Wall clock time and date at job start Tue Mar 31 2020 12:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47219 * 2 1 4 4 C 1.53006 * 109.47076 * 120.00062 * 2 1 3 5 5 H 1.08997 * 113.27846 * 281.00462 * 4 2 1 6 6 C 1.53493 * 114.20491 * 54.07291 * 4 2 1 7 7 N 1.47074 * 87.98515 * 87.52242 * 6 4 2 8 8 S 1.65604 * 136.05431 * 207.08872 * 7 6 4 9 9 O 1.42095 * 104.27652 * 343.10242 * 8 7 6 10 10 O 1.42103 * 104.27285 * 215.24986 * 8 7 6 11 11 C 1.81395 * 104.45178 * 99.17892 * 8 7 6 12 12 C 1.52994 * 109.47234 * 172.59838 * 11 8 7 13 13 C 1.53001 * 109.47261 * 179.97438 * 12 11 8 14 14 C 1.50704 * 109.47305 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99406 * 0.02562 * 14 13 12 16 16 C 1.37872 * 119.99845 * 180.02562 * 14 13 12 17 17 N 1.31515 * 120.00320 * 0.02562 * 16 14 13 18 18 Si 1.86808 * 119.99746 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47149 * 89.99677 * 18 16 14 20 20 H 1.48503 * 109.46916 * 210.00029 * 18 16 14 21 21 H 1.48504 * 109.47108 * 329.99791 * 18 16 14 22 22 C 1.47063 * 87.88525 * 27.33932 * 7 6 4 23 23 H 1.08999 * 113.47004 * 87.43947 * 22 7 6 24 24 C 1.52998 * 113.47007 * 217.88186 * 22 7 6 25 25 C 1.52997 * 109.47396 * 181.38952 * 24 22 7 26 26 C 1.53005 * 109.46904 * 301.38567 * 24 22 7 27 27 H 1.08998 * 109.47650 * 299.99895 * 1 2 3 28 28 H 1.09004 * 109.46935 * 60.00173 * 1 2 3 29 29 H 1.09001 * 109.47040 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47650 * 240.00105 * 2 1 3 31 31 H 1.09005 * 109.46907 * 67.97965 * 3 2 1 32 32 H 1.09002 * 109.47711 * 187.98317 * 3 2 1 33 33 H 1.09002 * 109.46968 * 307.98591 * 3 2 1 34 34 H 1.08997 * 113.46844 * 332.74023 * 6 4 2 35 35 H 1.09000 * 113.46451 * 202.29835 * 6 4 2 36 36 H 1.09000 * 109.47028 * 52.59843 * 11 8 7 37 37 H 1.08997 * 109.46815 * 292.60145 * 11 8 7 38 38 H 1.08997 * 109.47470 * 299.99906 * 12 11 8 39 39 H 1.09000 * 109.47109 * 60.00055 * 12 11 8 40 40 H 1.08997 * 109.47119 * 300.00510 * 13 12 11 41 41 H 1.09000 * 109.46698 * 60.00191 * 13 12 11 42 42 H 0.96997 * 120.00040 * 179.97438 * 17 16 14 43 43 H 1.08996 * 109.47628 * 61.38187 * 24 22 7 44 44 H 1.08997 * 109.47500 * 185.73160 * 25 24 22 45 45 H 1.08998 * 109.46845 * 305.73204 * 25 24 22 46 46 H 1.09002 * 109.47435 * 65.72834 * 25 24 22 47 47 H 1.09003 * 109.46868 * 72.66192 * 26 24 22 48 48 H 1.08996 * 109.47279 * 192.65924 * 26 24 22 49 49 H 1.08994 * 109.47147 * 312.66908 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 2.0034 -0.1051 2.1476 6 6 1.4753 -2.1366 1.4334 7 7 2.5817 -2.6305 0.5997 8 16 2.8342 -3.9250 -0.4018 9 8 1.8063 -4.8425 -0.0544 10 8 4.2038 -4.2529 -0.2118 11 6 2.5628 -3.2665 -2.0700 12 6 2.9470 -4.3256 -3.1051 13 6 2.7174 -3.7704 -4.5123 14 6 3.0952 -4.8139 -5.5319 15 1 3.4620 -5.7769 -5.2085 16 6 2.9727 -4.5391 -6.8774 17 7 2.5265 -3.3663 -7.2711 18 14 3.4404 -5.8328 -8.1412 19 1 2.2538 -6.6679 -8.4572 20 1 3.9199 -5.1657 -9.3782 21 1 4.5194 -6.6933 -7.5928 22 6 3.3671 -1.4722 1.0517 23 1 3.9075 -1.6503 1.9813 24 6 4.2522 -0.8718 -0.0424 25 6 5.0508 0.2995 0.5332 26 6 5.2165 -1.9402 -0.5617 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.7978 1.9134 0.9528 32 1 3.1206 1.4459 -0.1427 33 1 1.5647 1.9958 -0.8100 34 1 0.4942 -2.2750 0.9792 35 1 1.5170 -2.4900 2.4637 36 1 3.1772 -2.3778 -2.2143 37 1 1.5115 -3.0050 -2.1907 38 1 3.9982 -4.5871 -2.9844 39 1 2.3326 -5.2143 -2.9609 40 1 1.6661 -3.5092 -4.6327 41 1 3.3315 -2.8816 -4.6567 42 1 2.4407 -3.1729 -8.2177 43 1 3.6270 -0.5175 -0.8619 44 1 5.6035 0.7908 -0.2675 45 1 4.3679 1.0130 0.9942 46 1 5.7498 -0.0709 1.2830 47 1 4.6677 -2.6615 -1.1671 48 1 5.9884 -1.4683 -1.1696 49 1 5.6802 -2.4519 0.2816 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451906929.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:32 Heat of formation + Delta-G solvation = -59.172813 kcal Electronic energy + Delta-G solvation = -26848.214500 eV Core-core repulsion = 23324.172805 eV Total energy + Delta-G solvation = -3524.041694 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.75595 -37.02418 -35.73102 -34.85426 -34.69735 -34.41523 -32.19138 -28.52627 -27.77793 -27.59882 -26.77011 -25.57745 -23.75777 -22.52302 -21.00067 -20.52705 -19.57107 -18.11228 -17.57315 -16.70185 -16.29624 -15.92756 -15.58536 -15.20387 -14.67900 -14.48625 -14.30768 -14.06573 -13.66708 -13.30823 -12.99769 -12.76842 -12.73367 -12.58685 -12.41350 -12.30140 -12.23280 -12.05038 -11.87889 -11.80740 -11.70154 -11.43769 -11.27164 -11.09541 -11.02159 -10.92259 -10.86223 -10.73244 -10.59736 -10.39663 -10.29148 -10.10788 -9.94610 -9.45711 -9.21212 -8.91244 -8.40624 -6.05597 -4.08566 0.43613 2.76268 3.30448 3.36506 3.40728 3.98798 4.08216 4.26144 4.31806 4.42502 4.57495 4.76207 4.83012 4.89086 5.05941 5.13064 5.18777 5.22231 5.28414 5.30863 5.35788 5.37721 5.39990 5.49623 5.53236 5.61575 5.72257 5.77426 5.78690 5.81948 5.89217 5.89551 5.98198 6.02695 6.10884 6.13791 6.20294 6.25769 6.29015 6.42379 6.53161 6.56027 6.87393 7.57074 7.67062 7.92416 8.33008 8.97524 9.56143 11.05615 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015221 B = 0.003809 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.168779 B = 7348.807935 C = 7716.731041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.081 4.081 3 C -0.156 4.156 4 C -0.116 4.116 5 H 0.092 0.908 6 C 0.128 3.872 7 N -1.041 6.041 8 S 2.617 3.383 9 O -0.965 6.965 10 O -0.952 6.952 11 C -0.610 4.610 12 C -0.104 4.104 13 C 0.032 3.968 14 C -0.526 4.526 15 H 0.058 0.942 16 C 0.058 3.942 17 N -0.895 5.895 18 Si 0.893 3.107 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.273 1.273 22 C 0.169 3.831 23 H 0.092 0.908 24 C -0.123 4.123 25 C -0.144 4.144 26 C -0.163 4.163 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.079 0.921 31 H 0.054 0.946 32 H 0.067 0.933 33 H 0.055 0.945 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.130 0.870 37 H 0.127 0.873 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.020 0.980 41 H 0.021 0.979 42 H 0.261 0.739 43 H 0.087 0.913 44 H 0.059 0.941 45 H 0.063 0.937 46 H 0.056 0.944 47 H 0.058 0.942 48 H 0.059 0.941 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.837 11.598 19.704 22.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.099 4.099 3 C -0.213 4.213 4 C -0.137 4.137 5 H 0.110 0.890 6 C 0.003 3.997 7 N -0.879 5.879 8 S 2.716 3.284 9 O -0.955 6.955 10 O -0.942 6.942 11 C -0.742 4.742 12 C -0.144 4.144 13 C -0.006 4.006 14 C -0.564 4.564 15 H 0.076 0.924 16 C -0.143 4.143 17 N -0.534 5.534 18 Si 0.721 3.279 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.197 1.197 22 C 0.063 3.937 23 H 0.110 0.890 24 C -0.142 4.142 25 C -0.202 4.202 26 C -0.221 4.221 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.097 0.903 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.148 0.852 37 H 0.145 0.855 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.038 0.962 41 H 0.039 0.961 42 H 0.071 0.929 43 H 0.105 0.895 44 H 0.078 0.922 45 H 0.081 0.919 46 H 0.075 0.925 47 H 0.077 0.923 48 H 0.078 0.922 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.614 10.599 19.724 22.400 hybrid contribution 0.049 -0.252 -1.234 1.261 sum -0.564 10.348 18.490 21.196 Atomic orbital electron populations 1.21890 0.94945 1.02054 1.01923 1.20911 0.95765 0.96062 0.97176 1.22075 1.02103 0.95411 1.01727 1.23150 0.96025 0.95251 0.99227 0.88956 1.22518 0.90994 0.91266 0.94934 1.60259 1.26023 1.42542 1.59028 1.04858 0.74191 0.72641 0.76684 1.93534 1.59712 1.59697 1.82597 1.93599 1.33968 1.81595 1.85044 1.30697 1.11396 1.12015 1.20055 1.21499 1.01083 0.94916 0.96877 1.19047 0.97483 0.96474 0.87583 1.21250 1.43860 1.00250 0.91055 0.92408 1.25006 0.95141 0.95497 0.98644 1.69956 1.46345 1.21421 1.15696 0.86568 0.78880 0.81606 0.80836 1.20563 1.21158 1.19733 1.22264 0.92372 0.82353 0.96710 0.89013 1.21721 0.97415 0.96778 0.98335 1.21840 0.99823 0.97278 1.01216 1.22345 0.99812 0.97713 1.02212 0.92596 0.92363 0.92322 0.90261 0.92733 0.91429 0.92586 0.90104 0.90123 0.85202 0.85471 0.91427 0.91924 0.96166 0.96104 0.92913 0.89517 0.92180 0.91851 0.92489 0.92309 0.92212 0.91184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 8.90 37.16 0.33 -0.86 16 2 C -0.08 -0.67 2.05 -90.62 -0.19 -0.85 16 3 C -0.16 -1.12 8.67 37.16 0.32 -0.79 16 4 C -0.12 -0.89 3.54 -89.97 -0.32 -1.21 16 5 H 0.09 0.53 8.07 -51.93 -0.42 0.11 16 6 C 0.13 1.20 8.01 -8.50 -0.07 1.13 16 7 N -1.04 -12.64 3.77 -117.69 -0.44 -13.08 16 8 S 2.62 42.17 5.06 -107.50 -0.54 41.62 16 9 O -0.96 -18.42 18.02 -57.54 -1.04 -19.45 16 10 O -0.95 -17.23 14.36 -57.54 -0.83 -18.06 16 11 C -0.61 -9.98 5.54 37.15 0.21 -9.78 16 12 C -0.10 -2.17 5.16 -26.73 -0.14 -2.31 16 13 C 0.03 0.83 4.97 -27.88 -0.14 0.69 16 14 C -0.53 -14.91 9.11 -34.44 -0.31 -15.23 16 15 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 17 N -0.90 -26.62 13.29 55.43 0.74 -25.88 16 18 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 22 C 0.17 1.63 3.30 -72.26 -0.24 1.39 16 23 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 24 C -0.12 -1.24 2.06 -90.62 -0.19 -1.42 16 25 C -0.14 -1.12 8.19 37.16 0.30 -0.81 16 26 C -0.16 -2.11 7.38 37.16 0.27 -1.83 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.48 6.27 -51.93 -0.33 0.16 16 30 H 0.08 0.78 6.30 -51.93 -0.33 0.45 16 31 H 0.05 0.33 8.08 -51.93 -0.42 -0.09 16 32 H 0.07 0.47 4.36 -51.93 -0.23 0.25 16 33 H 0.06 0.42 8.13 -51.93 -0.42 -0.01 16 34 H 0.08 0.73 6.11 -51.93 -0.32 0.42 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.13 1.93 6.35 -51.92 -0.33 1.60 16 37 H 0.13 1.90 8.14 -51.93 -0.42 1.48 16 38 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 39 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 43 H 0.09 0.88 4.91 -51.93 -0.25 0.62 16 44 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.06 0.40 6.25 -51.93 -0.32 0.08 16 46 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.06 0.87 2.85 -50.31 -0.14 0.72 16 48 H 0.06 0.72 8.08 -51.93 -0.42 0.30 16 49 H 0.07 0.94 7.63 -51.93 -0.40 0.54 16 LS Contribution 376.71 15.07 5.68 5.68 Total: -1.00 -33.90 376.71 -10.22 -44.12 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -8.52 Total: -1.31 kcal Atomic # 6 Polarization: -30.06 SS G_CDS: -0.25 Total: -30.30 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: 0.29 Total: -38.96 kcal Atomic # 8 Polarization: -35.64 SS G_CDS: -1.86 Total: -37.51 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: 42.17 SS G_CDS: -0.54 Total: 41.62 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.90 -10.22 -44.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451906929.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.053 kcal (2) G-P(sol) polarization free energy of solvation -33.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds