47 H 1.09002 * 117.49459 * 145.02084 * 24 15 14 48 48 H 1.09006 * 117.49679 * 214.97622 * 25 15 14 49 49 H 1.09001 * 117.50370 * 359.97366 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0799 2.8852 0.0000 6 1 3.6455 3.4237 -0.8423 7 6 5.6047 2.8870 -0.1251 8 6 6.1083 4.3296 -0.2030 9 6 7.6196 4.3302 -0.4416 10 7 3.6917 3.5409 1.2512 11 16 2.8416 4.9615 1.2126 12 8 3.5952 5.7972 0.3447 13 8 2.6614 5.2994 2.5809 14 6 1.2555 4.5193 0.4517 15 6 0.3202 5.7299 0.4820 16 6 0.7833 6.9289 -0.3047 17 1 1.3497 7.7086 0.1829 18 6 0.4842 7.0303 -1.6467 19 7 0.9514 8.0386 -2.3502 20 14 -0.5847 5.7358 -2.4658 21 1 -2.0021 6.1783 -2.4445 22 1 -0.1456 5.5488 -3.8721 23 1 -0.4561 4.4511 -1.7322 24 6 -0.4572 5.9898 1.7739 25 6 -1.1846 5.4587 0.5362 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 1.8934 -0.5137 -0.8900 30 1 1.8933 -0.5137 0.8900 31 1 1.6765 1.9564 0.8899 32 1 1.6765 1.9564 -0.8901 33 1 3.9336 0.9287 -0.8892 34 1 3.9329 0.9290 0.8908 35 1 6.0412 2.3963 0.7447 36 1 5.8957 2.3513 -1.0286 37 1 5.6106 4.8444 -1.0249 38 1 5.8881 4.8424 0.7333 39 1 7.9784 5.3579 -0.4967 40 1 8.1173 3.8154 0.3802 41 1 7.8397 3.8174 -1.3779 42 1 3.9327 3.1428 2.1023 43 1 1.4206 4.2136 -0.5813 44 1 0.8033 3.6969 1.0061 45 1 0.7412 8.1097 -3.2944 46 1 -0.3021 5.2986 2.6024 47 1 -0.6340 7.0281 2.0546 48 1 -1.8397 6.1479 0.0032 49 1 -1.5084 4.4180 0.5499 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451283060.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:34 Heat of formation + Delta-G solvation = -84.711696 kcal Electronic energy + Delta-G solvation = -27064.944556 eV Core-core repulsion = 23539.795412 eV Total energy + Delta-G solvation = -3525.149144 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -38.05877 -37.14523 -36.24000 -35.20919 -34.90814 -33.05955 -32.16415 -30.35411 -28.58435 -27.81909 -25.53177 -24.41142 -21.78603 -21.61618 -21.07719 -20.61207 -19.64243 -18.71417 -17.07041 -16.59567 -16.08165 -15.49907 -15.31839 -15.01745 -14.76271 -14.38655 -14.10957 -13.91022 -13.73642 -13.43699 -13.02705 -12.96871 -12.66376 -12.58071 -12.34438 -12.21253 -11.67433 -11.56908 -11.43051 -11.33427 -11.21119 -11.16393 -11.11848 -11.00761 -10.90303 -10.74037 -10.59709 -10.57007 -10.54583 -10.38592 -10.33390 -10.09669 -9.65494 -9.18872 -9.15358 -8.67138 -8.41849 -6.16071 -4.24278 1.00437 3.21287 3.31897 3.34466 3.43110 4.34878 4.43415 4.49698 4.77958 4.82961 4.91983 4.96065 5.03119 5.10133 5.10478 5.19667 5.28759 5.30859 5.42690 5.46702 5.61043 5.64402 5.67716 5.72870 5.78561 5.79826 5.85983 5.91606 5.94875 5.98176 6.02785 6.06090 6.09263 6.14549 6.19570 6.29731 6.30406 6.34213 6.41437 6.55366 6.64458 6.72947 6.87129 7.04572 7.29064 7.59298 8.37272 8.88728 9.44615 10.95111 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.009887 B = 0.006582 C = 0.005216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2831.370571 B = 4252.997388 C = 5367.274972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.121 4.121 3 C -0.134 4.134 4 C -0.128 4.128 5 C 0.150 3.850 6 H 0.090 0.910 7 C -0.124 4.124 8 C -0.128 4.128 9 C -0.150 4.150 10 N -1.124 6.124 11 S 2.612 3.388 12 O -0.931 6.931 13 O -0.974 6.974 14 C -0.576 4.576 15 C 0.005 3.995 16 C -0.510 4.510 17 H 0.086 0.914 18 C 0.090 3.910 19 N -0.880 5.880 20 Si 0.871 3.129 21 H -0.277 1.277 22 H -0.292 1.292 23 H -0.253 1.253 24 C -0.178 4.178 25 C -0.185 4.185 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.053 0.947 40 H 0.047 0.953 41 H 0.049 0.951 42 H 0.409 0.591 43 H 0.122 0.878 44 H 0.106 0.894 45 H 0.267 0.733 46 H 0.080 0.920 47 H 0.094 0.906 48 H 0.090 0.910 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.996 -16.782 3.862 17.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.159 4.159 3 C -0.171 4.171 4 C -0.167 4.167 5 C 0.043 3.957 6 H 0.108 0.892 7 C -0.163 4.163 8 C -0.165 4.165 9 C -0.207 4.207 10 N -0.880 5.880 11 S 2.707 3.293 12 O -0.921 6.921 13 O -0.964 6.964 14 C -0.707 4.707 15 C 0.002 3.998 16 C -0.547 4.547 17 H 0.104 0.896 18 C -0.115 4.115 19 N -0.515 5.515 20 Si 0.698 3.302 21 H -0.203 1.203 22 H -0.219 1.219 23 H -0.177 1.177 24 C -0.216 4.216 25 C -0.224 4.224 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.241 0.759 43 H 0.141 0.859 44 H 0.125 0.875 45 H 0.077 0.923 46 H 0.098 0.902 47 H 0.113 0.887 48 H 0.109 0.891 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.310 -15.760 3.798 17.058 hybrid contribution -1.051 -1.357 -0.551 1.802 sum 4.259 -17.116 3.247 17.935 Atomic orbital electron populations 1.21801 0.96000 1.01309 1.02229 1.21501 0.95837 0.96849 1.01680 1.21863 0.95361 0.97023 1.02871 1.21993 0.95786 0.96287 1.02627 1.20844 0.95360 0.93383 0.86144 0.89214 1.21948 0.94549 0.97979 1.01864 1.21567 0.95146 0.95993 1.03839 1.21772 0.96672 1.01480 1.00789 1.56067 1.72884 1.46013 1.13078 1.05018 0.76590 0.72956 0.74744 1.93608 1.67308 1.63083 1.68070 1.93510 1.87236 1.81762 1.33898 1.30376 1.20720 1.07161 1.12436 1.18844 0.89066 0.93069 0.98823 1.20334 1.36857 1.03585 0.93883 0.89575 1.24942 0.94768 0.95036 0.96791 1.69904 1.43230 1.30298 1.08096 0.86966 0.81109 0.83692 0.78390 1.20317 1.21870 1.17698 1.23026 1.05971 1.01658 0.90921 1.22972 0.96714 0.99822 1.02869 0.93016 0.92639 0.92589 0.92176 0.92210 0.91470 0.91454 0.90899 0.91350 0.91856 0.91289 0.90539 0.91552 0.92797 0.93410 0.93178 0.75876 0.85947 0.87527 0.92345 0.90163 0.88735 0.89131 0.90679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 9.91 37.16 0.37 -1.16 16 2 C -0.12 -1.13 5.93 -26.73 -0.16 -1.29 16 3 C -0.13 -1.44 4.38 -26.73 -0.12 -1.55 16 4 C -0.13 -1.23 4.89 -26.73 -0.13 -1.36 16 5 C 0.15 1.83 2.16 -67.93 -0.15 1.68 16 6 H 0.09 1.22 7.68 -51.93 -0.40 0.82 16 7 C -0.12 -1.39 4.90 -26.73 -0.13 -1.53 16 8 C -0.13 -1.80 4.75 -26.74 -0.13 -1.93 16 9 C -0.15 -1.75 9.91 37.16 0.37 -1.39 16 10 N -1.12 -15.29 4.18 -4.89 -0.02 -15.31 16 11 S 2.61 50.11 5.01 -107.50 -0.54 49.57 16 12 O -0.93 -21.37 15.39 -57.54 -0.89 -22.26 16 13 O -0.97 -20.81 18.08 -57.54 -1.04 -21.85 16 14 C -0.58 -10.93 4.56 37.16 0.17 -10.76 16 15 C 0.00 0.11 0.80 -155.66 -0.12 -0.02 16 16 C -0.51 -14.07 8.61 -34.44 -0.30 -14.36 16 17 H 0.09 2.65 8.06 -52.48 -0.42 2.23 16 18 C 0.09 2.52 5.47 -17.82 -0.10 2.42 16 19 N -0.88 -26.51 13.96 55.43 0.77 -25.73 16 20 Si 0.87 20.72 24.86 -169.99 -4.23 16.49 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.25 -5.47 5.76 56.52 0.33 -5.14 16 24 C -0.18 -3.66 9.96 -26.69 -0.27 -3.93 16 25 C -0.19 -3.79 7.29 -26.69 -0.19 -3.99 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.75 5.92 -51.93 -0.31 0.44 16 32 H 0.07 0.79 7.74 -51.93 -0.40 0.39 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.08 1.24 7.90 -51.93 -0.41 0.83 16 38 H 0.07 1.05 7.23 -51.93 -0.38 0.67 16 39 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.41 4.61 8.92 -34.47 -0.31 4.30 16 43 H 0.12 2.27 6.64 -51.93 -0.34 1.93 16 44 H 0.11 1.66 6.66 -51.92 -0.35 1.31 16 45 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 46 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 47 H 0.09 1.95 8.14 -51.93 -0.42 1.53 16 48 H 0.09 1.93 6.98 -51.93 -0.36 1.57 16 49 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 389.14 15.07 5.86 5.86 Total: -1.00 -33.21 389.14 -10.19 -43.40 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: -9.23 Total: 8.98 kcal Atomic # 6 Polarization: -38.27 SS G_CDS: -0.88 Total: -39.15 kcal Atomic # 7 Polarization: -41.80 SS G_CDS: 0.75 Total: -41.05 kcal Atomic # 8 Polarization: -42.19 SS G_CDS: -1.93 Total: -44.11 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.23 Total: 16.49 kcal Atomic # 16 Polarization: 50.11 SS G_CDS: -0.54 Total: 49.57 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.21 -10.19 -43.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451283060.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.313 kcal (2) G-P(sol) polarization free energy of solvation -33.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds