Wall clock time and date at job start Tue Mar 31 2020 12:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.46984 * 2 1 4 4 C 1.52997 * 109.47000 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.47301 * 55.00293 * 4 3 2 6 6 N 1.46504 * 109.47092 * 295.00135 * 4 3 2 7 7 S 1.65597 * 120.00114 * 114.14427 * 6 4 3 8 8 O 1.42101 * 104.27741 * 177.67441 * 7 6 4 9 9 O 1.42097 * 104.27550 * 305.53716 * 7 6 4 10 10 C 1.81404 * 104.44891 * 61.60848 * 7 6 4 11 11 C 1.53000 * 109.47086 * 175.88760 * 10 7 6 12 12 C 1.50696 * 115.55162 * 65.20268 * 11 10 7 13 13 H 1.08005 * 119.99833 * 264.87898 * 12 11 10 14 14 C 1.37877 * 120.00259 * 84.87931 * 12 11 10 15 15 N 1.31513 * 120.00083 * 2.09915 * 14 12 11 16 16 Si 1.86803 * 120.00293 * 182.09679 * 14 12 11 17 17 H 1.48494 * 109.47259 * 89.99894 * 16 14 12 18 18 H 1.48494 * 109.47056 * 210.00459 * 16 14 12 19 19 H 1.48499 * 109.46787 * 330.00254 * 16 14 12 20 20 C 1.53005 * 117.49660 * 279.52902 * 11 10 7 21 21 C 1.53003 * 117.49581 * 210.87010 * 11 10 7 22 22 C 1.53002 * 109.47161 * 175.00422 * 4 3 2 23 23 C 1.52995 * 109.47208 * 54.68884 * 22 4 3 24 24 C 1.53001 * 109.47149 * 174.68912 * 22 4 3 25 25 C 1.52998 * 109.46723 * 294.68831 * 22 4 3 26 26 H 1.08996 * 109.46863 * 300.00135 * 1 2 3 27 27 H 1.09001 * 109.46960 * 59.99527 * 1 2 3 28 28 H 1.08997 * 109.46994 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47142 * 120.00109 * 2 1 3 30 30 H 1.08994 * 109.46948 * 240.00409 * 2 1 3 31 31 H 1.09001 * 109.47658 * 300.00045 * 3 2 1 32 32 H 1.09005 * 109.47396 * 60.00341 * 3 2 1 33 33 H 0.96999 * 119.99701 * 294.14444 * 6 4 3 34 34 H 1.08998 * 109.47042 * 295.88679 * 10 7 6 35 35 H 1.09005 * 109.47086 * 55.88320 * 10 7 6 36 36 H 0.96996 * 120.00271 * 185.02078 * 15 14 12 37 37 H 1.08991 * 117.49758 * 0.02562 * 20 11 10 38 38 H 1.08995 * 117.49707 * 145.02288 * 20 11 10 39 39 H 1.08996 * 117.49840 * 214.97653 * 21 11 10 40 40 H 1.09001 * 117.49928 * 359.97438 * 21 11 10 41 41 H 1.08999 * 109.47166 * 60.00517 * 23 22 4 42 42 H 1.09006 * 109.47086 * 180.02562 * 23 22 4 43 43 H 1.09001 * 109.47076 * 299.99935 * 23 22 4 44 44 H 1.08997 * 109.46987 * 60.21297 * 24 22 4 45 45 H 1.08998 * 109.47277 * 180.20556 * 24 22 4 46 46 H 1.08999 * 109.47393 * 300.20947 * 24 22 4 47 47 H 1.09001 * 109.47354 * 60.00191 * 25 22 4 48 48 H 1.09006 * 109.47003 * 179.97438 * 25 22 4 49 49 H 1.08999 * 109.47285 * 299.99446 * 25 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9330 0.8533 -0.8427 6 7 4.0589 0.8586 1.2509 7 16 4.8879 -0.5748 1.2275 8 8 5.2439 -0.7959 2.5854 9 8 4.0223 -1.4691 0.5421 10 6 6.3636 -0.2279 0.2311 11 6 7.2718 -1.4592 0.2191 12 6 6.7047 -2.6786 -0.4609 13 1 6.2030 -3.4373 0.1215 14 6 6.8262 -2.8256 -1.8264 15 7 7.4730 -1.9223 -2.5301 16 14 6.0723 -4.3081 -2.6770 17 1 4.6804 -3.9898 -3.0850 18 1 6.8746 -4.6503 -3.8787 19 1 6.0626 -5.4626 -1.7431 20 6 8.1741 -1.6833 1.4343 21 6 8.7793 -1.2238 0.1054 22 6 4.0800 2.8796 -0.1263 23 6 3.4644 3.7378 0.9806 24 6 5.6042 2.8932 0.0059 25 6 3.6813 3.4446 -1.4910 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5138 0.8899 30 1 1.8933 -0.5137 -0.8900 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 3.8969 1.3115 2.0932 34 1 6.0647 0.0131 -0.7890 35 1 6.9021 0.6167 0.6611 36 1 7.4965 -1.9867 -3.4976 37 1 8.1203 -0.9539 2.2424 38 1 8.3577 -2.7127 1.7417 39 1 9.3610 -1.9512 -0.4608 40 1 9.1240 -0.1919 0.0388 41 1 3.7484 3.3352 1.9529 42 1 3.8273 4.7617 0.8909 43 1 2.3785 3.7281 0.8865 44 1 6.0429 2.2849 -0.7849 45 1 5.9672 3.9174 -0.0799 46 1 5.8884 2.4872 0.9767 47 1 2.5954 3.4349 -1.5852 48 1 4.0442 4.4686 -1.5804 49 1 4.1200 2.8333 -2.2796 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451774164.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:24 Heat of formation + Delta-G solvation = -99.018521 kcal Electronic energy + Delta-G solvation = -27470.624754 eV Core-core repulsion = 23944.855220 eV Total energy + Delta-G solvation = -3525.769534 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.02699 -38.57070 -37.86847 -36.73778 -35.28108 -34.07359 -33.80877 -30.06492 -29.31105 -28.09204 -27.64302 -27.39685 -24.62553 -22.98378 -21.91404 -21.53574 -20.24161 -19.80156 -18.36794 -18.24546 -17.22464 -16.80133 -16.69606 -16.15555 -15.89772 -15.61612 -15.38867 -15.23575 -14.85250 -14.60461 -14.10965 -13.81529 -13.69576 -13.66233 -13.19004 -13.07932 -12.98391 -12.89401 -12.87491 -12.81914 -12.68079 -12.62899 -12.45660 -12.30962 -12.24870 -12.17107 -12.01104 -11.78597 -11.72035 -11.55769 -11.42717 -11.30386 -11.22590 -10.97859 -10.50039 -10.25032 -9.82950 -8.18987 -6.33542 -0.45485 1.36569 1.39944 1.47663 2.09093 2.39189 2.96100 3.09057 3.38660 3.51637 3.62787 3.90004 3.95614 4.04803 4.22467 4.26230 4.33183 4.38821 4.42223 4.49753 4.58090 4.64913 4.69719 4.75444 4.84278 4.89001 4.91091 4.96939 5.00519 5.04177 5.07830 5.12465 5.17235 5.19811 5.21848 5.27246 5.33743 5.42885 5.45072 5.47681 5.58810 5.61162 5.64068 5.67150 5.71337 6.22830 6.27632 6.72382 7.38595 8.87990 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012467 B = 0.005793 C = 0.005178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.456369 B = 4831.885141 C = 5405.716969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.134 4.134 3 C -0.122 4.122 4 C 0.156 3.844 5 H 0.066 0.934 6 N -1.103 6.103 7 S 2.619 3.381 8 O -1.003 7.003 9 O -0.981 6.981 10 C -0.548 4.548 11 C 0.011 3.989 12 C -0.528 4.528 13 H 0.046 0.954 14 C 0.046 3.954 15 N -0.890 5.890 16 Si 0.930 3.070 17 H -0.276 1.276 18 H -0.274 1.274 19 H -0.273 1.273 20 C -0.202 4.202 21 C -0.131 4.131 22 C -0.071 4.071 23 C -0.141 4.141 24 C -0.156 4.156 25 C -0.144 4.144 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.043 0.957 29 H 0.046 0.954 30 H 0.041 0.959 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.421 0.579 34 H 0.120 0.880 35 H 0.130 0.870 36 H 0.264 0.736 37 H 0.096 0.904 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.086 0.914 41 H 0.056 0.944 42 H 0.065 0.935 43 H 0.071 0.929 44 H 0.045 0.955 45 H 0.071 0.929 46 H 0.055 0.945 47 H 0.072 0.928 48 H 0.070 0.930 49 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.119 14.989 3.570 17.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.171 4.171 3 C -0.160 4.160 4 C 0.049 3.951 5 H 0.085 0.915 6 N -0.864 5.864 7 S 2.715 3.285 8 O -0.993 6.993 9 O -0.971 6.971 10 C -0.681 4.681 11 C 0.009 3.991 12 C -0.565 4.565 13 H 0.064 0.936 14 C -0.157 4.157 15 N -0.527 5.527 16 Si 0.755 3.245 17 H -0.202 1.202 18 H -0.199 1.199 19 H -0.197 1.197 20 C -0.239 4.239 21 C -0.170 4.170 22 C -0.073 4.073 23 C -0.198 4.198 24 C -0.214 4.214 25 C -0.202 4.202 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.110 0.890 32 H 0.107 0.893 33 H 0.257 0.743 34 H 0.138 0.862 35 H 0.148 0.852 36 H 0.074 0.926 37 H 0.115 0.885 38 H 0.098 0.902 39 H 0.085 0.915 40 H 0.105 0.895 41 H 0.075 0.925 42 H 0.084 0.916 43 H 0.090 0.910 44 H 0.064 0.936 45 H 0.090 0.910 46 H 0.074 0.926 47 H 0.091 0.909 48 H 0.089 0.911 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -9.280 14.093 3.656 17.266 hybrid contribution 0.322 -0.700 -0.748 1.075 sum -8.958 13.393 2.908 16.373 Atomic orbital electron populations 1.21739 0.94656 1.01395 1.02474 1.21590 0.96620 0.97418 1.01520 1.22067 0.93415 0.96364 1.04193 1.21026 0.95315 0.94512 0.84280 0.91549 1.55487 1.72124 1.43504 1.15278 1.04462 0.76361 0.73568 0.74078 1.93456 1.85624 1.85050 1.35198 1.93513 1.63683 1.63295 1.76575 1.29949 1.17733 1.06064 1.14325 1.18423 0.90149 0.92312 0.98239 1.20675 1.37913 1.04975 0.92945 0.93595 1.25433 0.94129 0.98313 0.97850 1.70044 1.40128 1.36014 1.06471 0.85983 0.78932 0.80994 0.78560 1.20171 1.19894 1.19730 1.23250 1.07451 1.01589 0.91659 1.22442 0.96879 0.99905 0.97765 1.20835 0.95560 0.93434 0.97480 1.21922 1.01403 0.99298 0.97215 1.22096 0.95027 1.02593 1.01649 1.21945 1.02314 1.01220 0.94712 0.91702 0.91632 0.93767 0.93539 0.94024 0.88989 0.89330 0.74283 0.86155 0.85218 0.92636 0.88527 0.90173 0.91540 0.89550 0.92530 0.91575 0.91046 0.93573 0.90991 0.92607 0.90929 0.91124 0.93578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.21 9.91 71.98 0.71 -2.50 16 2 C -0.13 -3.78 4.94 30.60 0.15 -3.62 16 3 C -0.12 -2.61 4.09 30.59 0.12 -2.48 16 4 C 0.16 3.86 1.39 44.99 0.06 3.92 16 5 H 0.07 1.98 7.38 -2.39 -0.02 1.97 16 6 N -1.10 -30.58 3.67 -169.38 -0.62 -31.20 16 7 S 2.62 103.65 5.05 -56.49 -0.29 103.37 16 8 O -1.00 -43.66 18.08 -127.65 -2.31 -45.97 16 9 O -0.98 -46.12 15.30 -127.65 -1.95 -48.07 16 10 C -0.55 -22.27 4.66 71.98 0.34 -21.94 16 11 C 0.01 0.53 1.39 -52.93 -0.07 0.45 16 12 C -0.53 -29.37 8.10 25.60 0.21 -29.16 16 13 H 0.05 2.68 7.81 -2.91 -0.02 2.65 16 14 C 0.05 2.50 5.43 84.65 0.46 2.96 16 15 N -0.89 -48.85 12.71 21.45 0.27 -48.58 16 16 Si 0.93 44.49 29.54 68.60 2.03 46.52 16 17 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 18 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 19 H -0.27 -13.02 7.11 99.48 0.71 -12.31 16 20 C -0.20 -8.87 9.96 30.62 0.30 -8.57 16 21 C -0.13 -5.94 9.21 30.62 0.28 -5.66 16 22 C -0.07 -1.36 0.62 -52.18 -0.03 -1.39 16 23 C -0.14 -2.06 7.84 71.98 0.56 -1.49 16 24 C -0.16 -3.35 7.23 71.98 0.52 -2.83 16 25 C -0.14 -2.45 8.24 71.98 0.59 -1.85 16 26 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.06 1.22 8.14 -2.39 -0.02 1.21 16 28 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.05 1.53 6.55 -2.39 -0.02 1.51 16 30 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.09 1.61 6.36 -2.39 -0.02 1.60 16 32 H 0.09 1.54 6.65 -2.38 -0.02 1.52 16 33 H 0.42 9.50 7.61 -96.75 -0.74 8.77 16 34 H 0.12 5.10 7.39 -2.39 -0.02 5.08 16 35 H 0.13 4.37 6.86 -2.39 -0.02 4.35 16 36 H 0.26 13.81 8.32 -92.71 -0.77 13.04 16 37 H 0.10 3.76 8.14 -2.39 -0.02 3.74 16 38 H 0.08 3.55 8.14 -2.39 -0.02 3.53 16 39 H 0.07 3.28 8.14 -2.39 -0.02 3.26 16 40 H 0.09 3.49 8.14 -2.39 -0.02 3.47 16 41 H 0.06 0.82 6.93 -2.39 -0.02 0.81 16 42 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 43 H 0.07 0.89 6.46 -2.39 -0.02 0.87 16 44 H 0.05 1.16 7.26 -2.39 -0.02 1.14 16 45 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.05 1.20 6.70 -2.39 -0.02 1.18 16 47 H 0.07 1.03 6.47 -2.39 -0.02 1.02 16 48 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 49 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -67.94 385.12 1.52 -66.41 By element: Atomic # 1 Polarization: 31.51 SS G_CDS: 0.18 Total: 31.69 kcal Atomic # 6 Polarization: -78.38 SS G_CDS: 4.21 Total: -74.17 kcal Atomic # 7 Polarization: -79.43 SS G_CDS: -0.35 Total: -79.77 kcal Atomic # 8 Polarization: -89.78 SS G_CDS: -4.26 Total: -94.04 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Atomic # 16 Polarization: 103.65 SS G_CDS: -0.29 Total: 103.37 kcal Total: -67.94 1.52 -66.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451774164.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.604 kcal (2) G-P(sol) polarization free energy of solvation -67.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds