Wall clock time and date at job start Tue Mar 31 2020 12:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47031 * 2 1 4 4 C 1.52995 * 109.46980 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.47153 * 304.99898 * 4 3 2 6 6 N 1.46501 * 109.46963 * 65.00130 * 4 3 2 7 7 S 1.65596 * 119.99934 * 231.50455 * 6 4 3 8 8 O 1.42103 * 104.28087 * 303.39218 * 7 6 4 9 9 O 1.42100 * 104.28033 * 175.52986 * 7 6 4 10 10 C 1.81406 * 104.44829 * 59.46112 * 7 6 4 11 11 C 1.53004 * 109.47127 * 183.76375 * 10 7 6 12 12 C 1.50692 * 115.54875 * 296.14197 * 11 10 7 13 13 H 1.08001 * 120.00510 * 99.42490 * 12 11 10 14 14 C 1.37880 * 119.99912 * 279.14250 * 12 11 10 15 15 N 1.31516 * 120.00053 * 355.36539 * 14 12 11 16 16 Si 1.86803 * 120.00063 * 175.36054 * 14 12 11 17 17 H 1.48498 * 109.47076 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46797 * 120.00106 * 16 14 12 19 19 H 1.48494 * 109.47317 * 240.00315 * 16 14 12 20 20 C 1.53005 * 117.51490 * 81.84041 * 11 10 7 21 21 C 1.52995 * 117.49726 * 150.46856 * 11 10 7 22 22 C 1.53004 * 109.47117 * 184.99886 * 4 3 2 23 23 C 1.53002 * 109.47222 * 304.44036 * 22 4 3 24 24 C 1.53004 * 109.46896 * 64.43790 * 22 4 3 25 25 C 1.53000 * 109.47413 * 184.43744 * 22 4 3 26 26 H 1.09002 * 109.46840 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.46811 * 299.99529 * 1 2 3 28 28 H 1.08999 * 109.47384 * 59.99998 * 1 2 3 29 29 H 1.09002 * 109.46880 * 240.00104 * 2 1 3 30 30 H 1.08999 * 109.47384 * 120.00002 * 2 1 3 31 31 H 1.08999 * 109.47056 * 59.99802 * 3 2 1 32 32 H 1.08999 * 109.47038 * 300.00214 * 3 2 1 33 33 H 0.96999 * 119.99988 * 51.51525 * 6 4 3 34 34 H 1.08997 * 109.47126 * 63.76544 * 10 7 6 35 35 H 1.09004 * 109.46842 * 303.76016 * 10 7 6 36 36 H 0.96994 * 119.99946 * 184.99880 * 15 14 12 37 37 H 1.09005 * 117.49486 * 214.97045 * 20 11 10 38 38 H 1.09001 * 117.50271 * 359.97438 * 20 11 10 39 39 H 1.08997 * 117.50031 * 359.97438 * 21 11 10 40 40 H 1.09005 * 117.49889 * 144.97416 * 21 11 10 41 41 H 1.09001 * 109.47120 * 59.99557 * 23 22 4 42 42 H 1.09000 * 109.47380 * 179.97438 * 23 22 4 43 43 H 1.09001 * 109.47258 * 299.99903 * 23 22 4 44 44 H 1.09001 * 109.46991 * 60.00153 * 24 22 4 45 45 H 1.09000 * 109.47122 * 180.02562 * 24 22 4 46 46 H 1.09001 * 109.47075 * 300.00216 * 24 22 4 47 47 H 1.08996 * 109.46896 * 64.93267 * 25 22 4 48 48 H 1.08993 * 109.46693 * 184.93465 * 25 22 4 49 49 H 1.08996 * 109.46642 * 304.93750 * 25 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9336 0.8530 0.8409 6 7 4.0577 0.8590 -1.2528 7 16 5.1753 -0.3624 -1.2169 8 8 6.2643 0.1802 -0.4827 9 8 5.3256 -0.7401 -2.5785 10 6 4.3690 -1.6862 -0.2745 11 6 5.3462 -2.8489 -0.0898 12 6 5.7820 -3.5391 -1.3565 13 1 6.7352 -3.2972 -1.8029 14 6 4.9663 -4.4838 -1.9425 15 7 3.8510 -4.8489 -1.3487 16 14 5.4452 -5.2450 -3.5797 17 1 6.7361 -4.6689 -4.0347 18 1 5.5885 -6.7143 -3.4194 19 1 4.3921 -4.9573 -4.5863 20 6 6.3690 -2.7395 1.0429 21 6 5.1917 -3.7089 1.1661 22 6 4.0800 2.8796 0.1251 23 6 3.4804 3.7333 -0.9941 24 6 3.6638 3.4516 1.4817 25 6 5.6059 2.8908 0.0134 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 3.7262 1.1882 -2.1028 34 1 3.4891 -2.0337 -0.8159 35 1 4.0682 -1.3058 0.7018 36 1 3.3139 -5.5644 -1.7233 37 1 7.3571 -3.1669 0.8718 38 1 6.3461 -1.8389 1.6566 39 1 4.3941 -3.4461 1.8610 40 1 5.4048 -4.7741 1.0761 41 1 2.3934 3.7253 -0.9145 42 1 3.8434 4.7572 -0.9043 43 1 3.7770 3.3258 -1.9606 44 1 4.0909 2.8434 2.2790 45 1 4.0267 4.4755 1.5711 46 1 2.5767 3.4436 1.5613 47 1 5.8995 2.5658 -0.9847 48 1 5.9756 3.9008 0.1901 49 1 6.0294 2.2138 0.7552 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451774162.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:20 Heat of formation + Delta-G solvation = -99.340889 kcal Electronic energy + Delta-G solvation = -27409.841695 eV Core-core repulsion = 23884.058182 eV Total energy + Delta-G solvation = -3525.783513 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.00616 -38.56030 -37.81866 -36.71691 -35.35355 -34.09140 -33.77725 -29.88311 -29.34558 -28.09730 -27.59383 -27.48052 -24.59116 -22.96804 -22.01975 -21.42277 -20.24498 -19.74171 -18.44209 -18.22915 -17.20105 -16.87853 -16.55844 -16.11109 -15.89595 -15.56064 -15.53926 -15.18238 -14.90681 -14.51312 -14.04377 -13.80539 -13.68444 -13.64720 -13.19635 -13.10644 -13.00255 -12.87580 -12.86265 -12.76850 -12.67652 -12.59566 -12.46637 -12.29384 -12.23479 -12.07519 -12.03889 -11.80944 -11.74206 -11.54245 -11.41981 -11.30475 -11.20722 -10.95772 -10.52931 -10.22143 -9.82874 -8.19649 -6.34509 -0.43701 1.33647 1.38719 1.49656 2.10286 2.38333 3.00228 3.07170 3.37392 3.53812 3.64227 3.90378 3.97746 4.07201 4.19633 4.26617 4.33530 4.37464 4.43054 4.51776 4.58077 4.67869 4.73144 4.75546 4.85492 4.91366 4.93682 4.98146 5.01273 5.06477 5.11131 5.12984 5.19148 5.22062 5.23087 5.30735 5.38567 5.43547 5.45377 5.48350 5.56150 5.61570 5.66500 5.68737 5.72419 6.21994 6.25039 6.71563 7.37918 8.86809 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015494 B = 0.005125 C = 0.004772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.710468 B = 5461.595298 C = 5865.801451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.140 4.140 3 C -0.122 4.122 4 C 0.154 3.846 5 H 0.079 0.921 6 N -1.107 6.107 7 S 2.619 3.381 8 O -0.983 6.983 9 O -1.003 7.003 10 C -0.547 4.547 11 C 0.010 3.990 12 C -0.530 4.530 13 H 0.045 0.955 14 C 0.044 3.956 15 N -0.890 5.890 16 Si 0.930 3.070 17 H -0.275 1.275 18 H -0.269 1.269 19 H -0.276 1.276 20 C -0.196 4.196 21 C -0.135 4.135 22 C -0.075 4.075 23 C -0.142 4.142 24 C -0.141 4.141 25 C -0.141 4.141 26 H 0.042 0.958 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.046 0.954 30 H 0.059 0.941 31 H 0.099 0.901 32 H 0.083 0.917 33 H 0.418 0.582 34 H 0.120 0.880 35 H 0.129 0.871 36 H 0.265 0.735 37 H 0.079 0.921 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.065 0.935 41 H 0.075 0.925 42 H 0.060 0.940 43 H 0.046 0.954 44 H 0.054 0.946 45 H 0.064 0.936 46 H 0.076 0.924 47 H 0.035 0.965 48 H 0.060 0.940 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.735 16.394 6.181 19.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.178 4.178 3 C -0.160 4.160 4 C 0.048 3.952 5 H 0.097 0.903 6 N -0.867 5.867 7 S 2.716 3.284 8 O -0.973 6.973 9 O -0.993 6.993 10 C -0.679 4.679 11 C 0.008 3.992 12 C -0.567 4.567 13 H 0.063 0.937 14 C -0.159 4.159 15 N -0.527 5.527 16 Si 0.756 3.244 17 H -0.200 1.200 18 H -0.195 1.195 19 H -0.202 1.202 20 C -0.233 4.233 21 C -0.174 4.174 22 C -0.077 4.077 23 C -0.199 4.199 24 C -0.199 4.199 25 C -0.199 4.199 26 H 0.062 0.938 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.118 0.882 32 H 0.102 0.898 33 H 0.254 0.746 34 H 0.138 0.862 35 H 0.147 0.853 36 H 0.074 0.926 37 H 0.098 0.902 38 H 0.118 0.882 39 H 0.105 0.895 40 H 0.084 0.916 41 H 0.094 0.906 42 H 0.079 0.921 43 H 0.065 0.935 44 H 0.073 0.927 45 H 0.084 0.916 46 H 0.095 0.905 47 H 0.054 0.946 48 H 0.079 0.921 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.992 16.298 5.873 18.682 hybrid contribution -0.170 -1.206 -1.155 1.679 sum -7.162 15.092 4.718 17.358 Atomic orbital electron populations 1.21718 0.94870 1.01403 1.02454 1.21713 0.96962 0.97475 1.01625 1.22080 0.92664 0.96698 1.04583 1.21107 0.95418 0.94396 0.84317 0.90258 1.55543 1.63697 1.52746 1.14710 1.04429 0.74874 0.74772 0.74315 1.93492 1.51845 1.77023 1.74919 1.93477 1.86027 1.84029 1.35740 1.29887 1.11054 1.13450 1.13519 1.18396 0.95689 0.95097 0.89988 1.20726 1.03814 1.24162 1.08035 0.93655 1.25464 0.94537 0.96551 0.99374 1.70036 1.13969 1.28456 1.40217 0.85926 0.78680 0.78500 0.81326 1.20019 1.19451 1.20184 1.23200 0.94680 1.01852 1.03549 1.22465 0.98657 0.95961 1.00346 1.20887 0.95098 0.94185 0.97537 1.21924 1.01578 0.99228 0.97202 1.21932 1.02411 1.01067 0.94487 1.21902 0.95342 1.01162 1.01459 0.93833 0.91321 0.92265 0.93556 0.92252 0.88226 0.89812 0.74585 0.86194 0.85313 0.92604 0.90212 0.88240 0.89490 0.91632 0.90611 0.92051 0.93478 0.92726 0.91649 0.90494 0.94603 0.92087 0.93112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 9.91 71.98 0.71 -2.04 16 2 C -0.14 -3.05 5.40 30.60 0.17 -2.89 16 3 C -0.12 -2.09 4.10 30.59 0.13 -1.96 16 4 C 0.15 3.41 1.40 44.99 0.06 3.48 16 5 H 0.08 1.83 6.98 -2.39 -0.02 1.81 16 6 N -1.11 -31.07 3.63 -169.39 -0.61 -31.68 16 7 S 2.62 104.34 5.05 -56.49 -0.29 104.06 16 8 O -0.98 -41.26 15.11 -127.65 -1.93 -43.19 16 9 O -1.00 -49.32 17.56 -127.65 -2.24 -51.57 16 10 C -0.55 -22.24 5.11 71.98 0.37 -21.87 16 11 C 0.01 0.50 1.36 -52.93 -0.07 0.43 16 12 C -0.53 -29.73 7.98 25.60 0.20 -29.52 16 13 H 0.05 2.67 7.82 -2.91 -0.02 2.64 16 14 C 0.04 2.42 5.44 84.65 0.46 2.88 16 15 N -0.89 -49.33 12.85 21.45 0.28 -49.06 16 16 Si 0.93 45.00 29.54 68.60 2.03 47.02 16 17 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 18 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 19 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 20 C -0.20 -8.39 9.96 30.60 0.30 -8.08 16 21 C -0.14 -6.06 9.39 30.59 0.29 -5.77 16 22 C -0.08 -1.47 0.62 -52.18 -0.03 -1.50 16 23 C -0.14 -2.33 7.86 71.98 0.57 -1.76 16 24 C -0.14 -2.09 8.22 71.98 0.59 -1.50 16 25 C -0.14 -3.60 6.98 71.98 0.50 -3.10 16 26 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.05 1.22 6.85 -2.39 -0.02 1.20 16 30 H 0.06 1.34 7.85 -2.39 -0.02 1.32 16 31 H 0.10 1.27 6.32 -2.39 -0.02 1.25 16 32 H 0.08 1.27 6.65 -2.39 -0.02 1.25 16 33 H 0.42 10.45 8.09 -96.75 -0.78 9.67 16 34 H 0.12 5.20 7.47 -2.39 -0.02 5.18 16 35 H 0.13 4.24 7.00 -2.39 -0.02 4.22 16 36 H 0.26 13.92 8.32 -92.71 -0.77 13.15 16 37 H 0.08 3.46 8.14 -2.38 -0.02 3.44 16 38 H 0.10 3.72 8.14 -2.39 -0.02 3.70 16 39 H 0.09 3.45 8.14 -2.39 -0.02 3.43 16 40 H 0.07 3.19 8.14 -2.38 -0.02 3.17 16 41 H 0.08 0.97 6.47 -2.39 -0.02 0.95 16 42 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.05 0.86 7.18 -2.39 -0.02 0.84 16 44 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.08 0.86 6.44 -2.39 -0.02 0.84 16 47 H 0.03 1.05 7.07 -2.39 -0.02 1.04 16 48 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 49 H 0.05 1.47 7.27 -2.39 -0.02 1.45 16 Total: -1.00 -68.77 386.15 1.61 -67.16 By element: Atomic # 1 Polarization: 30.34 SS G_CDS: 0.13 Total: 30.47 kcal Atomic # 6 Polarization: -77.46 SS G_CDS: 4.25 Total: -73.21 kcal Atomic # 7 Polarization: -80.40 SS G_CDS: -0.34 Total: -80.74 kcal Atomic # 8 Polarization: -90.58 SS G_CDS: -4.17 Total: -94.76 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.02 kcal Atomic # 16 Polarization: 104.34 SS G_CDS: -0.29 Total: 104.06 kcal Total: -68.77 1.61 -67.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451774162.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.178 kcal (2) G-P(sol) polarization free energy of solvation -68.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds