Wall clock time and date at job start Tue Mar 31 2020 12:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47219 * 2 1 4 4 C 1.53006 * 109.47076 * 120.00062 * 2 1 3 5 5 H 1.08997 * 113.27846 * 281.00462 * 4 2 1 6 6 C 1.53493 * 114.20491 * 54.07291 * 4 2 1 7 7 N 1.47074 * 87.98515 * 87.52242 * 6 4 2 8 8 S 1.65604 * 136.05431 * 207.08872 * 7 6 4 9 9 O 1.42095 * 104.27652 * 343.10242 * 8 7 6 10 10 O 1.42103 * 104.27285 * 215.24986 * 8 7 6 11 11 C 1.81395 * 104.45178 * 99.17892 * 8 7 6 12 12 C 1.52994 * 109.47234 * 172.59838 * 11 8 7 13 13 C 1.53001 * 109.47261 * 179.97438 * 12 11 8 14 14 C 1.50704 * 109.47305 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99406 * 0.02562 * 14 13 12 16 16 C 1.37872 * 119.99845 * 180.02562 * 14 13 12 17 17 N 1.31515 * 120.00320 * 0.02562 * 16 14 13 18 18 Si 1.86808 * 119.99746 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47149 * 89.99677 * 18 16 14 20 20 H 1.48503 * 109.46916 * 210.00029 * 18 16 14 21 21 H 1.48504 * 109.47108 * 329.99791 * 18 16 14 22 22 C 1.47063 * 87.88525 * 27.33932 * 7 6 4 23 23 H 1.08999 * 113.47004 * 87.43947 * 22 7 6 24 24 C 1.52998 * 113.47007 * 217.88186 * 22 7 6 25 25 C 1.52997 * 109.47396 * 181.38952 * 24 22 7 26 26 C 1.53005 * 109.46904 * 301.38567 * 24 22 7 27 27 H 1.08998 * 109.47650 * 299.99895 * 1 2 3 28 28 H 1.09004 * 109.46935 * 60.00173 * 1 2 3 29 29 H 1.09001 * 109.47040 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47650 * 240.00105 * 2 1 3 31 31 H 1.09005 * 109.46907 * 67.97965 * 3 2 1 32 32 H 1.09002 * 109.47711 * 187.98317 * 3 2 1 33 33 H 1.09002 * 109.46968 * 307.98591 * 3 2 1 34 34 H 1.08997 * 113.46844 * 332.74023 * 6 4 2 35 35 H 1.09000 * 113.46451 * 202.29835 * 6 4 2 36 36 H 1.09000 * 109.47028 * 52.59843 * 11 8 7 37 37 H 1.08997 * 109.46815 * 292.60145 * 11 8 7 38 38 H 1.08997 * 109.47470 * 299.99906 * 12 11 8 39 39 H 1.09000 * 109.47109 * 60.00055 * 12 11 8 40 40 H 1.08997 * 109.47119 * 300.00510 * 13 12 11 41 41 H 1.09000 * 109.46698 * 60.00191 * 13 12 11 42 42 H 0.96997 * 120.00040 * 179.97438 * 17 16 14 43 43 H 1.08996 * 109.47628 * 61.38187 * 24 22 7 44 44 H 1.08997 * 109.47500 * 185.73160 * 25 24 22 45 45 H 1.08998 * 109.46845 * 305.73204 * 25 24 22 46 46 H 1.09002 * 109.47435 * 65.72834 * 25 24 22 47 47 H 1.09003 * 109.46868 * 72.66192 * 26 24 22 48 48 H 1.08996 * 109.47279 * 192.65924 * 26 24 22 49 49 H 1.08994 * 109.47147 * 312.66908 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 2.0034 -0.1051 2.1476 6 6 1.4753 -2.1366 1.4334 7 7 2.5817 -2.6305 0.5997 8 16 2.8342 -3.9250 -0.4018 9 8 1.8063 -4.8425 -0.0544 10 8 4.2038 -4.2529 -0.2118 11 6 2.5628 -3.2665 -2.0700 12 6 2.9470 -4.3256 -3.1051 13 6 2.7174 -3.7704 -4.5123 14 6 3.0952 -4.8139 -5.5319 15 1 3.4620 -5.7769 -5.2085 16 6 2.9727 -4.5391 -6.8774 17 7 2.5265 -3.3663 -7.2711 18 14 3.4404 -5.8328 -8.1412 19 1 2.2538 -6.6679 -8.4572 20 1 3.9199 -5.1657 -9.3782 21 1 4.5194 -6.6933 -7.5928 22 6 3.3671 -1.4722 1.0517 23 1 3.9075 -1.6503 1.9813 24 6 4.2522 -0.8718 -0.0424 25 6 5.0508 0.2995 0.5332 26 6 5.2165 -1.9402 -0.5617 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.7978 1.9134 0.9528 32 1 3.1206 1.4459 -0.1427 33 1 1.5647 1.9958 -0.8100 34 1 0.4942 -2.2750 0.9792 35 1 1.5170 -2.4900 2.4637 36 1 3.1772 -2.3778 -2.2143 37 1 1.5115 -3.0050 -2.1907 38 1 3.9982 -4.5871 -2.9844 39 1 2.3326 -5.2143 -2.9609 40 1 1.6661 -3.5092 -4.6327 41 1 3.3315 -2.8816 -4.6567 42 1 2.4407 -3.1729 -8.2177 43 1 3.6270 -0.5175 -0.8619 44 1 5.6035 0.7908 -0.2675 45 1 4.3679 1.0130 0.9942 46 1 5.7498 -0.0709 1.2830 47 1 4.6677 -2.6615 -1.1671 48 1 5.9884 -1.4683 -1.1696 49 1 5.6802 -2.4519 0.2816 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451906929.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:32 Heat of formation + Delta-G solvation = -80.721371 kcal Electronic energy + Delta-G solvation = -26849.148915 eV Core-core repulsion = 23324.172805 eV Total energy + Delta-G solvation = -3524.976110 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.52088 -38.37659 -37.12340 -36.56539 -35.45132 -35.32189 -34.19926 -29.88150 -29.12348 -28.33830 -27.49696 -26.34053 -25.65656 -23.37180 -22.27632 -21.74401 -20.56795 -19.15766 -18.71194 -18.42327 -17.61732 -17.30690 -16.58166 -16.37733 -16.11336 -15.94897 -15.24711 -15.06009 -14.53577 -14.49806 -14.18057 -14.07542 -13.91002 -13.71301 -13.51509 -13.37917 -13.26490 -13.16541 -13.04255 -12.93960 -12.87259 -12.78095 -12.65237 -12.62874 -12.25048 -12.11913 -11.83855 -11.83319 -11.75648 -11.59895 -11.42818 -11.36312 -11.10122 -11.00277 -10.85101 -10.60327 -9.91144 -8.25108 -6.36583 -0.84318 1.38133 1.39040 1.50481 1.64460 2.37671 2.74471 3.00785 3.08315 3.40800 3.54328 3.69558 3.76899 3.86249 4.02062 4.14628 4.20290 4.30381 4.41865 4.51997 4.54423 4.58486 4.65059 4.70828 4.77442 4.78750 4.85468 4.86646 4.93617 4.95665 4.98864 5.07106 5.12176 5.13065 5.17535 5.27578 5.34756 5.40296 5.42086 5.48312 5.52263 5.56440 5.57360 5.63252 5.75451 5.79512 6.16108 6.78100 7.32850 8.86478 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015221 B = 0.003809 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.168779 B = 7348.807935 C = 7716.731041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.086 4.086 3 C -0.154 4.154 4 C -0.094 4.094 5 H 0.129 0.871 6 C 0.118 3.882 7 N -1.045 6.045 8 S 2.639 3.361 9 O -0.997 6.997 10 O -0.976 6.976 11 C -0.608 4.608 12 C -0.102 4.102 13 C 0.036 3.964 14 C -0.554 4.554 15 H 0.059 0.941 16 C 0.005 3.995 17 N -0.929 5.929 18 Si 0.963 3.037 19 H -0.271 1.271 20 H -0.278 1.278 21 H -0.265 1.265 22 C 0.164 3.836 23 H 0.108 0.892 24 C -0.123 4.123 25 C -0.139 4.139 26 C -0.168 4.168 27 H 0.073 0.927 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.048 0.952 34 H 0.081 0.919 35 H 0.101 0.899 36 H 0.142 0.858 37 H 0.138 0.862 38 H 0.066 0.934 39 H 0.061 0.939 40 H 0.001 0.999 41 H 0.003 0.997 42 H 0.266 0.734 43 H 0.084 0.916 44 H 0.058 0.942 45 H 0.084 0.916 46 H 0.061 0.939 47 H 0.035 0.965 48 H 0.060 0.940 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.861 12.738 21.371 24.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.104 4.104 3 C -0.211 4.211 4 C -0.115 4.115 5 H 0.146 0.854 6 C -0.006 4.006 7 N -0.886 5.886 8 S 2.738 3.262 9 O -0.988 6.988 10 O -0.966 6.966 11 C -0.739 4.739 12 C -0.141 4.141 13 C -0.003 4.003 14 C -0.592 4.592 15 H 0.077 0.923 16 C -0.193 4.193 17 N -0.568 5.568 18 Si 0.787 3.213 19 H -0.197 1.197 20 H -0.203 1.203 21 H -0.190 1.190 22 C 0.059 3.941 23 H 0.126 0.874 24 C -0.142 4.142 25 C -0.197 4.197 26 C -0.226 4.226 27 H 0.092 0.908 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.067 0.933 34 H 0.099 0.901 35 H 0.119 0.881 36 H 0.160 0.840 37 H 0.156 0.844 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.020 0.980 41 H 0.021 0.979 42 H 0.074 0.926 43 H 0.102 0.898 44 H 0.077 0.923 45 H 0.102 0.898 46 H 0.080 0.920 47 H 0.054 0.946 48 H 0.079 0.921 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.639 11.732 21.384 24.399 hybrid contribution 0.046 -0.531 -1.710 1.791 sum -0.593 11.201 19.675 22.647 Atomic orbital electron populations 1.21893 0.94723 1.01766 1.02471 1.20945 0.96002 0.96780 0.96683 1.22059 1.02035 0.94458 1.02530 1.23088 0.93691 0.94536 1.00160 0.85364 1.22902 0.90290 0.92067 0.95346 1.59991 1.28077 1.42117 1.58413 1.03835 0.73055 0.72876 0.76442 1.93484 1.60609 1.61712 1.82985 1.93568 1.35152 1.82606 1.85260 1.30638 1.12306 1.11105 1.19831 1.21289 1.01154 0.96053 0.95643 1.18915 0.95717 0.95500 0.90129 1.21705 1.44216 1.00955 0.92300 0.92307 1.25918 0.94854 0.97720 1.00824 1.70069 1.47089 1.23284 1.16398 0.85482 0.78893 0.78873 0.78051 1.19657 1.20329 1.18963 1.22598 0.93288 0.81330 0.96879 0.87405 1.21740 0.97077 0.96732 0.98639 1.21819 1.00022 0.96556 1.01298 1.22366 1.00351 0.98167 1.01689 0.90781 0.93138 0.93040 0.92421 0.90867 0.91303 0.93276 0.90055 0.88131 0.83983 0.84362 0.91543 0.92056 0.98036 0.97854 0.92562 0.89788 0.92335 0.89765 0.91983 0.94585 0.92055 0.91980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 8.90 71.98 0.64 -1.47 16 2 C -0.09 -1.23 2.05 -10.79 -0.02 -1.25 16 3 C -0.15 -1.77 8.67 71.98 0.62 -1.15 16 4 C -0.09 -1.13 3.54 -10.37 -0.04 -1.17 16 5 H 0.13 0.77 8.07 -2.39 -0.02 0.75 16 6 C 0.12 1.92 8.01 83.18 0.67 2.58 16 7 N -1.05 -24.07 3.77 -526.26 -1.98 -26.06 16 8 S 2.64 85.73 5.06 -56.49 -0.29 85.45 16 9 O -1.00 -38.40 18.02 -127.65 -2.30 -40.70 16 10 O -0.98 -35.88 14.36 -127.65 -1.83 -37.72 16 11 C -0.61 -20.48 5.54 71.98 0.40 -20.08 16 12 C -0.10 -4.41 5.16 30.59 0.16 -4.26 16 13 C 0.04 1.90 4.97 29.85 0.15 2.04 16 14 C -0.55 -32.17 9.11 25.60 0.23 -31.94 16 15 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 16 C 0.01 0.31 5.46 84.65 0.46 0.77 16 17 N -0.93 -56.19 13.29 21.45 0.28 -55.90 16 18 Si 0.96 44.70 29.54 68.60 2.03 46.73 16 19 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 20 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 21 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 22 C 0.16 2.77 3.30 41.88 0.14 2.91 16 23 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 24 C -0.12 -2.28 2.06 -10.79 -0.02 -2.30 16 25 C -0.14 -1.81 8.19 71.98 0.59 -1.22 16 26 C -0.17 -4.32 7.38 71.98 0.53 -3.79 16 27 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.05 0.78 6.27 -2.39 -0.01 0.77 16 30 H 0.06 1.09 6.30 -2.39 -0.02 1.07 16 31 H 0.07 0.58 8.08 -2.38 -0.02 0.56 16 32 H 0.07 0.77 4.36 -2.39 -0.01 0.76 16 33 H 0.05 0.64 8.13 -2.39 -0.02 0.62 16 34 H 0.08 1.33 6.11 -2.39 -0.01 1.31 16 35 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.14 4.37 6.35 -2.39 -0.02 4.36 16 37 H 0.14 4.26 8.14 -2.39 -0.02 4.24 16 38 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 39 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 40 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 41 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 42 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 43 H 0.08 1.62 4.91 -2.39 -0.01 1.61 16 44 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.08 0.75 6.25 -2.39 -0.01 0.74 16 46 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.04 1.08 2.85 -3.41 -0.01 1.07 16 48 H 0.06 1.49 8.08 -2.39 -0.02 1.47 16 49 H 0.06 1.66 7.63 -2.39 -0.02 1.64 16 Total: -1.00 -74.39 376.71 1.33 -73.06 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: 0.91 Total: 15.47 kcal Atomic # 6 Polarization: -64.84 SS G_CDS: 4.51 Total: -60.33 kcal Atomic # 7 Polarization: -80.26 SS G_CDS: -1.70 Total: -81.96 kcal Atomic # 8 Polarization: -74.28 SS G_CDS: -4.13 Total: -78.41 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Atomic # 16 Polarization: 85.73 SS G_CDS: -0.29 Total: 85.45 kcal Total: -74.39 1.33 -73.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451906929.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.663 kcal (2) G-P(sol) polarization free energy of solvation -74.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds