Wall clock time and date at job start Tue Mar 31 2020 12:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.46984 * 2 1 4 4 C 1.52997 * 109.47000 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.47301 * 55.00293 * 4 3 2 6 6 N 1.46504 * 109.47092 * 295.00135 * 4 3 2 7 7 S 1.65597 * 120.00114 * 114.14427 * 6 4 3 8 8 O 1.42101 * 104.27741 * 177.67441 * 7 6 4 9 9 O 1.42097 * 104.27550 * 305.53716 * 7 6 4 10 10 C 1.81404 * 104.44891 * 61.60848 * 7 6 4 11 11 C 1.53000 * 109.47086 * 175.88760 * 10 7 6 12 12 C 1.50696 * 115.55162 * 65.20268 * 11 10 7 13 13 H 1.08005 * 119.99833 * 264.87898 * 12 11 10 14 14 C 1.37877 * 120.00259 * 84.87931 * 12 11 10 15 15 N 1.31513 * 120.00083 * 2.09915 * 14 12 11 16 16 Si 1.86803 * 120.00293 * 182.09679 * 14 12 11 17 17 H 1.48494 * 109.47259 * 89.99894 * 16 14 12 18 18 H 1.48494 * 109.47056 * 210.00459 * 16 14 12 19 19 H 1.48499 * 109.46787 * 330.00254 * 16 14 12 20 20 C 1.53005 * 117.49660 * 279.52902 * 11 10 7 21 21 C 1.53003 * 117.49581 * 210.87010 * 11 10 7 22 22 C 1.53002 * 109.47161 * 175.00422 * 4 3 2 23 23 C 1.52995 * 109.47208 * 54.68884 * 22 4 3 24 24 C 1.53001 * 109.47149 * 174.68912 * 22 4 3 25 25 C 1.52998 * 109.46723 * 294.68831 * 22 4 3 26 26 H 1.08996 * 109.46863 * 300.00135 * 1 2 3 27 27 H 1.09001 * 109.46960 * 59.99527 * 1 2 3 28 28 H 1.08997 * 109.46994 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47142 * 120.00109 * 2 1 3 30 30 H 1.08994 * 109.46948 * 240.00409 * 2 1 3 31 31 H 1.09001 * 109.47658 * 300.00045 * 3 2 1 32 32 H 1.09005 * 109.47396 * 60.00341 * 3 2 1 33 33 H 0.96999 * 119.99701 * 294.14444 * 6 4 3 34 34 H 1.08998 * 109.47042 * 295.88679 * 10 7 6 35 35 H 1.09005 * 109.47086 * 55.88320 * 10 7 6 36 36 H 0.96996 * 120.00271 * 185.02078 * 15 14 12 37 37 H 1.08991 * 117.49758 * 0.02562 * 20 11 10 38 38 H 1.08995 * 117.49707 * 145.02288 * 20 11 10 39 39 H 1.08996 * 117.49840 * 214.97653 * 21 11 10 40 40 H 1.09001 * 117.49928 * 359.97438 * 21 11 10 41 41 H 1.08999 * 109.47166 * 60.00517 * 23 22 4 42 42 H 1.09006 * 109.47086 * 180.02562 * 23 22 4 43 43 H 1.09001 * 109.47076 * 299.99935 * 23 22 4 44 44 H 1.08997 * 109.46987 * 60.21297 * 24 22 4 45 45 H 1.08998 * 109.47277 * 180.20556 * 24 22 4 46 46 H 1.08999 * 109.47393 * 300.20947 * 24 22 4 47 47 H 1.09001 * 109.47354 * 60.00191 * 25 22 4 48 48 H 1.09006 * 109.47003 * 179.97438 * 25 22 4 49 49 H 1.08999 * 109.47285 * 299.99446 * 25 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9330 0.8533 -0.8427 6 7 4.0589 0.8586 1.2509 7 16 4.8879 -0.5748 1.2275 8 8 5.2439 -0.7959 2.5854 9 8 4.0223 -1.4691 0.5421 10 6 6.3636 -0.2279 0.2311 11 6 7.2718 -1.4592 0.2191 12 6 6.7047 -2.6786 -0.4609 13 1 6.2030 -3.4373 0.1215 14 6 6.8262 -2.8256 -1.8264 15 7 7.4730 -1.9223 -2.5301 16 14 6.0723 -4.3081 -2.6770 17 1 4.6804 -3.9898 -3.0850 18 1 6.8746 -4.6503 -3.8787 19 1 6.0626 -5.4626 -1.7431 20 6 8.1741 -1.6833 1.4343 21 6 8.7793 -1.2238 0.1054 22 6 4.0800 2.8796 -0.1263 23 6 3.4644 3.7378 0.9806 24 6 5.6042 2.8932 0.0059 25 6 3.6813 3.4446 -1.4910 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5138 0.8899 30 1 1.8933 -0.5137 -0.8900 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 3.8969 1.3115 2.0932 34 1 6.0647 0.0131 -0.7890 35 1 6.9021 0.6167 0.6611 36 1 7.4965 -1.9867 -3.4976 37 1 8.1203 -0.9539 2.2424 38 1 8.3577 -2.7127 1.7417 39 1 9.3610 -1.9512 -0.4608 40 1 9.1240 -0.1919 0.0388 41 1 3.7484 3.3352 1.9529 42 1 3.8273 4.7617 0.8909 43 1 2.3785 3.7281 0.8865 44 1 6.0429 2.2849 -0.7849 45 1 5.9672 3.9174 -0.0799 46 1 5.8884 2.4872 0.9767 47 1 2.5954 3.4349 -1.5852 48 1 4.0442 4.4686 -1.5804 49 1 4.1200 2.8333 -2.2796 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451774164.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:25 Heat of formation + Delta-G solvation = -80.174650 kcal Electronic energy + Delta-G solvation = -27469.807622 eV Core-core repulsion = 23944.855220 eV Total energy + Delta-G solvation = -3524.952402 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.04886 -36.73986 -36.19200 -35.06994 -34.27674 -32.65609 -32.01677 -28.65553 -28.09891 -27.32038 -26.67821 -25.42034 -23.61358 -21.17417 -20.86878 -19.74250 -18.83687 -18.64251 -16.84381 -16.39504 -16.01642 -15.20653 -14.91467 -14.79215 -14.56132 -14.35820 -14.25064 -13.81059 -13.63291 -13.16952 -13.09633 -12.67872 -12.24146 -12.15838 -11.94662 -11.83905 -11.80173 -11.66329 -11.41165 -11.28037 -11.22213 -11.13050 -11.02228 -10.91256 -10.82384 -10.71735 -10.66004 -10.52511 -10.42336 -10.29189 -10.24933 -10.03273 -9.63248 -9.05392 -9.01034 -8.51400 -8.05450 -6.12241 -4.23114 1.12403 3.32245 3.37589 3.43308 3.50594 4.39162 4.51132 4.61397 4.78734 4.88841 5.05410 5.16617 5.19917 5.21640 5.23599 5.34253 5.42603 5.51255 5.57098 5.63459 5.66082 5.74440 5.79641 5.83917 5.91361 5.95350 5.97860 6.00454 6.03541 6.07799 6.16915 6.24471 6.25662 6.32596 6.37357 6.41077 6.44719 6.62610 6.64831 6.74590 6.76308 7.01674 7.23954 7.37181 7.46116 7.81264 8.22096 8.82744 9.48214 10.95280 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012467 B = 0.005793 C = 0.005178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.456369 B = 4831.885141 C = 5405.716969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.128 4.128 3 C -0.128 4.128 4 C 0.163 3.837 5 H 0.090 0.910 6 N -1.123 6.123 7 S 2.603 3.397 8 O -0.979 6.979 9 O -0.944 6.944 10 C -0.554 4.554 11 C 0.041 3.959 12 C -0.510 4.510 13 H 0.067 0.933 14 C 0.081 3.919 15 N -0.875 5.875 16 Si 0.889 3.111 17 H -0.274 1.274 18 H -0.287 1.287 19 H -0.270 1.270 20 C -0.212 4.212 21 C -0.134 4.134 22 C -0.078 4.078 23 C -0.142 4.142 24 C -0.151 4.151 25 C -0.144 4.144 26 H 0.047 0.953 27 H 0.048 0.952 28 H 0.051 0.949 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.407 0.593 34 H 0.129 0.871 35 H 0.101 0.899 36 H 0.262 0.738 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.064 0.936 41 H 0.055 0.945 42 H 0.052 0.948 43 H 0.058 0.942 44 H 0.064 0.936 45 H 0.054 0.946 46 H 0.058 0.942 47 H 0.058 0.942 48 H 0.055 0.945 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.121 12.500 3.198 15.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.166 4.166 3 C -0.167 4.167 4 C 0.055 3.945 5 H 0.108 0.892 6 N -0.879 5.879 7 S 2.700 3.300 8 O -0.970 6.970 9 O -0.934 6.934 10 C -0.687 4.687 11 C 0.038 3.962 12 C -0.547 4.547 13 H 0.085 0.915 14 C -0.123 4.123 15 N -0.511 5.511 16 Si 0.716 3.284 17 H -0.200 1.200 18 H -0.212 1.212 19 H -0.195 1.195 20 C -0.249 4.249 21 C -0.174 4.174 22 C -0.079 4.079 23 C -0.199 4.199 24 C -0.208 4.208 25 C -0.202 4.202 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.240 0.760 34 H 0.147 0.853 35 H 0.119 0.881 36 H 0.071 0.929 37 H 0.092 0.908 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.083 0.917 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.077 0.923 44 H 0.083 0.917 45 H 0.073 0.927 46 H 0.077 0.923 47 H 0.077 0.923 48 H 0.074 0.926 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.294 11.608 3.277 14.638 hybrid contribution 0.015 0.062 -0.644 0.647 sum -8.278 11.670 2.633 14.548 Atomic orbital electron populations 1.21768 0.96717 1.01321 1.00846 1.21588 0.94687 0.96169 1.04157 1.22067 0.94695 0.97790 1.02126 1.20805 0.94240 0.93407 0.86034 0.89185 1.56028 1.73158 1.44884 1.13822 1.05229 0.76693 0.72903 0.75158 1.93500 1.85217 1.84039 1.34221 1.93553 1.62809 1.61035 1.75998 1.30077 1.17593 1.06721 1.14292 1.18290 0.89081 0.91830 0.96951 1.20528 1.37720 1.03970 0.92482 0.91469 1.24925 0.93621 0.96396 0.97370 1.70008 1.39640 1.35155 1.06289 0.86613 0.79529 0.83222 0.79023 1.19987 1.21246 1.19493 1.23206 1.08978 1.01181 0.91538 1.22511 0.97884 0.99302 0.97662 1.20878 0.96162 0.94938 0.95964 1.21911 1.00725 0.99090 0.98179 1.22042 0.94262 1.01926 1.02575 1.21929 1.01463 1.00820 0.95972 0.93388 0.93289 0.92942 0.90981 0.91143 0.91129 0.91542 0.75988 0.85305 0.88102 0.92865 0.90816 0.89634 0.89364 0.91705 0.92592 0.92860 0.92263 0.91665 0.92673 0.92325 0.92262 0.92564 0.92135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.91 37.16 0.37 -1.39 16 2 C -0.13 -1.83 4.94 -26.73 -0.13 -1.96 16 3 C -0.13 -1.50 4.09 -26.73 -0.11 -1.61 16 4 C 0.16 2.11 1.39 -67.93 -0.09 2.02 16 5 H 0.09 1.32 7.38 -51.93 -0.38 0.94 16 6 N -1.12 -16.09 3.67 -4.89 -0.02 -16.10 16 7 S 2.60 51.10 5.05 -107.50 -0.54 50.56 16 8 O -0.98 -21.41 18.08 -57.54 -1.04 -22.45 16 9 O -0.94 -21.42 15.30 -57.54 -0.88 -22.30 16 10 C -0.55 -11.25 4.66 37.16 0.17 -11.08 16 11 C 0.04 0.98 1.39 -155.66 -0.22 0.76 16 12 C -0.51 -13.82 8.10 -34.44 -0.28 -14.10 16 13 H 0.07 1.88 7.81 -52.48 -0.41 1.47 16 14 C 0.08 2.20 5.43 -17.82 -0.10 2.10 16 15 N -0.88 -23.74 12.71 55.43 0.70 -23.03 16 16 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 17 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 20 C -0.21 -4.69 9.96 -26.69 -0.27 -4.95 16 21 C -0.13 -3.07 9.21 -26.69 -0.25 -3.31 16 22 C -0.08 -0.84 0.62 -154.51 -0.10 -0.93 16 23 C -0.14 -1.30 7.84 37.16 0.29 -1.01 16 24 C -0.15 -1.76 7.23 37.16 0.27 -1.49 16 25 C -0.14 -1.41 8.24 37.16 0.31 -1.10 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.07 1.17 6.55 -51.93 -0.34 0.83 16 30 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.07 0.73 6.36 -51.93 -0.33 0.40 16 32 H 0.07 0.70 6.65 -51.93 -0.35 0.35 16 33 H 0.41 4.97 7.61 -34.47 -0.26 4.71 16 34 H 0.13 2.67 7.39 -51.92 -0.38 2.29 16 35 H 0.10 1.76 6.86 -51.92 -0.36 1.40 16 36 H 0.26 6.79 8.32 -40.82 -0.34 6.45 16 37 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 38 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 39 H 0.09 2.15 8.14 -51.93 -0.42 1.73 16 40 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 41 H 0.06 0.51 6.93 -51.93 -0.36 0.15 16 42 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.06 0.50 6.46 -51.93 -0.34 0.17 16 44 H 0.06 0.85 7.26 -51.93 -0.38 0.47 16 45 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.06 0.69 6.70 -51.93 -0.35 0.34 16 47 H 0.06 0.52 6.47 -51.93 -0.34 0.18 16 48 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 385.12 15.07 5.80 5.80 Total: -1.00 -31.06 385.12 -9.90 -40.96 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -8.78 Total: 8.23 kcal Atomic # 6 Polarization: -37.93 SS G_CDS: -0.13 Total: -38.06 kcal Atomic # 7 Polarization: -39.82 SS G_CDS: 0.69 Total: -39.13 kcal Atomic # 8 Polarization: -42.82 SS G_CDS: -1.92 Total: -44.74 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: 51.10 SS G_CDS: -0.54 Total: 50.56 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.06 -9.90 -40.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451774164.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.212 kcal (2) G-P(sol) polarization free energy of solvation -31.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds