Wall clock time and date at job start Tue Mar 31 2020 12:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47159 * 2 1 4 4 C 1.52995 * 109.47001 * 185.21148 * 3 2 1 5 5 H 1.08999 * 109.59323 * 63.52004 * 4 3 2 6 6 C 1.53194 * 109.58447 * 303.09234 * 4 3 2 7 7 C 1.53040 * 109.31473 * 185.57817 * 6 4 3 8 8 C 1.53046 * 109.53477 * 61.36803 * 7 6 4 9 9 C 1.53193 * 109.31153 * 298.63311 * 8 7 6 10 10 N 1.46927 * 108.77499 * 54.63759 * 9 8 7 11 11 S 1.65597 * 120.63221 * 126.36714 * 10 9 8 12 12 O 1.42103 * 104.27616 * 15.38920 * 11 10 9 13 13 O 1.42099 * 104.27813 * 143.24169 * 11 10 9 14 14 C 1.81394 * 104.45130 * 259.31620 * 11 10 9 15 15 C 1.53001 * 109.47164 * 179.97438 * 14 11 10 16 16 C 1.52998 * 109.47178 * 300.00188 * 15 14 11 17 17 C 1.53000 * 109.47103 * 60.00161 * 15 14 11 18 18 C 1.50697 * 109.47353 * 179.97438 * 15 14 11 19 19 H 1.08004 * 119.99954 * 359.97438 * 18 15 14 20 20 C 1.37873 * 120.00302 * 180.02562 * 18 15 14 21 21 N 1.31515 * 120.00252 * 359.97438 * 20 18 15 22 22 Si 1.86804 * 119.99944 * 180.02562 * 20 18 15 23 23 H 1.48496 * 109.47256 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47363 * 119.99941 * 22 20 18 25 25 H 1.48509 * 109.46924 * 239.99508 * 22 20 18 26 26 H 1.08995 * 109.47615 * 60.00212 * 1 2 3 27 27 H 1.09004 * 109.47276 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46903 * 299.99779 * 1 2 3 29 29 H 1.09001 * 109.46648 * 239.99805 * 2 1 3 30 30 H 1.09002 * 109.47023 * 120.00025 * 2 1 3 31 31 H 1.09004 * 109.46460 * 305.20384 * 3 2 1 32 32 H 1.08990 * 109.47100 * 65.20461 * 3 2 1 33 33 H 1.09003 * 109.49745 * 305.53212 * 6 4 3 34 34 H 1.08998 * 109.49729 * 65.62960 * 6 4 3 35 35 H 1.09001 * 109.46205 * 301.35175 * 7 6 4 36 36 H 1.08995 * 109.46412 * 181.38378 * 7 6 4 37 37 H 1.09001 * 109.49402 * 178.68355 * 8 7 6 38 38 H 1.09000 * 109.49816 * 58.58488 * 8 7 6 39 39 H 1.09000 * 109.58881 * 294.85178 * 9 8 7 40 40 H 1.09002 * 109.58510 * 174.42239 * 9 8 7 41 41 H 1.08996 * 109.47242 * 299.99918 * 14 11 10 42 42 H 1.08997 * 109.47501 * 60.00006 * 14 11 10 43 43 H 1.08998 * 109.47225 * 59.99372 * 16 15 14 44 44 H 1.09001 * 109.47477 * 180.02562 * 16 15 14 45 45 H 1.09006 * 109.46616 * 299.99696 * 16 15 14 46 46 H 1.08996 * 109.47227 * 60.00076 * 17 15 14 47 47 H 1.09004 * 109.47162 * 180.02562 * 17 15 14 48 48 H 1.09000 * 109.46804 * 299.99443 * 17 15 14 49 49 H 0.96996 * 120.00156 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5644 1.4444 -0.1310 5 1 3.8492 1.0151 -1.0915 6 6 4.1785 0.6208 1.0053 7 6 5.7032 0.7408 0.9507 8 6 6.1085 2.2043 1.1413 9 6 5.5163 3.0458 0.0064 10 7 4.0648 2.8228 -0.0398 11 16 3.0128 4.1007 0.0104 12 8 3.8235 5.2333 -0.2713 13 8 1.9573 3.7203 -0.8617 14 6 2.4343 4.1436 1.7291 15 6 1.4444 5.2968 1.9054 16 6 2.1360 6.6189 1.5669 17 6 0.2507 5.0917 0.9705 18 6 0.9633 5.3321 3.3331 19 1 1.3269 4.6044 4.0436 20 6 0.0582 6.2925 3.7321 21 7 -0.3850 7.1783 2.8669 22 14 -0.5375 6.3366 5.5020 23 1 0.1076 5.2408 6.2689 24 1 -0.1826 7.6434 6.1115 25 1 -2.0118 6.1603 5.5326 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6025 1.9824 -0.8398 32 1 1.7548 1.9287 0.9328 33 1 3.8180 0.9966 1.9630 34 1 3.8916 -0.4247 0.8930 35 1 6.0608 0.3880 -0.0166 36 1 6.1437 0.1359 1.7432 37 1 7.1954 2.2857 1.1256 38 1 5.7299 2.5651 2.0976 39 1 5.9624 2.7462 -0.9419 40 1 5.7182 4.1011 0.1904 41 1 1.9420 3.2016 1.9703 42 1 3.2846 4.2902 2.3951 43 1 2.4837 6.5931 0.5342 44 1 1.4309 7.4406 1.6930 45 1 2.9864 6.7650 2.2330 46 1 -0.2420 4.1499 1.2117 47 1 -0.4543 5.9135 1.0958 48 1 0.5983 5.0660 -0.0622 49 1 -1.0215 7.8542 3.1477 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451396648.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:33 Heat of formation + Delta-G solvation = -84.413633 kcal Electronic energy + Delta-G solvation = -27749.893392 eV Core-core repulsion = 24224.757173 eV Total energy + Delta-G solvation = -3525.136219 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.01268 -36.86431 -36.28401 -35.29134 -34.69229 -32.42601 -31.66152 -30.93112 -26.81018 -26.57834 -25.71210 -25.22430 -24.00978 -22.83731 -20.83808 -20.49927 -19.26442 -18.38801 -17.02488 -16.13952 -15.95865 -15.35831 -15.12109 -14.84749 -14.53062 -14.41968 -14.30462 -13.76038 -13.51986 -13.34041 -13.12790 -13.06725 -12.50832 -12.47393 -12.10590 -11.92088 -11.79805 -11.50868 -11.37463 -11.17107 -11.09246 -11.07760 -11.00450 -10.91746 -10.81618 -10.69184 -10.51663 -10.40292 -10.33819 -10.26564 -10.04318 -9.75666 -9.60978 -9.50859 -8.82443 -8.58105 -8.40356 -6.03423 -4.15211 0.88150 3.10301 3.24312 3.32876 3.35435 4.32023 4.39056 4.50410 4.63796 4.83794 4.84730 4.97260 5.04794 5.20117 5.22173 5.23787 5.30142 5.42422 5.51354 5.59412 5.66766 5.70369 5.76208 5.81200 5.88370 5.93451 5.94612 5.96550 6.04238 6.06716 6.24170 6.28357 6.32321 6.39002 6.49810 6.71597 6.74892 6.80504 6.84205 6.91895 7.05410 7.32244 7.51010 7.68049 7.98363 8.10179 8.33538 8.83520 9.50231 10.97887 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014132 B = 0.005167 C = 0.004737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.808144 B = 5417.395642 C = 5909.292845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.111 4.111 3 C -0.193 4.193 4 C 0.163 3.837 5 H 0.073 0.927 6 C -0.134 4.134 7 C -0.116 4.116 8 C -0.137 4.137 9 C 0.119 3.881 10 N -1.006 6.006 11 S 2.594 3.406 12 O -0.967 6.967 13 O -0.959 6.959 14 C -0.585 4.585 15 C 0.083 3.917 16 C -0.164 4.164 17 C -0.162 4.162 18 C -0.500 4.500 19 H 0.058 0.942 20 C 0.065 3.935 21 N -0.883 5.883 22 Si 0.894 3.106 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.283 1.283 26 H 0.058 0.942 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.134 0.866 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.095 0.905 41 H 0.119 0.881 42 H 0.115 0.885 43 H 0.027 0.973 44 H 0.095 0.905 45 H 0.035 0.965 46 H 0.036 0.964 47 H 0.094 0.906 48 H 0.028 0.972 49 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.238 -13.644 -4.624 17.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.149 4.149 3 C -0.231 4.231 4 C 0.057 3.943 5 H 0.091 0.909 6 C -0.173 4.173 7 C -0.153 4.153 8 C -0.176 4.176 9 C -0.007 4.007 10 N -0.842 5.842 11 S 2.695 3.305 12 O -0.957 6.957 13 O -0.949 6.949 14 C -0.718 4.718 15 C 0.080 3.920 16 C -0.221 4.221 17 C -0.220 4.220 18 C -0.539 4.539 19 H 0.077 0.923 20 C -0.137 4.137 21 N -0.522 5.522 22 Si 0.722 3.278 23 H -0.199 1.199 24 H -0.209 1.209 25 H -0.209 1.209 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.152 0.848 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.113 0.887 41 H 0.138 0.862 42 H 0.134 0.866 43 H 0.046 0.954 44 H 0.113 0.887 45 H 0.054 0.946 46 H 0.055 0.945 47 H 0.113 0.887 48 H 0.047 0.953 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.939 -12.924 -5.424 16.624 hybrid contribution -0.226 -0.283 1.809 1.845 sum 8.713 -13.207 -3.615 16.230 Atomic orbital electron populations 1.21778 0.95577 1.01116 1.02714 1.21402 0.96204 0.95734 1.01569 1.23132 0.93738 0.99627 1.06615 1.20913 0.93500 0.81459 0.98457 0.90903 1.22059 0.95583 1.00192 0.99483 1.21465 0.95874 0.96353 1.01654 1.21948 1.00453 0.95768 0.99458 1.21380 0.79572 1.01141 0.98583 1.58040 1.16537 1.19541 1.90061 1.05623 0.73495 0.72170 0.79210 1.93504 1.68288 1.49056 1.84892 1.93440 1.56323 1.81212 1.63899 1.30730 1.10656 1.09875 1.20548 1.17920 0.89270 0.87193 0.97570 1.22273 1.00368 1.02051 0.97442 1.22261 1.01325 1.02725 0.95692 1.20979 1.25150 1.14431 0.93387 0.92338 1.24932 0.96003 0.95348 0.97436 1.69810 1.31612 1.17099 1.33651 0.86509 0.78580 0.77932 0.84805 1.19864 1.20939 1.20934 0.92301 0.93109 0.92337 0.92117 0.92135 0.84799 0.91134 0.91227 0.90827 0.92040 0.92015 0.91029 0.91318 0.91668 0.88713 0.86238 0.86646 0.95428 0.88656 0.94564 0.94488 0.88736 0.95333 0.92815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.91 37.16 0.37 -1.42 16 2 C -0.11 -1.24 5.34 -26.73 -0.14 -1.38 16 3 C -0.19 -2.69 3.39 -26.73 -0.09 -2.78 16 4 C 0.16 2.06 3.02 -67.60 -0.20 1.86 16 5 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 6 C -0.13 -1.40 4.75 -26.61 -0.13 -1.53 16 7 C -0.12 -1.08 5.88 -26.69 -0.16 -1.24 16 8 C -0.14 -1.41 6.08 -26.61 -0.16 -1.57 16 9 C 0.12 1.49 6.38 -3.71 -0.02 1.47 16 10 N -1.01 -14.80 3.21 -106.47 -0.34 -15.14 16 11 S 2.59 49.20 3.87 -107.50 -0.42 48.78 16 12 O -0.97 -20.70 14.03 -57.54 -0.81 -21.50 16 13 O -0.96 -19.55 11.67 -57.54 -0.67 -20.22 16 14 C -0.58 -11.61 4.87 37.16 0.18 -11.43 16 15 C 0.08 2.01 0.52 -155.66 -0.08 1.92 16 16 C -0.16 -4.07 7.78 37.16 0.29 -3.78 16 17 C -0.16 -3.97 7.77 37.16 0.29 -3.68 16 18 C -0.50 -13.14 8.01 -34.44 -0.28 -13.41 16 19 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 20 C 0.06 1.72 5.15 -17.82 -0.09 1.62 16 21 N -0.88 -24.14 9.35 55.43 0.52 -23.62 16 22 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 23 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.60 6.82 -51.93 -0.35 0.25 16 31 H 0.13 2.18 5.29 -52.23 -0.28 1.91 16 32 H 0.07 1.06 5.03 -51.93 -0.26 0.79 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.65 6.84 -51.93 -0.36 0.29 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.09 1.28 6.80 -51.93 -0.35 0.93 16 41 H 0.12 2.18 5.72 -51.93 -0.30 1.88 16 42 H 0.12 2.13 8.14 -51.93 -0.42 1.71 16 43 H 0.03 0.65 5.46 -51.93 -0.28 0.37 16 44 H 0.09 2.55 6.07 -51.93 -0.32 2.23 16 45 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 46 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.09 2.50 6.07 -51.93 -0.32 2.19 16 48 H 0.03 0.66 5.47 -51.93 -0.28 0.38 16 49 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 361.45 15.07 5.45 5.45 Total: -1.00 -30.02 361.45 -10.07 -40.10 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -8.55 Total: 5.86 kcal Atomic # 6 Polarization: -35.12 SS G_CDS: -0.23 Total: -35.35 kcal Atomic # 7 Polarization: -38.93 SS G_CDS: 0.18 Total: -38.76 kcal Atomic # 8 Polarization: -40.24 SS G_CDS: -1.48 Total: -41.72 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Atomic # 16 Polarization: 49.20 SS G_CDS: -0.42 Total: 48.78 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.02 -10.07 -40.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451396648.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.316 kcal (2) G-P(sol) polarization free energy of solvation -30.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds