Wall clock time and date at job start Tue Mar 31 2020 12:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.52992 * 109.47482 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47563 * 305.00337 * 4 3 2 6 6 C 1.53001 * 109.47279 * 65.00040 * 4 3 2 7 7 C 1.52997 * 109.47577 * 180.02562 * 6 4 3 8 8 C 1.52997 * 109.47181 * 299.99792 * 7 6 4 9 9 C 1.53005 * 109.46871 * 60.00177 * 8 7 6 10 10 C 1.52997 * 109.47448 * 184.99813 * 4 3 2 11 11 H 1.09007 * 109.46964 * 60.00529 * 10 4 3 12 12 C 1.52997 * 109.47331 * 300.00307 * 10 4 3 13 13 N 1.46508 * 109.47190 * 174.99926 * 12 10 4 14 14 S 1.65597 * 119.99829 * 164.99678 * 13 12 10 15 15 O 1.42107 * 104.27475 * 181.06873 * 14 13 12 16 16 O 1.42096 * 104.28301 * 308.92895 * 14 13 12 17 17 C 1.81400 * 104.44840 * 65.00226 * 14 13 12 18 18 C 1.52998 * 109.47316 * 179.97438 * 17 14 13 19 19 C 1.50703 * 109.47306 * 179.97438 * 18 17 14 20 20 H 1.08002 * 119.99848 * 359.97438 * 19 18 17 21 21 C 1.37876 * 119.99773 * 180.02562 * 19 18 17 22 22 N 1.31514 * 119.99616 * 179.97438 * 21 19 18 23 23 Si 1.86804 * 120.00213 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.47021 * 90.00306 * 23 21 19 25 25 H 1.48500 * 109.47074 * 210.00341 * 23 21 19 26 26 H 1.48497 * 109.47058 * 330.00395 * 23 21 19 27 27 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 28 28 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 30 30 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 31 31 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 32 32 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 33 33 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 34 34 H 1.09001 * 109.46924 * 300.00271 * 6 4 3 35 35 H 1.09000 * 109.47104 * 59.99686 * 6 4 3 36 36 H 1.09003 * 109.47165 * 179.97438 * 7 6 4 37 37 H 1.09000 * 109.46818 * 59.99916 * 7 6 4 38 38 H 1.09001 * 109.47615 * 300.00277 * 8 7 6 39 39 H 1.09000 * 109.47599 * 179.97438 * 8 7 6 40 40 H 1.09001 * 109.47099 * 179.97438 * 9 8 7 41 41 H 1.09000 * 109.47443 * 59.99683 * 9 8 7 42 42 H 1.09001 * 109.46966 * 294.99268 * 12 10 4 43 43 H 1.08997 * 109.46984 * 54.99561 * 12 10 4 44 44 H 0.96999 * 119.99747 * 344.99589 * 13 12 10 45 45 H 1.09006 * 109.47242 * 299.99980 * 17 14 13 46 46 H 1.08999 * 109.47428 * 59.99703 * 17 14 13 47 47 H 1.08998 * 109.47048 * 299.99887 * 18 17 14 48 48 H 1.08999 * 109.47025 * 59.99566 * 18 17 14 49 49 H 0.97008 * 119.99728 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9337 0.8530 0.8409 6 6 4.0794 0.8332 -1.3083 7 6 5.6094 0.8327 -1.3087 8 6 6.1199 2.2695 -1.1828 9 6 5.6105 2.8789 0.1249 10 6 4.0799 2.8796 0.1250 11 1 3.7170 3.3137 1.0567 12 6 3.5694 3.7071 -1.0562 13 7 3.9570 5.1083 -0.8747 14 16 3.8733 6.1623 -2.1492 15 8 4.3407 7.3940 -1.6165 16 8 4.5740 5.5037 -3.1953 17 6 2.1039 6.2662 -2.5351 18 6 1.8936 7.2227 -3.7106 19 6 0.4237 7.3086 -4.0317 20 1 -0.2892 6.7376 -3.4552 21 6 -0.0109 8.1152 -5.0620 22 7 -1.2936 8.1897 -5.3424 23 14 1.2222 9.1021 -6.0594 24 1 1.6821 8.2941 -7.2173 25 1 0.5789 10.3477 -6.5493 26 1 2.3858 9.4491 -5.2046 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 3.7161 -0.1906 -1.3979 35 1 3.7157 1.4227 -2.1499 36 1 5.9723 0.3981 -2.2402 37 1 5.9727 0.2429 -0.4672 38 1 5.7565 2.8594 -2.0243 39 1 7.2099 2.2692 -1.1826 40 1 5.9746 3.9023 0.2149 41 1 5.9738 2.2891 0.9665 42 1 4.0037 3.3269 -1.9808 43 1 2.4831 3.6344 -1.1082 44 1 4.2627 5.4185 -0.0079 45 1 1.7311 5.2768 -2.8002 46 1 1.5632 6.6369 -1.6643 47 1 2.2663 8.2120 -3.4452 48 1 2.4344 6.8524 -4.5815 49 1 -1.5994 8.7575 -6.0671 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452039636.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:14 Heat of formation + Delta-G solvation = -122.572298 kcal Electronic energy + Delta-G solvation = -25967.504894 eV Core-core repulsion = 22440.713991 eV Total energy + Delta-G solvation = -3526.790902 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.99144 -36.68343 -35.58431 -35.36124 -34.55285 -33.94468 -31.48005 -31.24986 -30.64558 -26.60740 -25.96568 -25.27170 -22.87370 -22.07810 -21.27562 -20.71436 -19.06059 -18.90196 -17.59472 -16.80678 -16.17285 -15.90100 -15.50787 -15.42462 -14.88538 -14.73086 -14.32254 -14.26164 -13.87046 -13.56193 -13.49180 -13.10691 -12.99897 -12.78873 -12.54623 -12.40053 -11.95891 -11.90196 -11.71561 -11.67229 -11.59937 -11.48266 -11.31868 -11.25417 -11.19992 -11.18030 -11.05931 -10.75044 -10.45418 -10.29145 -10.17540 -10.10479 -10.02417 -9.74049 -9.45845 -9.08876 -8.66169 -6.16549 -4.17702 0.69823 3.06782 3.26710 3.34066 3.38484 4.14003 4.34908 4.36039 4.41419 4.47476 4.63679 4.80199 4.90146 4.93128 5.00518 5.08023 5.11514 5.15319 5.24861 5.29258 5.34256 5.37509 5.49024 5.50250 5.52145 5.55216 5.59264 5.66625 5.68430 5.77181 5.84372 5.86065 5.91420 5.94039 6.00036 6.10493 6.12114 6.17843 6.22307 6.25313 6.28942 6.38104 6.82084 6.93279 7.08768 7.55008 8.36666 8.84519 9.43283 10.95837 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013521 B = 0.003752 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.369773 B = 7460.340905 C = 8779.883317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.124 4.124 3 C -0.123 4.123 4 C -0.078 4.078 5 H 0.073 0.927 6 C -0.123 4.123 7 C -0.118 4.118 8 C -0.129 4.129 9 C -0.113 4.113 10 C -0.087 4.087 11 H 0.077 0.923 12 C 0.111 3.889 13 N -1.124 6.124 14 S 2.590 3.410 15 O -0.969 6.969 16 O -0.966 6.966 17 C -0.584 4.584 18 C -0.007 4.007 19 C -0.519 4.519 20 H 0.078 0.922 21 C 0.072 3.928 22 N -0.896 5.896 23 Si 0.869 3.131 24 H -0.271 1.271 25 H -0.282 1.282 26 H -0.262 1.262 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.074 0.926 39 H 0.059 0.941 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.085 0.915 43 H 0.067 0.933 44 H 0.412 0.588 45 H 0.123 0.877 46 H 0.126 0.874 47 H 0.032 0.968 48 H 0.028 0.972 49 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.512 -17.134 13.423 24.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.162 4.162 3 C -0.161 4.161 4 C -0.097 4.097 5 H 0.091 0.909 6 C -0.160 4.160 7 C -0.155 4.155 8 C -0.167 4.167 9 C -0.151 4.151 10 C -0.106 4.106 11 H 0.095 0.905 12 C -0.015 4.015 13 N -0.882 5.882 14 S 2.687 3.313 15 O -0.959 6.959 16 O -0.956 6.956 17 C -0.717 4.717 18 C -0.046 4.046 19 C -0.558 4.558 20 H 0.096 0.904 21 C -0.131 4.131 22 N -0.534 5.534 23 Si 0.695 3.305 24 H -0.197 1.197 25 H -0.207 1.207 26 H -0.186 1.186 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.093 0.907 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.103 0.897 43 H 0.085 0.915 44 H 0.245 0.755 45 H 0.142 0.858 46 H 0.145 0.855 47 H 0.050 0.950 48 H 0.046 0.954 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 11.092 -16.702 12.724 23.746 hybrid contribution -0.112 0.473 -0.023 0.487 sum 10.980 -16.229 12.701 23.351 Atomic orbital electron populations 1.21794 0.95956 1.01426 1.02077 1.21565 0.95774 0.96968 1.01855 1.21795 0.94677 0.96960 1.02650 1.21147 0.95044 0.95084 0.98447 0.90883 1.21734 0.95527 1.01049 0.97691 1.21519 0.95684 0.96839 1.01481 1.21645 1.00175 0.96282 0.98572 1.21544 0.94592 1.01094 0.97848 1.21346 0.95955 0.95168 0.98166 0.90476 1.21604 0.99546 0.80235 1.00155 1.55695 1.83630 1.20427 1.28438 1.05546 0.79058 0.73154 0.73526 1.93558 1.80196 1.43941 1.78241 1.93540 1.70750 1.74866 1.56473 1.30298 1.21357 1.09977 1.10047 1.19407 1.00864 0.93413 0.90964 1.20850 0.89543 1.28159 1.17250 0.90428 1.24982 0.95198 0.96152 0.96745 1.69884 1.13712 1.39313 1.30465 0.86931 0.82110 0.80286 0.81172 1.19658 1.20749 1.18615 0.92452 0.93023 0.92843 0.92385 0.91781 0.91225 0.91771 0.91695 0.91326 0.92113 0.92346 0.90721 0.92228 0.91699 0.92054 0.89684 0.91497 0.75464 0.85818 0.85533 0.94963 0.95388 0.92390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 9.91 37.16 0.37 -0.82 16 2 C -0.12 -0.91 5.69 -26.73 -0.15 -1.06 16 3 C -0.12 -0.96 4.19 -26.74 -0.11 -1.07 16 4 C -0.08 -0.60 1.96 -90.62 -0.18 -0.77 16 5 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 6 C -0.12 -0.99 4.68 -26.73 -0.13 -1.12 16 7 C -0.12 -0.97 5.92 -26.73 -0.16 -1.12 16 8 C -0.13 -1.23 5.65 -26.73 -0.15 -1.38 16 9 C -0.11 -0.99 5.34 -26.70 -0.14 -1.13 16 10 C -0.09 -0.73 2.22 -90.59 -0.20 -0.93 16 11 H 0.08 0.59 8.14 -51.92 -0.42 0.17 16 12 C 0.11 1.18 4.60 -4.04 -0.02 1.16 16 13 N -1.12 -13.53 5.42 -10.61 -0.06 -13.59 16 14 S 2.59 43.53 5.46 -107.50 -0.59 42.94 16 15 O -0.97 -19.06 18.08 -57.54 -1.04 -20.10 16 16 O -0.97 -18.68 17.50 -57.54 -1.01 -19.69 16 17 C -0.58 -10.63 6.01 37.16 0.22 -10.40 16 18 C -0.01 -0.17 4.05 -27.88 -0.11 -0.28 16 19 C -0.52 -14.48 9.66 -34.44 -0.33 -14.82 16 20 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 21 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 22 N -0.90 -27.05 13.96 55.43 0.77 -26.28 16 23 Si 0.87 21.52 27.47 -169.99 -4.67 16.85 16 24 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 25 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.26 -6.29 6.54 56.52 0.37 -5.92 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.47 6.56 -51.93 -0.34 0.12 16 32 H 0.07 0.60 6.59 -51.93 -0.34 0.25 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.48 6.56 -51.93 -0.34 0.14 16 35 H 0.07 0.63 6.54 -51.93 -0.34 0.29 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.86 6.32 -51.93 -0.33 0.54 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.60 7.54 -51.93 -0.39 0.21 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.09 0.99 4.38 -51.93 -0.23 0.76 16 43 H 0.07 0.65 6.29 -51.93 -0.33 0.33 16 44 H 0.41 4.14 8.34 -34.47 -0.29 3.85 16 45 H 0.12 2.03 8.14 -51.92 -0.42 1.60 16 46 H 0.13 2.11 8.14 -51.92 -0.42 1.68 16 47 H 0.03 0.77 7.20 -51.93 -0.37 0.39 16 48 H 0.03 0.65 7.57 -51.93 -0.39 0.26 16 49 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 380.04 15.07 5.73 5.73 Total: -1.00 -33.64 380.04 -10.82 -44.46 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -8.77 Total: 1.46 kcal Atomic # 6 Polarization: -30.60 SS G_CDS: -1.19 Total: -31.79 kcal Atomic # 7 Polarization: -40.58 SS G_CDS: 0.72 Total: -39.87 kcal Atomic # 8 Polarization: -37.75 SS G_CDS: -2.05 Total: -39.79 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.85 kcal Atomic # 16 Polarization: 43.53 SS G_CDS: -0.59 Total: 42.94 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.64 -10.82 -44.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452039636.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.110 kcal (2) G-P(sol) polarization free energy of solvation -33.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds