Wall clock time and date at job start Tue Mar 31 2020 12:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47413 * 2 1 4 4 C 1.52998 * 109.47026 * 120.00099 * 2 1 3 5 5 H 1.09003 * 113.28445 * 44.50173 * 4 2 1 6 6 C 1.53752 * 114.57587 * 271.24062 * 4 2 1 7 7 N 1.47063 * 87.89027 * 272.66282 * 6 4 2 8 8 S 1.65596 * 136.06188 * 152.95982 * 7 6 4 9 9 O 1.42105 * 104.28051 * 143.88090 * 8 7 6 10 10 O 1.42108 * 104.27608 * 16.02573 * 8 7 6 11 11 C 1.81397 * 104.45068 * 259.95516 * 8 7 6 12 12 C 1.53001 * 109.46926 * 183.26802 * 11 8 7 13 13 C 1.53002 * 109.46797 * 179.97438 * 12 11 8 14 14 C 1.50704 * 109.46774 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00193 * 0.02562 * 14 13 12 16 16 C 1.37881 * 119.99656 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00019 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99798 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47007 * 89.99848 * 18 16 14 20 20 H 1.48493 * 109.47043 * 209.99961 * 18 16 14 21 21 H 1.48496 * 109.47180 * 330.00037 * 18 16 14 22 22 C 1.47069 * 87.88235 * 332.70447 * 7 6 4 23 23 H 1.08999 * 113.47171 * 272.50317 * 22 7 6 24 24 C 1.53000 * 113.46932 * 142.12282 * 22 7 6 25 25 C 1.53004 * 109.47117 * 65.84936 * 24 22 7 26 26 C 1.52994 * 109.47511 * 185.85385 * 24 22 7 27 27 H 1.09000 * 109.47056 * 304.90119 * 1 2 3 28 28 H 1.09003 * 109.46907 * 64.89861 * 1 2 3 29 29 H 1.08994 * 109.47381 * 184.89272 * 1 2 3 30 30 H 1.09001 * 109.47506 * 239.99691 * 2 1 3 31 31 H 1.08997 * 109.47395 * 191.10578 * 3 2 1 32 32 H 1.08996 * 109.47143 * 311.10958 * 3 2 1 33 33 H 1.09005 * 109.46774 * 71.11036 * 3 2 1 34 34 H 1.08996 * 113.46641 * 157.92589 * 6 4 2 35 35 H 1.09002 * 113.55462 * 27.41008 * 6 4 2 36 36 H 1.08999 * 109.47039 * 63.26952 * 11 8 7 37 37 H 1.08995 * 109.47190 * 303.26160 * 11 8 7 38 38 H 1.09000 * 109.47328 * 59.99691 * 12 11 8 39 39 H 1.09006 * 109.47127 * 299.99610 * 12 11 8 40 40 H 1.08999 * 109.47051 * 60.00222 * 13 12 11 41 41 H 1.08995 * 109.47308 * 299.99351 * 13 12 11 42 42 H 0.97000 * 119.99536 * 180.02562 * 17 16 14 43 43 H 1.09003 * 109.46797 * 305.85372 * 24 22 7 44 44 H 1.08996 * 109.46912 * 46.53783 * 25 24 22 45 45 H 1.09000 * 109.46539 * 166.53358 * 25 24 22 46 46 H 1.08997 * 109.47455 * 286.53160 * 25 24 22 47 47 H 1.09007 * 109.47270 * 64.83009 * 26 24 22 48 48 H 1.09003 * 109.47279 * 184.83520 * 26 24 22 49 49 H 1.09007 * 109.46957 * 304.83680 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.5103 -1.6512 1.4563 6 6 2.2245 0.1829 2.4790 7 7 3.5805 0.4769 1.9916 8 16 4.6523 1.7314 2.1322 9 8 5.9238 1.1004 2.1985 10 8 4.1561 2.4957 3.2227 11 6 4.4784 2.6516 0.5787 12 6 5.4864 3.8024 0.5520 13 6 5.3401 4.5781 -0.7586 14 6 6.3326 5.7119 -0.7846 15 1 7.0010 5.8638 0.0500 16 6 6.3871 6.5554 -1.8739 17 7 5.5728 6.3708 -2.8900 18 14 7.6178 7.9605 -1.9065 19 1 8.8873 7.4925 -2.5185 20 1 7.0664 9.0829 -2.7072 21 1 7.8779 8.4229 -0.5195 22 6 3.5685 -0.8363 1.3297 23 1 3.9104 -1.6488 1.9708 24 6 4.2525 -0.8352 -0.0389 25 6 5.7470 -0.5593 0.1381 26 6 4.0610 -2.1986 -0.7060 27 1 -0.3633 0.5880 0.8428 28 1 -0.3633 0.4360 -0.9306 29 1 -0.3634 -1.0238 0.0876 30 1 1.8934 -0.5139 -0.8899 31 1 3.1119 1.4489 -0.1979 32 1 1.5242 2.0103 -0.7743 33 1 1.8475 1.8959 0.9724 34 1 2.2112 -0.3610 3.4235 35 1 1.5669 1.0521 2.4833 36 1 3.4674 3.0524 0.5050 37 1 4.6669 1.9841 -0.2620 38 1 6.4974 3.4016 0.6258 39 1 5.2979 4.4700 1.3928 40 1 4.3292 4.9788 -0.8328 41 1 5.5289 3.9103 -1.5991 42 1 5.6115 6.9641 -3.6564 43 1 3.8114 -0.0593 -0.6648 44 1 6.1384 -1.1815 0.9429 45 1 6.2715 -0.7917 -0.7887 46 1 5.8957 0.4916 0.3861 47 1 3.0021 -2.3578 -0.9101 48 1 4.6197 -2.2271 -1.6415 49 1 4.4247 -2.9825 -0.0415 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451906932.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:35 Heat of formation + Delta-G solvation = -65.172217 kcal Electronic energy + Delta-G solvation = -27174.287023 eV Core-core repulsion = 23649.985175 eV Total energy + Delta-G solvation = -3524.301848 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.77451 -38.35508 -37.12508 -36.64915 -35.49096 -35.00458 -34.18325 -30.39160 -29.15647 -27.94523 -27.59655 -26.67337 -25.53194 -23.49201 -22.47591 -21.44459 -20.21014 -19.25512 -18.76814 -18.41168 -17.55465 -17.52094 -16.65842 -16.49967 -16.08766 -15.82225 -15.27503 -14.98394 -14.64115 -14.36505 -14.27436 -14.10084 -13.79306 -13.73041 -13.62263 -13.32228 -13.28127 -13.14668 -13.03780 -12.91105 -12.81745 -12.78453 -12.66324 -12.59235 -12.25977 -12.10677 -11.86950 -11.82115 -11.66986 -11.60840 -11.42237 -11.31730 -11.23082 -11.01900 -10.74763 -10.59640 -9.82845 -8.24592 -6.35798 -0.85421 1.38251 1.39023 1.50442 1.64063 2.37905 2.72875 2.99403 3.08862 3.42944 3.54510 3.70075 3.75128 3.84901 4.05147 4.12681 4.22315 4.28702 4.36519 4.45780 4.56490 4.58874 4.60333 4.72571 4.81309 4.82114 4.85841 4.90162 4.92404 4.94707 4.99057 5.04957 5.11429 5.17714 5.18704 5.28711 5.30608 5.40808 5.42383 5.44934 5.53419 5.57441 5.58865 5.62089 5.75260 5.76443 6.17021 6.78876 7.33472 8.86877 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016190 B = 0.003886 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.030679 B = 7202.818650 C = 7495.791336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.074 4.074 3 C -0.190 4.190 4 C -0.094 4.094 5 H 0.130 0.870 6 C 0.121 3.879 7 N -1.044 6.044 8 S 2.636 3.364 9 O -0.976 6.976 10 O -0.996 6.996 11 C -0.614 4.614 12 C -0.104 4.104 13 C 0.037 3.963 14 C -0.554 4.554 15 H 0.058 0.942 16 C 0.006 3.994 17 N -0.928 5.928 18 Si 0.962 3.038 19 H -0.271 1.271 20 H -0.279 1.279 21 H -0.266 1.266 22 C 0.165 3.835 23 H 0.108 0.892 24 C -0.127 4.127 25 C -0.171 4.171 26 C -0.134 4.134 27 H 0.053 0.947 28 H 0.049 0.951 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.062 0.938 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.101 0.899 35 H 0.080 0.920 36 H 0.146 0.854 37 H 0.145 0.855 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.002 0.998 41 H 0.003 0.997 42 H 0.265 0.735 43 H 0.084 0.916 44 H 0.059 0.941 45 H 0.060 0.940 46 H 0.042 0.958 47 H 0.076 0.924 48 H 0.055 0.945 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.484 -20.913 6.165 24.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.092 4.092 3 C -0.247 4.247 4 C -0.114 4.114 5 H 0.148 0.852 6 C -0.003 4.003 7 N -0.884 5.884 8 S 2.735 3.265 9 O -0.966 6.966 10 O -0.987 6.987 11 C -0.744 4.744 12 C -0.143 4.143 13 C -0.001 4.001 14 C -0.592 4.592 15 H 0.076 0.924 16 C -0.193 4.193 17 N -0.568 5.568 18 Si 0.786 3.214 19 H -0.197 1.197 20 H -0.204 1.204 21 H -0.190 1.190 22 C 0.060 3.940 23 H 0.126 0.874 24 C -0.146 4.146 25 C -0.229 4.229 26 C -0.192 4.192 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.092 0.908 30 H 0.107 0.893 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.119 0.881 35 H 0.098 0.902 36 H 0.164 0.836 37 H 0.163 0.837 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.021 0.979 41 H 0.022 0.978 42 H 0.074 0.926 43 H 0.102 0.898 44 H 0.078 0.922 45 H 0.079 0.921 46 H 0.061 0.939 47 H 0.095 0.905 48 H 0.074 0.926 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.807 -20.487 6.823 24.147 hybrid contribution 0.709 1.463 -0.793 1.808 sum -10.098 -19.025 6.031 22.367 Atomic orbital electron populations 1.21808 0.93864 1.02713 1.01670 1.20866 0.96311 0.94554 0.97439 1.22870 1.02197 0.97945 1.01683 1.23066 0.94066 1.00001 0.94315 0.85203 1.22873 0.79771 0.99267 0.98379 1.59977 1.31523 1.29503 1.67429 1.03893 0.72953 0.73509 0.76123 1.93538 1.41981 1.74339 1.86784 1.93491 1.81088 1.72709 1.51393 1.31077 1.09719 1.11233 1.22321 1.21332 0.96856 0.94937 1.01185 1.18899 0.95878 0.93843 0.91500 1.21710 1.19920 1.13827 1.03711 0.92364 1.25905 0.97813 1.00490 0.95070 1.70068 1.39128 1.39742 1.07830 0.85494 0.78909 0.78457 0.78516 1.19653 1.20379 1.19016 1.22547 0.95948 0.83101 0.92408 0.87440 1.21782 0.95015 1.01177 0.96639 1.22301 0.96527 1.02016 1.02028 1.21701 1.03012 0.94260 1.00224 0.92772 0.93154 0.90785 0.89337 0.91941 0.92883 0.92683 0.88147 0.90191 0.83622 0.83734 0.91708 0.92046 0.97944 0.97830 0.92587 0.89812 0.92229 0.92066 0.93911 0.90467 0.92565 0.91586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.17 71.98 0.66 -0.95 16 2 C -0.07 -1.00 2.34 -10.79 -0.03 -1.03 16 3 C -0.19 -3.89 5.75 71.98 0.41 -3.48 16 4 C -0.09 -1.08 3.80 -10.37 -0.04 -1.11 16 5 H 0.13 0.68 8.14 -2.39 -0.02 0.66 16 6 C 0.12 1.93 7.58 83.26 0.63 2.56 16 7 N -1.04 -23.71 2.36 -526.36 -1.24 -24.95 16 8 S 2.64 85.67 5.10 -56.49 -0.29 85.38 16 9 O -0.98 -35.98 14.72 -127.65 -1.88 -37.86 16 10 O -1.00 -38.45 18.02 -127.65 -2.30 -40.75 16 11 C -0.61 -20.56 3.64 71.98 0.26 -20.30 16 12 C -0.10 -4.47 5.16 30.60 0.16 -4.31 16 13 C 0.04 1.96 4.97 29.85 0.15 2.11 16 14 C -0.55 -32.08 9.11 25.60 0.23 -31.85 16 15 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 16 C 0.01 0.33 5.46 84.66 0.46 0.79 16 17 N -0.93 -55.98 13.29 21.45 0.28 -55.70 16 18 Si 0.96 44.68 29.54 68.60 2.03 46.70 16 19 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 20 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 21 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 22 C 0.16 2.71 3.22 41.78 0.13 2.85 16 23 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 24 C -0.13 -2.31 1.89 -10.79 -0.02 -2.33 16 25 C -0.17 -4.25 7.80 71.98 0.56 -3.68 16 26 C -0.13 -1.69 8.94 71.98 0.64 -1.04 16 27 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.09 1.12 6.08 -2.39 -0.01 1.11 16 31 H 0.06 1.43 1.65 -2.39 0.00 1.42 16 32 H 0.05 1.14 8.10 -2.39 -0.02 1.12 16 33 H 0.05 1.14 5.25 -2.38 -0.01 1.13 16 34 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.08 1.31 6.57 -2.39 -0.02 1.29 16 36 H 0.15 4.53 5.81 -2.39 -0.01 4.51 16 37 H 0.14 4.42 5.43 -2.39 -0.01 4.41 16 38 H 0.06 2.74 8.14 -2.39 -0.02 2.72 16 39 H 0.06 2.62 8.14 -2.38 -0.02 2.60 16 40 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 41 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 42 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 43 H 0.08 1.62 4.14 -2.39 -0.01 1.61 16 44 H 0.06 1.48 8.06 -2.39 -0.02 1.46 16 45 H 0.06 1.42 8.03 -2.39 -0.02 1.40 16 46 H 0.04 1.28 3.42 -2.39 -0.01 1.27 16 47 H 0.08 0.69 7.28 -2.38 -0.02 0.67 16 48 H 0.06 0.76 8.09 -2.39 -0.02 0.74 16 49 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 Total: -1.00 -74.20 366.68 1.76 -72.44 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: 0.93 Total: 16.50 kcal Atomic # 6 Polarization: -66.00 SS G_CDS: 4.22 Total: -61.77 kcal Atomic # 7 Polarization: -79.69 SS G_CDS: -0.95 Total: -80.65 kcal Atomic # 8 Polarization: -74.43 SS G_CDS: -4.18 Total: -78.61 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.70 kcal Atomic # 16 Polarization: 85.67 SS G_CDS: -0.29 Total: 85.38 kcal Total: -74.20 1.76 -72.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451906932.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.272 kcal (2) G-P(sol) polarization free energy of solvation -74.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds