Wall clock time and date at job start Tue Mar 31 2020 11:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46828 * 2 1 4 4 C 1.53004 * 109.47079 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.46977 * 179.97438 * 4 3 2 6 6 H 1.09003 * 109.47361 * 305.00366 * 5 4 3 7 7 C 1.52999 * 109.47193 * 185.00041 * 5 4 3 8 8 C 1.52994 * 109.47308 * 176.91835 * 7 5 4 9 9 C 1.52998 * 109.47554 * 184.54214 * 8 7 5 10 10 N 1.46499 * 109.47133 * 64.99889 * 5 4 3 11 11 S 1.65600 * 120.00327 * 234.76151 * 10 5 4 12 12 O 1.42109 * 104.27448 * 308.47555 * 11 10 5 13 13 O 1.42094 * 104.27819 * 180.62003 * 11 10 5 14 14 C 1.81394 * 104.44893 * 64.54481 * 11 10 5 15 15 C 1.53005 * 109.47039 * 174.56089 * 14 11 10 16 16 C 1.50699 * 115.55224 * 62.89899 * 15 14 11 17 17 H 1.08003 * 119.99600 * 266.77213 * 16 15 14 18 18 C 1.37871 * 120.00047 * 86.76670 * 16 15 14 19 19 N 1.31516 * 119.99943 * 183.80514 * 18 16 15 20 20 Si 1.86798 * 120.00096 * 3.80128 * 18 16 15 21 21 H 1.48508 * 109.46966 * 93.39641 * 20 18 16 22 22 H 1.48505 * 109.47243 * 213.39518 * 20 18 16 23 23 H 1.48493 * 109.47269 * 333.39947 * 20 18 16 24 24 C 1.53004 * 117.49803 * 277.22250 * 15 14 11 25 25 C 1.53003 * 117.49672 * 208.56817 * 15 14 11 26 26 H 1.09001 * 109.46626 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47676 * 300.00166 * 1 2 3 28 28 H 1.09002 * 109.46943 * 60.00693 * 1 2 3 29 29 H 1.08998 * 109.47386 * 240.00561 * 2 1 3 30 30 H 1.08994 * 109.47251 * 119.99333 * 2 1 3 31 31 H 1.08998 * 109.47128 * 59.99499 * 3 2 1 32 32 H 1.09007 * 109.46863 * 299.99872 * 3 2 1 33 33 H 1.09004 * 109.46692 * 60.00408 * 4 3 2 34 34 H 1.08991 * 109.47052 * 299.99983 * 4 3 2 35 35 H 1.08993 * 109.47199 * 296.92279 * 7 5 4 36 36 H 1.09000 * 109.46610 * 56.91958 * 7 5 4 37 37 H 1.09002 * 109.47668 * 304.54458 * 8 7 5 38 38 H 1.08999 * 109.47096 * 64.54219 * 8 7 5 39 39 H 1.08999 * 109.47698 * 180.02562 * 9 8 7 40 40 H 1.09002 * 109.46833 * 300.00756 * 9 8 7 41 41 H 1.08999 * 109.46914 * 59.99894 * 9 8 7 42 42 H 0.97000 * 119.99541 * 54.76170 * 10 5 4 43 43 H 1.08996 * 109.47629 * 294.56150 * 14 11 10 44 44 H 1.09001 * 109.47259 * 54.56529 * 14 11 10 45 45 H 0.97001 * 119.99930 * 179.97438 * 19 18 16 46 46 H 1.09000 * 117.49827 * 0.02562 * 24 15 14 47 47 H 1.09002 * 117.49459 * 145.02084 * 24 15 14 48 48 H 1.09006 * 117.49679 * 214.97622 * 25 15 14 49 49 H 1.09001 * 117.50370 * 359.97366 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0799 2.8852 0.0000 6 1 3.6455 3.4237 -0.8423 7 6 5.6047 2.8870 -0.1251 8 6 6.1083 4.3296 -0.2030 9 6 7.6196 4.3302 -0.4416 10 7 3.6917 3.5409 1.2512 11 16 2.8416 4.9615 1.2126 12 8 3.5952 5.7972 0.3447 13 8 2.6614 5.2994 2.5809 14 6 1.2555 4.5193 0.4517 15 6 0.3202 5.7299 0.4820 16 6 0.7833 6.9289 -0.3047 17 1 1.3497 7.7086 0.1829 18 6 0.4842 7.0303 -1.6467 19 7 0.9514 8.0386 -2.3502 20 14 -0.5847 5.7358 -2.4658 21 1 -2.0021 6.1783 -2.4445 22 1 -0.1456 5.5488 -3.8721 23 1 -0.4561 4.4511 -1.7322 24 6 -0.4572 5.9898 1.7739 25 6 -1.1846 5.4587 0.5362 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 1.8934 -0.5137 -0.8900 30 1 1.8933 -0.5137 0.8900 31 1 1.6765 1.9564 0.8899 32 1 1.6765 1.9564 -0.8901 33 1 3.9336 0.9287 -0.8892 34 1 3.9329 0.9290 0.8908 35 1 6.0412 2.3963 0.7447 36 1 5.8957 2.3513 -1.0286 37 1 5.6106 4.8444 -1.0249 38 1 5.8881 4.8424 0.7333 39 1 7.9784 5.3579 -0.4967 40 1 8.1173 3.8154 0.3802 41 1 7.8397 3.8174 -1.3779 42 1 3.9327 3.1428 2.1023 43 1 1.4206 4.2136 -0.5813 44 1 0.8033 3.6969 1.0061 45 1 0.7412 8.1097 -3.2944 46 1 -0.3021 5.2986 2.6024 47 1 -0.6340 7.0281 2.0546 48 1 -1.8397 6.1479 0.0032 49 1 -1.5084 4.4180 0.5499 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451283060.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:33 Heat of formation + Delta-G solvation = -107.584286 kcal Electronic energy + Delta-G solvation = -27065.936386 eV Core-core repulsion = 23539.795412 eV Total energy + Delta-G solvation = -3526.140974 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.03827 -38.86012 -37.85188 -36.74749 -35.83668 -34.29792 -34.09441 -31.26274 -30.12565 -28.75075 -27.60260 -25.24863 -23.40448 -22.49006 -22.02917 -21.58046 -21.24742 -20.28906 -18.63908 -18.35410 -17.29129 -16.92678 -16.84845 -16.39416 -15.92284 -15.66472 -15.38602 -15.09041 -14.85803 -14.76056 -14.49852 -14.27230 -13.91506 -13.90110 -13.46666 -13.23585 -13.19665 -12.91365 -12.89164 -12.74522 -12.55122 -12.49787 -12.37898 -12.27733 -12.09917 -11.93135 -11.84730 -11.74293 -11.66233 -11.58792 -11.45536 -11.42363 -11.28414 -11.02578 -10.66846 -10.38896 -10.03636 -8.31484 -6.45268 -0.50992 1.34476 1.35801 1.50270 2.08282 2.35049 2.91168 3.00610 3.17162 3.45907 3.60917 3.80044 4.06206 4.08831 4.15277 4.22196 4.25322 4.33092 4.34770 4.36499 4.39155 4.50847 4.58321 4.60529 4.73746 4.76101 4.83284 4.92814 4.96169 4.97956 5.03285 5.07541 5.09051 5.16676 5.20310 5.24179 5.27013 5.34692 5.39465 5.42972 5.46065 5.57117 5.59584 5.61521 5.62041 6.19841 6.29619 6.66058 7.27552 8.84610 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.009887 B = 0.006582 C = 0.005216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2831.370571 B = 4252.997388 C = 5367.274972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.117 4.117 3 C -0.142 4.142 4 C -0.118 4.118 5 C 0.142 3.858 6 H 0.070 0.930 7 C -0.119 4.119 8 C -0.134 4.134 9 C -0.146 4.146 10 N -1.104 6.104 11 S 2.616 3.384 12 O -0.983 6.983 13 O -1.002 7.002 14 C -0.568 4.568 15 C -0.029 4.029 16 C -0.512 4.512 17 H 0.027 0.973 18 C 0.028 3.972 19 N -0.940 5.940 20 Si 0.932 3.068 21 H -0.268 1.268 22 H -0.295 1.295 23 H -0.210 1.210 24 C -0.176 4.176 25 C -0.168 4.168 26 H 0.061 0.939 27 H 0.052 0.948 28 H 0.046 0.954 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.041 0.959 38 H 0.040 0.960 39 H 0.041 0.959 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.423 0.577 43 H 0.128 0.872 44 H 0.151 0.849 45 H 0.268 0.732 46 H 0.110 0.890 47 H 0.079 0.921 48 H 0.079 0.921 49 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.232 -21.763 4.402 22.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.155 4.155 3 C -0.180 4.180 4 C -0.157 4.157 5 C 0.035 3.965 6 H 0.088 0.912 7 C -0.158 4.158 8 C -0.172 4.172 9 C -0.204 4.204 10 N -0.865 5.865 11 S 2.712 3.288 12 O -0.973 6.973 13 O -0.992 6.992 14 C -0.700 4.700 15 C -0.032 4.032 16 C -0.549 4.549 17 H 0.045 0.955 18 C -0.172 4.172 19 N -0.578 5.578 20 Si 0.754 3.246 21 H -0.194 1.194 22 H -0.222 1.222 23 H -0.132 1.132 24 C -0.213 4.213 25 C -0.206 4.206 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.110 0.890 34 H 0.107 0.893 35 H 0.104 0.896 36 H 0.111 0.889 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.259 0.741 43 H 0.146 0.854 44 H 0.169 0.831 45 H 0.076 0.924 46 H 0.128 0.872 47 H 0.098 0.902 48 H 0.098 0.902 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 4.556 -20.750 4.389 21.692 hybrid contribution -0.737 0.288 -0.649 1.023 sum 3.819 -20.462 3.740 21.148 Atomic orbital electron populations 1.21842 0.96450 1.01850 1.01605 1.21475 0.95433 0.95924 1.02651 1.21934 0.96062 0.97927 1.02032 1.21944 0.95117 0.94035 1.04580 1.21104 0.96135 0.94810 0.84455 0.91213 1.21951 0.93740 0.96004 1.04078 1.21571 0.96784 0.97717 1.01085 1.21750 0.94890 1.01342 1.02392 1.55494 1.71906 1.44414 1.14661 1.04511 0.76974 0.73743 0.73567 1.93560 1.68800 1.65812 1.69105 1.93457 1.87728 1.83033 1.35026 1.30221 1.19523 1.06687 1.13553 1.18769 0.91385 0.92807 1.00209 1.20428 1.35714 1.04318 0.94445 0.95497 1.25926 0.96275 0.97497 0.97455 1.70081 1.45844 1.33300 1.08557 0.85999 0.78949 0.82407 0.77227 1.19375 1.22247 1.13183 1.23109 1.04907 1.01875 0.91427 1.23078 0.94130 1.01876 1.01556 0.92015 0.92917 0.93507 0.91398 0.91041 0.91936 0.92701 0.88986 0.89278 0.89556 0.88904 0.93993 0.94158 0.93991 0.91517 0.91550 0.74082 0.85365 0.83103 0.92351 0.87177 0.90211 0.90213 0.86544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.51 9.91 71.98 0.71 -1.80 16 2 C -0.12 -1.68 5.93 30.60 0.18 -1.49 16 3 C -0.14 -2.48 4.38 30.60 0.13 -2.34 16 4 C -0.12 -1.76 4.89 30.59 0.15 -1.61 16 5 C 0.14 3.14 2.16 44.99 0.10 3.24 16 6 H 0.07 1.85 7.68 -2.39 -0.02 1.83 16 7 C -0.12 -2.38 4.90 30.59 0.15 -2.23 16 8 C -0.13 -3.81 4.75 30.59 0.15 -3.66 16 9 C -0.15 -3.32 9.91 71.98 0.71 -2.60 16 10 N -1.10 -28.32 4.18 -169.39 -0.71 -29.03 16 11 S 2.62 101.16 5.01 -56.49 -0.28 100.88 16 12 O -0.98 -48.00 15.39 -127.65 -1.96 -49.96 16 13 O -1.00 -43.09 18.08 -127.65 -2.31 -45.40 16 14 C -0.57 -20.44 4.56 71.98 0.33 -20.11 16 15 C -0.03 -1.30 0.80 -52.92 -0.04 -1.34 16 16 C -0.51 -29.51 8.61 25.60 0.22 -29.29 16 17 H 0.03 1.80 8.06 -2.91 -0.02 1.78 16 18 C 0.03 1.61 5.47 84.65 0.46 2.07 16 19 N -0.94 -59.88 13.96 21.45 0.30 -59.58 16 20 Si 0.93 42.21 24.86 68.60 1.71 43.92 16 21 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 22 H -0.30 -13.49 7.11 99.48 0.71 -12.78 16 23 H -0.21 -7.98 5.76 99.48 0.57 -7.41 16 24 C -0.18 -6.93 9.96 30.62 0.30 -6.63 16 25 C -0.17 -6.33 7.29 30.62 0.22 -6.10 16 26 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.06 1.12 5.92 -2.39 -0.01 1.11 16 32 H 0.05 1.10 7.74 -2.38 -0.02 1.08 16 33 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 34 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.04 1.45 7.90 -2.39 -0.02 1.43 16 38 H 0.04 1.32 7.23 -2.39 -0.02 1.30 16 39 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.42 8.52 8.92 -96.74 -0.86 7.66 16 43 H 0.13 4.48 6.64 -2.39 -0.02 4.47 16 44 H 0.15 4.03 6.66 -2.39 -0.02 4.01 16 45 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 46 H 0.11 3.67 8.14 -2.39 -0.02 3.65 16 47 H 0.08 3.33 8.14 -2.39 -0.02 3.31 16 48 H 0.08 3.20 6.98 -2.38 -0.02 3.18 16 49 H 0.12 3.47 8.14 -2.39 -0.02 3.45 16 Total: -1.00 -78.92 389.14 0.43 -78.50 By element: Atomic # 1 Polarization: 34.69 SS G_CDS: -0.10 Total: 34.59 kcal Atomic # 6 Polarization: -77.70 SS G_CDS: 3.78 Total: -73.91 kcal Atomic # 7 Polarization: -88.20 SS G_CDS: -0.41 Total: -88.61 kcal Atomic # 8 Polarization: -91.09 SS G_CDS: -4.27 Total: -95.36 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 1.71 Total: 43.92 kcal Atomic # 16 Polarization: 101.16 SS G_CDS: -0.28 Total: 100.88 kcal Total: -78.92 0.43 -78.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451283060.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.089 kcal (2) G-P(sol) polarization free energy of solvation -78.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds