Wall clock time and date at job start Tue Mar 31 2020 12:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47031 * 2 1 4 4 C 1.52995 * 109.46980 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.47153 * 304.99898 * 4 3 2 6 6 N 1.46501 * 109.46963 * 65.00130 * 4 3 2 7 7 S 1.65596 * 119.99934 * 231.50455 * 6 4 3 8 8 O 1.42103 * 104.28087 * 303.39218 * 7 6 4 9 9 O 1.42100 * 104.28033 * 175.52986 * 7 6 4 10 10 C 1.81406 * 104.44829 * 59.46112 * 7 6 4 11 11 C 1.53004 * 109.47127 * 183.76375 * 10 7 6 12 12 C 1.50692 * 115.54875 * 296.14197 * 11 10 7 13 13 H 1.08001 * 120.00510 * 99.42490 * 12 11 10 14 14 C 1.37880 * 119.99912 * 279.14250 * 12 11 10 15 15 N 1.31516 * 120.00053 * 355.36539 * 14 12 11 16 16 Si 1.86803 * 120.00063 * 175.36054 * 14 12 11 17 17 H 1.48498 * 109.47076 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46797 * 120.00106 * 16 14 12 19 19 H 1.48494 * 109.47317 * 240.00315 * 16 14 12 20 20 C 1.53005 * 117.51490 * 81.84041 * 11 10 7 21 21 C 1.52995 * 117.49726 * 150.46856 * 11 10 7 22 22 C 1.53004 * 109.47117 * 184.99886 * 4 3 2 23 23 C 1.53002 * 109.47222 * 304.44036 * 22 4 3 24 24 C 1.53004 * 109.46896 * 64.43790 * 22 4 3 25 25 C 1.53000 * 109.47413 * 184.43744 * 22 4 3 26 26 H 1.09002 * 109.46840 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.46811 * 299.99529 * 1 2 3 28 28 H 1.08999 * 109.47384 * 59.99998 * 1 2 3 29 29 H 1.09002 * 109.46880 * 240.00104 * 2 1 3 30 30 H 1.08999 * 109.47384 * 120.00002 * 2 1 3 31 31 H 1.08999 * 109.47056 * 59.99802 * 3 2 1 32 32 H 1.08999 * 109.47038 * 300.00214 * 3 2 1 33 33 H 0.96999 * 119.99988 * 51.51525 * 6 4 3 34 34 H 1.08997 * 109.47126 * 63.76544 * 10 7 6 35 35 H 1.09004 * 109.46842 * 303.76016 * 10 7 6 36 36 H 0.96994 * 119.99946 * 184.99880 * 15 14 12 37 37 H 1.09005 * 117.49486 * 214.97045 * 20 11 10 38 38 H 1.09001 * 117.50271 * 359.97438 * 20 11 10 39 39 H 1.08997 * 117.50031 * 359.97438 * 21 11 10 40 40 H 1.09005 * 117.49889 * 144.97416 * 21 11 10 41 41 H 1.09001 * 109.47120 * 59.99557 * 23 22 4 42 42 H 1.09000 * 109.47380 * 179.97438 * 23 22 4 43 43 H 1.09001 * 109.47258 * 299.99903 * 23 22 4 44 44 H 1.09001 * 109.46991 * 60.00153 * 24 22 4 45 45 H 1.09000 * 109.47122 * 180.02562 * 24 22 4 46 46 H 1.09001 * 109.47075 * 300.00216 * 24 22 4 47 47 H 1.08996 * 109.46896 * 64.93267 * 25 22 4 48 48 H 1.08993 * 109.46693 * 184.93465 * 25 22 4 49 49 H 1.08996 * 109.46642 * 304.93750 * 25 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9336 0.8530 0.8409 6 7 4.0577 0.8590 -1.2528 7 16 5.1753 -0.3624 -1.2169 8 8 6.2643 0.1802 -0.4827 9 8 5.3256 -0.7401 -2.5785 10 6 4.3690 -1.6862 -0.2745 11 6 5.3462 -2.8489 -0.0898 12 6 5.7820 -3.5391 -1.3565 13 1 6.7352 -3.2972 -1.8029 14 6 4.9663 -4.4838 -1.9425 15 7 3.8510 -4.8489 -1.3487 16 14 5.4452 -5.2450 -3.5797 17 1 6.7361 -4.6689 -4.0347 18 1 5.5885 -6.7143 -3.4194 19 1 4.3921 -4.9573 -4.5863 20 6 6.3690 -2.7395 1.0429 21 6 5.1917 -3.7089 1.1661 22 6 4.0800 2.8796 0.1251 23 6 3.4804 3.7333 -0.9941 24 6 3.6638 3.4516 1.4817 25 6 5.6059 2.8908 0.0134 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 3.7262 1.1882 -2.1028 34 1 3.4891 -2.0337 -0.8159 35 1 4.0682 -1.3058 0.7018 36 1 3.3139 -5.5644 -1.7233 37 1 7.3571 -3.1669 0.8718 38 1 6.3461 -1.8389 1.6566 39 1 4.3941 -3.4461 1.8610 40 1 5.4048 -4.7741 1.0761 41 1 2.3934 3.7253 -0.9145 42 1 3.8434 4.7572 -0.9043 43 1 3.7770 3.3258 -1.9606 44 1 4.0909 2.8434 2.2790 45 1 4.0267 4.4755 1.5711 46 1 2.5767 3.4436 1.5613 47 1 5.8995 2.5658 -0.9847 48 1 5.9756 3.9008 0.1901 49 1 6.0294 2.2138 0.7552 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451774162.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:21 Heat of formation + Delta-G solvation = -80.196113 kcal Electronic energy + Delta-G solvation = -27409.011515 eV Core-core repulsion = 23884.058182 eV Total energy + Delta-G solvation = -3524.953333 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.05882 -36.74102 -36.13166 -35.03337 -34.46178 -32.67863 -32.02663 -28.43872 -28.17529 -27.33396 -26.68794 -25.44688 -23.66271 -21.18595 -21.04740 -19.71237 -18.85599 -18.58899 -16.88768 -16.41527 -15.98782 -15.21353 -15.06652 -14.72286 -14.61919 -14.35179 -14.25529 -13.80586 -13.58257 -13.20269 -13.09157 -12.74383 -12.26776 -12.08983 -11.98716 -11.87119 -11.80903 -11.60400 -11.48078 -11.27616 -11.16568 -11.09143 -10.97365 -10.94302 -10.91867 -10.74269 -10.65997 -10.53464 -10.42728 -10.40586 -10.28831 -10.06414 -9.60913 -9.07317 -8.98352 -8.54653 -8.06600 -6.11728 -4.23018 1.13993 3.30125 3.38623 3.47047 3.50382 4.39548 4.53478 4.58809 4.78834 4.85899 5.04325 5.10493 5.14224 5.15157 5.20836 5.27390 5.34435 5.48818 5.57260 5.59819 5.62865 5.72288 5.78473 5.82534 5.86835 5.92834 5.95417 5.99403 6.06892 6.11638 6.12577 6.22807 6.26434 6.31192 6.31634 6.38005 6.43782 6.55649 6.64990 6.70036 6.73166 7.00949 7.24022 7.36479 7.43604 7.82292 8.21889 8.82739 9.48608 10.95199 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015494 B = 0.005125 C = 0.004772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.710468 B = 5461.595298 C = 5865.801451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.134 4.134 3 C -0.131 4.131 4 C 0.165 3.835 5 H 0.083 0.917 6 N -1.123 6.123 7 S 2.604 3.396 8 O -0.969 6.969 9 O -0.954 6.954 10 C -0.553 4.553 11 C 0.043 3.957 12 C -0.512 4.512 13 H 0.068 0.932 14 C 0.081 3.919 15 N -0.875 5.875 16 Si 0.891 3.109 17 H -0.267 1.267 18 H -0.284 1.284 19 H -0.280 1.280 20 C -0.208 4.208 21 C -0.139 4.139 22 C -0.079 4.079 23 C -0.142 4.142 24 C -0.143 4.143 25 C -0.138 4.138 26 H 0.055 0.945 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.409 0.591 34 H 0.132 0.868 35 H 0.096 0.904 36 H 0.262 0.738 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.087 0.913 41 H 0.056 0.944 42 H 0.051 0.949 43 H 0.056 0.944 44 H 0.057 0.943 45 H 0.055 0.945 46 H 0.057 0.943 47 H 0.058 0.942 48 H 0.045 0.955 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.116 14.444 5.014 16.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.172 4.172 3 C -0.170 4.170 4 C 0.057 3.943 5 H 0.101 0.899 6 N -0.879 5.879 7 S 2.701 3.299 8 O -0.959 6.959 9 O -0.944 6.944 10 C -0.685 4.685 11 C 0.040 3.960 12 C -0.549 4.549 13 H 0.086 0.914 14 C -0.124 4.124 15 N -0.510 5.510 16 Si 0.718 3.282 17 H -0.191 1.191 18 H -0.210 1.210 19 H -0.206 1.206 20 C -0.246 4.246 21 C -0.178 4.178 22 C -0.081 4.081 23 C -0.199 4.199 24 C -0.201 4.201 25 C -0.196 4.196 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.243 0.757 34 H 0.150 0.850 35 H 0.115 0.885 36 H 0.071 0.929 37 H 0.103 0.897 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.105 0.895 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.076 0.924 45 H 0.074 0.926 46 H 0.076 0.924 47 H 0.077 0.923 48 H 0.064 0.936 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.375 14.359 4.704 16.038 hybrid contribution -0.701 -0.655 -0.829 1.268 sum -6.076 13.704 3.875 15.483 Atomic orbital electron populations 1.21736 0.95995 1.01733 1.01185 1.21678 0.95870 0.96600 1.03005 1.22110 0.94636 0.97479 1.02734 1.20765 0.93854 0.93795 0.85929 0.89879 1.56028 1.64437 1.54386 1.13032 1.05186 0.74503 0.74532 0.75677 1.93511 1.50523 1.76878 1.74952 1.93548 1.84896 1.82868 1.33115 1.30032 1.12536 1.14295 1.11680 1.18272 0.93571 0.93465 0.90664 1.20568 1.04463 1.23490 1.06407 0.91423 1.24946 0.94268 0.95991 0.97195 1.70002 1.13602 1.28031 1.39387 0.86530 0.79363 0.78363 0.83937 1.19148 1.21001 1.20552 1.23156 0.95375 1.01305 1.04724 1.22526 0.97550 0.97104 1.00615 1.20903 0.96863 0.94728 0.95570 1.21909 1.00460 0.99149 0.98378 1.21931 1.01158 1.00784 0.96205 1.21889 0.93283 1.00869 1.03545 0.92627 0.93127 0.93017 0.91216 0.91696 0.90813 0.91072 0.75726 0.84957 0.88541 0.92865 0.89665 0.90781 0.91715 0.89488 0.92476 0.92960 0.92505 0.92423 0.92603 0.92404 0.92319 0.93612 0.91179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.91 37.16 0.37 -1.20 16 2 C -0.13 -1.59 5.40 -26.73 -0.14 -1.74 16 3 C -0.13 -1.34 4.10 -26.73 -0.11 -1.45 16 4 C 0.16 2.00 1.40 -67.93 -0.10 1.90 16 5 H 0.08 1.05 6.98 -51.93 -0.36 0.68 16 6 N -1.12 -16.18 3.63 -4.89 -0.02 -16.20 16 7 S 2.60 51.41 5.05 -107.50 -0.54 50.87 16 8 O -0.97 -20.23 15.11 -57.54 -0.87 -21.10 16 9 O -0.95 -22.77 17.56 -57.54 -1.01 -23.78 16 10 C -0.55 -11.30 5.11 37.16 0.19 -11.11 16 11 C 0.04 1.02 1.36 -155.66 -0.21 0.81 16 12 C -0.51 -14.01 7.98 -34.44 -0.27 -14.29 16 13 H 0.07 1.91 7.82 -52.49 -0.41 1.50 16 14 C 0.08 2.21 5.44 -17.82 -0.10 2.11 16 15 N -0.87 -24.01 12.85 55.43 0.71 -23.29 16 16 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 17 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 C -0.21 -4.53 9.96 -26.73 -0.27 -4.79 16 21 C -0.14 -3.14 9.39 -26.73 -0.25 -3.39 16 22 C -0.08 -0.87 0.62 -154.50 -0.10 -0.97 16 23 C -0.14 -1.38 7.86 37.16 0.29 -1.08 16 24 C -0.14 -1.32 8.22 37.16 0.31 -1.01 16 25 C -0.14 -1.85 6.98 37.16 0.26 -1.59 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.94 6.85 -51.93 -0.36 0.59 16 30 H 0.06 0.79 7.85 -51.93 -0.41 0.39 16 31 H 0.07 0.65 6.32 -51.93 -0.33 0.32 16 32 H 0.07 0.67 6.65 -51.93 -0.35 0.33 16 33 H 0.41 5.25 8.09 -34.47 -0.28 4.97 16 34 H 0.13 2.83 7.47 -51.93 -0.39 2.45 16 35 H 0.10 1.66 7.00 -51.92 -0.36 1.29 16 36 H 0.26 6.85 8.32 -40.82 -0.34 6.51 16 37 H 0.08 1.84 8.14 -51.93 -0.42 1.42 16 38 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 39 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 40 H 0.09 2.10 8.14 -51.93 -0.42 1.67 16 41 H 0.06 0.49 6.47 -51.93 -0.34 0.15 16 42 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.58 7.18 -51.93 -0.37 0.21 16 44 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.06 0.46 6.44 -51.93 -0.33 0.13 16 47 H 0.06 0.87 7.07 -51.93 -0.37 0.51 16 48 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.07 1.04 7.27 -51.93 -0.38 0.66 16 LS Contribution 386.15 15.07 5.82 5.82 Total: -1.00 -31.40 386.15 -9.88 -41.27 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -8.81 Total: 7.51 kcal Atomic # 6 Polarization: -37.65 SS G_CDS: -0.13 Total: -37.79 kcal Atomic # 7 Polarization: -40.19 SS G_CDS: 0.69 Total: -39.49 kcal Atomic # 8 Polarization: -43.00 SS G_CDS: -1.88 Total: -44.88 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: 51.41 SS G_CDS: -0.54 Total: 50.87 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.40 -9.88 -41.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451774162.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.925 kcal (2) G-P(sol) polarization free energy of solvation -31.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds