Wall clock time and date at job start Tue Mar 31 2020 11:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47338 * 2 1 4 4 C 1.53004 * 109.47030 * 240.00240 * 2 1 3 5 5 C 1.52998 * 109.46982 * 120.00160 * 2 1 3 6 6 H 1.09007 * 110.88343 * 183.34017 * 5 2 1 7 7 C 1.55155 * 111.00759 * 307.26475 * 5 2 1 8 8 C 1.54330 * 103.02435 * 153.38313 * 7 5 2 9 9 N 1.47029 * 107.26437 * 338.14023 * 8 7 5 10 10 S 1.65598 * 125.65033 * 178.85125 * 9 8 7 11 11 O 1.42094 * 104.27770 * 153.61983 * 10 9 8 12 12 O 1.42101 * 104.27498 * 25.75967 * 10 9 8 13 13 C 1.81403 * 104.44767 * 269.69388 * 10 9 8 14 14 C 1.53003 * 109.46817 * 179.97438 * 13 10 9 15 15 C 1.52996 * 109.47167 * 59.99802 * 14 13 10 16 16 C 1.52996 * 109.47163 * 299.99530 * 14 13 10 17 17 C 1.50702 * 109.46868 * 179.97438 * 14 13 10 18 18 H 1.08000 * 119.99847 * 4.55267 * 17 14 13 19 19 C 1.37875 * 119.99921 * 184.55164 * 17 14 13 20 20 N 1.31512 * 119.99906 * 160.51164 * 19 17 14 21 21 Si 1.86800 * 120.00031 * 340.50650 * 19 17 14 22 22 H 1.48497 * 109.47240 * 275.21941 * 21 19 17 23 23 H 1.48503 * 109.47162 * 35.22297 * 21 19 17 24 24 H 1.48506 * 109.46934 * 155.21758 * 21 19 17 25 25 C 1.47426 * 108.70186 * 358.58495 * 9 8 7 26 26 H 1.08996 * 109.47119 * 307.01208 * 1 2 3 27 27 H 1.08995 * 109.46938 * 67.01090 * 1 2 3 28 28 H 1.08998 * 109.47339 * 187.00832 * 1 2 3 29 29 H 1.08997 * 109.47272 * 179.97438 * 3 2 1 30 30 H 1.08993 * 109.47116 * 300.00362 * 3 2 1 31 31 H 1.09005 * 109.46920 * 60.00352 * 3 2 1 32 32 H 1.09004 * 109.46871 * 300.00002 * 4 2 1 33 33 H 1.08993 * 109.47072 * 59.99854 * 4 2 1 34 34 H 1.08997 * 109.46791 * 180.02562 * 4 2 1 35 35 H 1.09006 * 110.71635 * 271.94344 * 7 5 2 36 36 H 1.08997 * 110.71513 * 35.21045 * 7 5 2 37 37 H 1.08996 * 109.99139 * 218.67038 * 8 7 5 38 38 H 1.08998 * 109.77974 * 97.49325 * 8 7 5 39 39 H 1.09001 * 109.47260 * 59.99735 * 13 10 9 40 40 H 1.09000 * 109.47105 * 299.99835 * 13 10 9 41 41 H 1.08998 * 109.46977 * 170.03436 * 15 14 13 42 42 H 1.08994 * 109.47644 * 290.04074 * 15 14 13 43 43 H 1.09003 * 109.46859 * 50.04134 * 15 14 13 44 44 H 1.09001 * 109.47332 * 300.00359 * 16 14 13 45 45 H 1.08997 * 109.47181 * 60.00364 * 16 14 13 46 46 H 1.08999 * 109.46917 * 179.97438 * 16 14 13 47 47 H 0.97002 * 120.00051 * 180.02562 * 20 19 17 48 48 H 1.08996 * 110.36606 * 143.19364 * 25 9 8 49 49 H 1.08995 * 110.37244 * 265.51932 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2492 6 1 3.1281 -0.6836 1.3027 7 6 1.3985 -0.1314 2.5329 8 6 1.4426 -1.3169 3.5201 9 7 1.5452 -2.5467 2.7208 10 16 1.6505 -4.0847 3.3255 11 8 1.1123 -4.9034 2.2963 12 8 1.0261 -4.0039 4.5994 13 6 3.4313 -4.3787 3.5070 14 6 3.6618 -5.7844 4.0653 15 6 3.0695 -6.8179 3.1053 16 6 2.9827 -5.9085 5.4307 17 6 5.1413 -6.0289 4.2156 18 1 5.8434 -5.2343 4.0105 19 6 5.5984 -7.2668 4.6149 20 7 6.8466 -7.6120 4.3862 21 14 4.4447 -8.4538 5.4807 22 1 4.4186 -8.1476 6.9336 23 1 3.0768 -8.3121 4.9203 24 1 4.9216 -9.8453 5.2765 25 6 1.5322 -2.1842 1.2919 26 1 -0.3633 0.6186 0.8206 27 1 -0.3633 0.4013 -0.9460 28 1 -0.3634 -1.0199 0.1254 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9563 0.8901 32 1 1.6766 -1.7489 -1.2493 33 1 1.6766 -0.2074 -2.1392 34 1 3.1300 -0.7216 -1.2490 35 1 1.9858 0.7072 2.9071 36 1 0.3684 0.1712 2.3451 37 1 0.5314 -1.3382 4.1177 38 1 2.3127 -1.2235 4.1699 39 1 3.8532 -3.6426 4.1913 40 1 3.9153 -4.2898 2.5344 41 1 3.3844 -7.8168 3.4073 42 1 1.9816 -6.7565 3.1312 43 1 3.4208 -6.6168 2.0932 44 1 3.4047 -5.1722 6.1147 45 1 1.9127 -5.7319 5.3217 46 1 3.1465 -6.9102 5.8282 47 1 7.1682 -8.4831 4.6668 48 1 2.2019 -2.8347 0.7295 49 1 0.5194 -2.2459 0.8939 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451391445.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:39 Heat of formation + Delta-G solvation = -90.060261 kcal Electronic energy + Delta-G solvation = -26857.259994 eV Core-core repulsion = 23331.878920 eV Total energy + Delta-G solvation = -3525.381075 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.50601 -38.51074 -38.19981 -37.00419 -36.70348 -34.07487 -31.25799 -29.70773 -28.97704 -28.16158 -28.13294 -27.85076 -27.11400 -23.70196 -22.61043 -21.51075 -19.89711 -19.23360 -18.83548 -18.15098 -17.51836 -17.26082 -16.91940 -16.47929 -15.57912 -15.17844 -15.06917 -14.95986 -14.90081 -14.83984 -14.40813 -14.30650 -14.19188 -14.14478 -13.91820 -13.33787 -13.24573 -13.12600 -12.95623 -12.81212 -12.72040 -12.63061 -12.56412 -12.43873 -12.38258 -12.10218 -12.05476 -11.92789 -11.87388 -11.80108 -11.27165 -11.23319 -11.13752 -11.02011 -10.69836 -10.47861 -9.85355 -8.38654 -6.34777 -0.74639 1.28707 1.34323 1.40945 1.72901 2.28298 2.79536 2.95350 3.06959 3.49873 3.69075 3.75190 3.84088 4.02233 4.14636 4.22336 4.23823 4.31418 4.46320 4.49394 4.51471 4.56082 4.57826 4.67496 4.72092 4.74994 4.83441 4.89010 4.91684 4.96097 4.97034 5.05237 5.09864 5.11479 5.15951 5.21002 5.21352 5.30038 5.35905 5.36384 5.43726 5.49503 5.52689 5.60584 5.61729 5.67485 6.24310 6.66127 7.28026 8.77205 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.024103 B = 0.003760 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.424203 B = 7445.212950 C = 7799.799114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.055 4.055 3 C -0.138 4.138 4 C -0.149 4.149 5 C -0.086 4.086 6 H 0.088 0.912 7 C -0.119 4.119 8 C 0.106 3.894 9 N -1.016 6.016 10 S 2.627 3.373 11 O -0.982 6.982 12 O -0.981 6.981 13 C -0.582 4.582 14 C 0.045 3.955 15 C -0.174 4.174 16 C -0.184 4.184 17 C -0.509 4.509 18 H 0.048 0.952 19 C 0.031 3.969 20 N -0.929 5.929 21 Si 0.908 3.092 22 H -0.274 1.274 23 H -0.220 1.220 24 H -0.301 1.301 25 C 0.110 3.890 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.101 0.899 36 H 0.091 0.909 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.137 0.863 40 H 0.133 0.867 41 H 0.057 0.943 42 H 0.049 0.951 43 H 0.062 0.938 44 H 0.069 0.931 45 H 0.060 0.940 46 H 0.047 0.953 47 H 0.267 0.733 48 H 0.070 0.930 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.567 19.439 -8.364 24.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.056 4.056 3 C -0.195 4.195 4 C -0.207 4.207 5 C -0.106 4.106 6 H 0.107 0.893 7 C -0.158 4.158 8 C -0.019 4.019 9 N -0.855 5.855 10 S 2.725 3.275 11 O -0.972 6.972 12 O -0.971 6.971 13 C -0.713 4.713 14 C 0.043 3.957 15 C -0.231 4.231 16 C -0.241 4.241 17 C -0.548 4.548 18 H 0.066 0.934 19 C -0.168 4.168 20 N -0.568 5.568 21 Si 0.736 3.264 22 H -0.201 1.201 23 H -0.144 1.144 24 H -0.229 1.229 25 C -0.014 4.014 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.120 0.880 36 H 0.110 0.890 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.155 0.845 40 H 0.152 0.848 41 H 0.076 0.924 42 H 0.068 0.932 43 H 0.081 0.919 44 H 0.088 0.912 45 H 0.078 0.922 46 H 0.065 0.935 47 H 0.076 0.924 48 H 0.089 0.911 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -13.194 18.673 -8.121 24.264 hybrid contribution 0.904 -0.978 0.555 1.442 sum -12.291 17.695 -7.567 22.835 Atomic orbital electron populations 1.22084 0.94358 1.01926 1.02447 1.20420 0.95861 0.95900 0.93381 1.21843 1.01034 0.94198 1.02408 1.21965 1.01242 1.00252 0.97192 1.22465 1.00746 0.92229 0.95123 0.89339 1.22839 1.03150 0.96386 0.93384 1.22001 1.02124 0.83265 0.94501 1.58526 1.89521 1.22046 1.15454 1.04398 0.78118 0.71940 0.73025 1.93514 1.77687 1.67275 1.58761 1.93499 1.74630 1.85696 1.43291 1.30433 1.23721 1.06144 1.11030 1.18205 0.96278 0.89247 0.91994 1.22691 0.98971 1.00860 1.00578 1.22818 0.99929 1.01964 0.99421 1.20858 0.89921 0.97498 1.46486 0.93382 1.25630 0.96183 0.99249 0.95783 1.70096 1.18387 1.22194 1.46082 0.86881 0.82115 0.77409 0.79990 1.20065 1.14396 1.22900 1.22407 1.01978 0.97384 0.79639 0.91409 0.91946 0.93042 0.92633 0.92121 0.91730 0.93099 0.91766 0.92513 0.88044 0.89043 0.91400 0.90913 0.84481 0.84826 0.92400 0.93175 0.91921 0.91156 0.92159 0.93471 0.92394 0.91121 0.90592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 7.74 71.98 0.56 -1.28 16 2 C -0.06 -0.69 0.60 -52.18 -0.03 -0.72 16 3 C -0.14 -1.38 8.33 71.98 0.60 -0.78 16 4 C -0.15 -2.02 8.26 71.98 0.59 -1.43 16 5 C -0.09 -1.33 2.39 -9.40 -0.02 -1.36 16 6 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 7 C -0.12 -1.65 5.49 31.78 0.17 -1.47 16 8 C 0.11 2.17 6.90 86.73 0.60 2.76 16 9 N -1.02 -26.51 3.62 -506.41 -1.83 -28.34 16 10 S 2.63 90.98 4.69 -56.49 -0.26 90.72 16 11 O -0.98 -38.41 15.45 -127.65 -1.97 -40.39 16 12 O -0.98 -37.76 15.22 -127.65 -1.94 -39.70 16 13 C -0.58 -21.44 5.10 71.98 0.37 -21.08 16 14 C 0.05 2.07 0.52 -52.93 -0.03 2.04 16 15 C -0.17 -7.81 6.92 71.98 0.50 -7.31 16 16 C -0.18 -8.10 7.32 71.98 0.53 -7.57 16 17 C -0.51 -27.87 8.60 25.60 0.22 -27.65 16 18 H 0.05 2.84 7.99 -2.91 -0.02 2.81 16 19 C 0.03 1.77 5.23 84.65 0.44 2.21 16 20 N -0.93 -56.59 13.96 21.45 0.30 -56.29 16 21 Si 0.91 43.81 22.94 68.60 1.57 45.39 16 22 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 23 H -0.22 -9.73 4.62 99.48 0.46 -9.27 16 24 H -0.30 -14.53 7.11 99.48 0.71 -13.83 16 25 C 0.11 2.41 5.18 86.86 0.45 2.86 16 26 H 0.07 0.71 6.38 -2.39 -0.02 0.70 16 27 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.05 0.75 5.88 -2.39 -0.01 0.73 16 29 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.06 0.56 7.54 -2.38 -0.02 0.54 16 32 H 0.05 0.77 7.24 -2.38 -0.02 0.76 16 33 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.10 1.01 8.14 -2.38 -0.02 0.99 16 36 H 0.09 1.10 5.70 -2.39 -0.01 1.08 16 37 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.14 4.57 8.14 -2.39 -0.02 4.55 16 40 H 0.13 4.60 8.14 -2.39 -0.02 4.58 16 41 H 0.06 2.66 4.04 -2.39 -0.01 2.65 16 42 H 0.05 2.10 6.19 -2.39 -0.01 2.09 16 43 H 0.06 2.69 8.11 -2.39 -0.02 2.67 16 44 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 45 H 0.06 2.48 5.46 -2.39 -0.01 2.47 16 46 H 0.05 2.11 2.63 -2.39 -0.01 2.10 16 47 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 48 H 0.07 1.57 8.04 -2.39 -0.02 1.55 16 49 H 0.08 1.61 5.76 -2.39 -0.01 1.60 16 Total: -1.00 -69.49 360.26 1.48 -68.01 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: 0.67 Total: 21.39 kcal Atomic # 6 Polarization: -65.73 SS G_CDS: 4.95 Total: -60.78 kcal Atomic # 7 Polarization: -83.10 SS G_CDS: -1.53 Total: -84.63 kcal Atomic # 8 Polarization: -76.17 SS G_CDS: -3.91 Total: -80.09 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 1.57 Total: 45.39 kcal Atomic # 16 Polarization: 90.98 SS G_CDS: -0.26 Total: 90.72 kcal Total: -69.49 1.48 -68.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451391445.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.051 kcal (2) G-P(sol) polarization free energy of solvation -69.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds