Wall clock time and date at job start Tue Mar 31 2020 12:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47413 * 2 1 4 4 C 1.52998 * 109.47026 * 120.00099 * 2 1 3 5 5 H 1.09003 * 113.28445 * 44.50173 * 4 2 1 6 6 C 1.53752 * 114.57587 * 271.24062 * 4 2 1 7 7 N 1.47063 * 87.89027 * 272.66282 * 6 4 2 8 8 S 1.65596 * 136.06188 * 152.95982 * 7 6 4 9 9 O 1.42105 * 104.28051 * 143.88090 * 8 7 6 10 10 O 1.42108 * 104.27608 * 16.02573 * 8 7 6 11 11 C 1.81397 * 104.45068 * 259.95516 * 8 7 6 12 12 C 1.53001 * 109.46926 * 183.26802 * 11 8 7 13 13 C 1.53002 * 109.46797 * 179.97438 * 12 11 8 14 14 C 1.50704 * 109.46774 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00193 * 0.02562 * 14 13 12 16 16 C 1.37881 * 119.99656 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00019 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99798 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47007 * 89.99848 * 18 16 14 20 20 H 1.48493 * 109.47043 * 209.99961 * 18 16 14 21 21 H 1.48496 * 109.47180 * 330.00037 * 18 16 14 22 22 C 1.47069 * 87.88235 * 332.70447 * 7 6 4 23 23 H 1.08999 * 113.47171 * 272.50317 * 22 7 6 24 24 C 1.53000 * 113.46932 * 142.12282 * 22 7 6 25 25 C 1.53004 * 109.47117 * 65.84936 * 24 22 7 26 26 C 1.52994 * 109.47511 * 185.85385 * 24 22 7 27 27 H 1.09000 * 109.47056 * 304.90119 * 1 2 3 28 28 H 1.09003 * 109.46907 * 64.89861 * 1 2 3 29 29 H 1.08994 * 109.47381 * 184.89272 * 1 2 3 30 30 H 1.09001 * 109.47506 * 239.99691 * 2 1 3 31 31 H 1.08997 * 109.47395 * 191.10578 * 3 2 1 32 32 H 1.08996 * 109.47143 * 311.10958 * 3 2 1 33 33 H 1.09005 * 109.46774 * 71.11036 * 3 2 1 34 34 H 1.08996 * 113.46641 * 157.92589 * 6 4 2 35 35 H 1.09002 * 113.55462 * 27.41008 * 6 4 2 36 36 H 1.08999 * 109.47039 * 63.26952 * 11 8 7 37 37 H 1.08995 * 109.47190 * 303.26160 * 11 8 7 38 38 H 1.09000 * 109.47328 * 59.99691 * 12 11 8 39 39 H 1.09006 * 109.47127 * 299.99610 * 12 11 8 40 40 H 1.08999 * 109.47051 * 60.00222 * 13 12 11 41 41 H 1.08995 * 109.47308 * 299.99351 * 13 12 11 42 42 H 0.97000 * 119.99536 * 180.02562 * 17 16 14 43 43 H 1.09003 * 109.46797 * 305.85372 * 24 22 7 44 44 H 1.08996 * 109.46912 * 46.53783 * 25 24 22 45 45 H 1.09000 * 109.46539 * 166.53358 * 25 24 22 46 46 H 1.08997 * 109.47455 * 286.53160 * 25 24 22 47 47 H 1.09007 * 109.47270 * 64.83009 * 26 24 22 48 48 H 1.09003 * 109.47279 * 184.83520 * 26 24 22 49 49 H 1.09007 * 109.46957 * 304.83680 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.5103 -1.6512 1.4563 6 6 2.2245 0.1829 2.4790 7 7 3.5805 0.4769 1.9916 8 16 4.6523 1.7314 2.1322 9 8 5.9238 1.1004 2.1985 10 8 4.1561 2.4957 3.2227 11 6 4.4784 2.6516 0.5787 12 6 5.4864 3.8024 0.5520 13 6 5.3401 4.5781 -0.7586 14 6 6.3326 5.7119 -0.7846 15 1 7.0010 5.8638 0.0500 16 6 6.3871 6.5554 -1.8739 17 7 5.5728 6.3708 -2.8900 18 14 7.6178 7.9605 -1.9065 19 1 8.8873 7.4925 -2.5185 20 1 7.0664 9.0829 -2.7072 21 1 7.8779 8.4229 -0.5195 22 6 3.5685 -0.8363 1.3297 23 1 3.9104 -1.6488 1.9708 24 6 4.2525 -0.8352 -0.0389 25 6 5.7470 -0.5593 0.1381 26 6 4.0610 -2.1986 -0.7060 27 1 -0.3633 0.5880 0.8428 28 1 -0.3633 0.4360 -0.9306 29 1 -0.3634 -1.0238 0.0876 30 1 1.8934 -0.5139 -0.8899 31 1 3.1119 1.4489 -0.1979 32 1 1.5242 2.0103 -0.7743 33 1 1.8475 1.8959 0.9724 34 1 2.2112 -0.3610 3.4235 35 1 1.5669 1.0521 2.4833 36 1 3.4674 3.0524 0.5050 37 1 4.6669 1.9841 -0.2620 38 1 6.4974 3.4016 0.6258 39 1 5.2979 4.4700 1.3928 40 1 4.3292 4.9788 -0.8328 41 1 5.5289 3.9103 -1.5991 42 1 5.6115 6.9641 -3.6564 43 1 3.8114 -0.0593 -0.6648 44 1 6.1384 -1.1815 0.9429 45 1 6.2715 -0.7917 -0.7887 46 1 5.8957 0.4916 0.3861 47 1 3.0021 -2.3578 -0.9101 48 1 4.6197 -2.2271 -1.6415 49 1 4.4247 -2.9825 -0.0415 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451906932.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:37 Heat of formation + Delta-G solvation = -44.091465 kcal Electronic energy + Delta-G solvation = -27173.372893 eV Core-core repulsion = 23649.985175 eV Total energy + Delta-G solvation = -3523.387718 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.00874 -37.00273 -35.73839 -34.94503 -34.71442 -34.06514 -32.25004 -29.09993 -27.86741 -27.03625 -26.75657 -25.91972 -23.65537 -22.73833 -20.75280 -20.63627 -19.13851 -18.30015 -17.58227 -16.73738 -16.35422 -16.21627 -15.53241 -15.12927 -14.58230 -14.46753 -14.23102 -14.03308 -13.58347 -13.49309 -13.06855 -12.92254 -12.59165 -12.56980 -12.33399 -12.22727 -12.05187 -12.02172 -11.93450 -11.84377 -11.68945 -11.40249 -11.30065 -11.15877 -11.03748 -10.91133 -10.78501 -10.70335 -10.54136 -10.44456 -10.28328 -10.03181 -9.93243 -9.44895 -9.18070 -8.87129 -8.40558 -6.05612 -4.08474 0.41811 2.75131 3.30390 3.36538 3.40728 3.98296 4.08221 4.24831 4.35873 4.42609 4.56712 4.76936 4.82402 4.92009 5.01694 5.02194 5.14466 5.25445 5.30500 5.31311 5.35262 5.37886 5.46110 5.52996 5.59521 5.66198 5.76795 5.79793 5.82658 5.85605 5.87799 5.89107 5.94306 6.04732 6.12141 6.18084 6.20091 6.27292 6.34646 6.41397 6.52436 6.53714 6.87425 7.57188 7.67308 7.92447 8.33112 8.97587 9.56194 11.05544 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016190 B = 0.003886 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.030679 B = 7202.818650 C = 7495.791336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.075 4.075 3 C -0.183 4.183 4 C -0.116 4.116 5 H 0.092 0.908 6 C 0.131 3.869 7 N -1.040 6.040 8 S 2.615 3.385 9 O -0.952 6.952 10 O -0.963 6.963 11 C -0.617 4.617 12 C -0.106 4.106 13 C 0.033 3.967 14 C -0.526 4.526 15 H 0.057 0.943 16 C 0.059 3.941 17 N -0.895 5.895 18 Si 0.893 3.107 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.273 1.273 22 C 0.170 3.830 23 H 0.092 0.908 24 C -0.127 4.127 25 C -0.166 4.166 26 C -0.139 4.139 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.136 0.864 37 H 0.132 0.868 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.021 0.979 41 H 0.021 0.979 42 H 0.261 0.739 43 H 0.089 0.911 44 H 0.063 0.937 45 H 0.058 0.942 46 H 0.067 0.933 47 H 0.057 0.943 48 H 0.059 0.941 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.432 -19.064 5.833 22.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.093 4.093 3 C -0.239 4.239 4 C -0.137 4.137 5 H 0.110 0.890 6 C 0.006 3.994 7 N -0.877 5.877 8 S 2.715 3.285 9 O -0.942 6.942 10 O -0.953 6.953 11 C -0.749 4.749 12 C -0.145 4.145 13 C -0.005 4.005 14 C -0.564 4.564 15 H 0.076 0.924 16 C -0.143 4.143 17 N -0.534 5.534 18 Si 0.721 3.279 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.198 1.198 22 C 0.064 3.936 23 H 0.109 0.891 24 C -0.146 4.146 25 C -0.224 4.224 26 C -0.197 4.197 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.099 0.901 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.154 0.846 37 H 0.150 0.850 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.039 0.961 41 H 0.039 0.961 42 H 0.071 0.929 43 H 0.107 0.893 44 H 0.082 0.918 45 H 0.077 0.923 46 H 0.086 0.914 47 H 0.076 0.924 48 H 0.078 0.922 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.761 -18.645 6.491 22.024 hybrid contribution 0.427 0.949 -0.668 1.236 sum -9.335 -17.697 5.824 20.838 Atomic orbital electron populations 1.21833 0.94990 1.01517 1.01990 1.20853 0.95447 0.96349 0.96696 1.22832 1.03025 0.95867 1.02194 1.23121 0.95610 0.99204 0.95741 0.89006 1.22497 0.81688 0.98638 0.96591 1.60244 1.30882 1.29716 1.66901 1.04884 0.73084 0.73345 0.77191 1.93568 1.40004 1.73978 1.86657 1.93543 1.80472 1.71179 1.50151 1.31108 1.10671 1.12358 1.20722 1.21534 0.95356 0.93756 1.03853 1.19039 0.97571 0.94235 0.89678 1.21253 1.19162 1.12626 1.03379 0.92426 1.25004 0.95913 0.97800 0.95554 1.69956 1.37637 1.38581 1.07216 0.86572 0.81343 0.81840 0.78167 1.20571 1.21168 1.19751 1.22206 0.94369 0.84323 0.92714 0.89054 1.21760 0.97076 0.99761 0.96006 1.22277 0.94192 1.03790 1.02109 1.21724 1.01716 0.95731 1.00486 0.92621 0.92541 0.92787 0.90085 0.90625 0.92073 0.92315 0.90172 0.90106 0.84582 0.84968 0.91607 0.91801 0.96111 0.96111 0.92922 0.89323 0.91811 0.92331 0.91402 0.92392 0.92195 0.92539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.17 37.16 0.34 -0.70 16 2 C -0.08 -0.61 2.34 -90.62 -0.21 -0.82 16 3 C -0.18 -1.93 5.75 37.16 0.21 -1.71 16 4 C -0.12 -0.88 3.80 -89.97 -0.34 -1.22 16 5 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 6 C 0.13 1.22 7.58 -8.38 -0.06 1.16 16 7 N -1.04 -12.49 2.36 -117.72 -0.28 -12.77 16 8 S 2.62 42.03 5.10 -107.50 -0.55 41.48 16 9 O -0.95 -17.23 14.72 -57.54 -0.85 -18.08 16 10 O -0.96 -18.34 18.02 -57.54 -1.04 -19.37 16 11 C -0.62 -10.00 3.64 37.16 0.14 -9.87 16 12 C -0.11 -2.18 5.16 -26.73 -0.14 -2.31 16 13 C 0.03 0.84 4.97 -27.88 -0.14 0.70 16 14 C -0.53 -14.85 9.11 -34.44 -0.31 -15.16 16 15 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 17 N -0.89 -26.51 13.29 55.43 0.74 -25.77 16 18 Si 0.89 21.65 29.54 -169.99 -5.02 16.62 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 22 C 0.17 1.62 3.22 -72.40 -0.23 1.39 16 23 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 24 C -0.13 -1.26 1.89 -90.62 -0.17 -1.43 16 25 C -0.17 -2.08 7.80 37.16 0.29 -1.79 16 26 C -0.14 -1.07 8.94 37.15 0.33 -0.74 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.08 0.64 6.08 -51.93 -0.32 0.32 16 31 H 0.08 0.87 1.65 -51.93 -0.09 0.78 16 32 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 33 H 0.06 0.62 5.25 -51.93 -0.27 0.35 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 0.74 6.57 -51.93 -0.34 0.40 16 36 H 0.14 2.03 5.81 -51.92 -0.30 1.73 16 37 H 0.13 1.94 5.43 -51.93 -0.28 1.65 16 38 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 43 H 0.09 0.90 4.14 -51.93 -0.21 0.69 16 44 H 0.06 0.81 8.06 -51.93 -0.42 0.39 16 45 H 0.06 0.68 8.03 -51.93 -0.42 0.26 16 46 H 0.07 0.99 3.42 -51.93 -0.18 0.81 16 47 H 0.06 0.38 7.28 -51.93 -0.38 0.00 16 48 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 49 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 366.68 15.07 5.53 5.53 Total: -1.00 -33.67 366.68 -10.10 -43.78 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -8.24 Total: -0.47 kcal Atomic # 6 Polarization: -30.55 SS G_CDS: -0.40 Total: -30.95 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: 0.46 Total: -38.54 kcal Atomic # 8 Polarization: -35.57 SS G_CDS: -1.88 Total: -37.45 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: 42.03 SS G_CDS: -0.55 Total: 41.48 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.67 -10.10 -43.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451906932.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.314 kcal (2) G-P(sol) polarization free energy of solvation -33.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds