Wall clock time and date at job start Tue Mar 31 2020 12:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.52992 * 109.47482 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47563 * 305.00337 * 4 3 2 6 6 C 1.53001 * 109.47279 * 65.00040 * 4 3 2 7 7 C 1.52997 * 109.47577 * 180.02562 * 6 4 3 8 8 C 1.52997 * 109.47181 * 299.99792 * 7 6 4 9 9 C 1.53005 * 109.46871 * 60.00177 * 8 7 6 10 10 C 1.52997 * 109.47448 * 184.99813 * 4 3 2 11 11 H 1.09007 * 109.46964 * 60.00529 * 10 4 3 12 12 C 1.52997 * 109.47331 * 300.00307 * 10 4 3 13 13 N 1.46508 * 109.47190 * 174.99926 * 12 10 4 14 14 S 1.65597 * 119.99829 * 164.99678 * 13 12 10 15 15 O 1.42107 * 104.27475 * 181.06873 * 14 13 12 16 16 O 1.42096 * 104.28301 * 308.92895 * 14 13 12 17 17 C 1.81400 * 104.44840 * 65.00226 * 14 13 12 18 18 C 1.52998 * 109.47316 * 179.97438 * 17 14 13 19 19 C 1.50703 * 109.47306 * 179.97438 * 18 17 14 20 20 H 1.08002 * 119.99848 * 359.97438 * 19 18 17 21 21 C 1.37876 * 119.99773 * 180.02562 * 19 18 17 22 22 N 1.31514 * 119.99616 * 179.97438 * 21 19 18 23 23 Si 1.86804 * 120.00213 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.47021 * 90.00306 * 23 21 19 25 25 H 1.48500 * 109.47074 * 210.00341 * 23 21 19 26 26 H 1.48497 * 109.47058 * 330.00395 * 23 21 19 27 27 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 28 28 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 30 30 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 31 31 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 32 32 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 33 33 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 34 34 H 1.09001 * 109.46924 * 300.00271 * 6 4 3 35 35 H 1.09000 * 109.47104 * 59.99686 * 6 4 3 36 36 H 1.09003 * 109.47165 * 179.97438 * 7 6 4 37 37 H 1.09000 * 109.46818 * 59.99916 * 7 6 4 38 38 H 1.09001 * 109.47615 * 300.00277 * 8 7 6 39 39 H 1.09000 * 109.47599 * 179.97438 * 8 7 6 40 40 H 1.09001 * 109.47099 * 179.97438 * 9 8 7 41 41 H 1.09000 * 109.47443 * 59.99683 * 9 8 7 42 42 H 1.09001 * 109.46966 * 294.99268 * 12 10 4 43 43 H 1.08997 * 109.46984 * 54.99561 * 12 10 4 44 44 H 0.96999 * 119.99747 * 344.99589 * 13 12 10 45 45 H 1.09006 * 109.47242 * 299.99980 * 17 14 13 46 46 H 1.08999 * 109.47428 * 59.99703 * 17 14 13 47 47 H 1.08998 * 109.47048 * 299.99887 * 18 17 14 48 48 H 1.08999 * 109.47025 * 59.99566 * 18 17 14 49 49 H 0.97008 * 119.99728 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9337 0.8530 0.8409 6 6 4.0794 0.8332 -1.3083 7 6 5.6094 0.8327 -1.3087 8 6 6.1199 2.2695 -1.1828 9 6 5.6105 2.8789 0.1249 10 6 4.0799 2.8796 0.1250 11 1 3.7170 3.3137 1.0567 12 6 3.5694 3.7071 -1.0562 13 7 3.9570 5.1083 -0.8747 14 16 3.8733 6.1623 -2.1492 15 8 4.3407 7.3940 -1.6165 16 8 4.5740 5.5037 -3.1953 17 6 2.1039 6.2662 -2.5351 18 6 1.8936 7.2227 -3.7106 19 6 0.4237 7.3086 -4.0317 20 1 -0.2892 6.7376 -3.4552 21 6 -0.0109 8.1152 -5.0620 22 7 -1.2936 8.1897 -5.3424 23 14 1.2222 9.1021 -6.0594 24 1 1.6821 8.2941 -7.2173 25 1 0.5789 10.3477 -6.5493 26 1 2.3858 9.4491 -5.2046 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 3.7161 -0.1906 -1.3979 35 1 3.7157 1.4227 -2.1499 36 1 5.9723 0.3981 -2.2402 37 1 5.9727 0.2429 -0.4672 38 1 5.7565 2.8594 -2.0243 39 1 7.2099 2.2692 -1.1826 40 1 5.9746 3.9023 0.2149 41 1 5.9738 2.2891 0.9665 42 1 4.0037 3.3269 -1.9808 43 1 2.4831 3.6344 -1.1082 44 1 4.2627 5.4185 -0.0079 45 1 1.7311 5.2768 -2.8002 46 1 1.5632 6.6369 -1.6643 47 1 2.2663 8.2120 -3.4452 48 1 2.4344 6.8524 -4.5815 49 1 -1.5994 8.7575 -6.0671 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452039636.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:13 Heat of formation + Delta-G solvation = -144.650884 kcal Electronic energy + Delta-G solvation = -25968.462293 eV Core-core repulsion = 22440.713991 eV Total energy + Delta-G solvation = -3527.748302 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.68456 -38.15653 -37.03753 -36.14617 -35.89654 -35.36466 -33.47494 -31.93575 -31.35122 -27.88440 -27.32775 -26.05538 -23.52519 -23.21167 -22.69331 -21.33333 -20.33331 -19.74177 -19.37185 -18.34479 -17.26832 -17.06226 -16.58828 -16.35210 -16.31369 -15.77727 -15.58001 -15.23340 -15.03170 -14.81747 -14.46984 -14.14778 -13.91012 -13.78143 -13.68115 -13.33105 -13.23535 -13.20627 -13.12054 -13.07213 -12.94844 -12.76927 -12.44528 -12.24255 -12.11928 -12.02403 -11.94902 -11.86806 -11.73129 -11.71017 -11.41721 -11.26024 -10.97966 -10.84599 -10.76569 -10.66724 -10.21761 -8.36821 -6.42421 -0.69361 1.31608 1.33497 1.43622 1.83623 2.29284 2.76059 2.97234 3.25538 3.66043 3.76649 3.80761 3.91341 4.07125 4.17822 4.21490 4.27741 4.34501 4.42784 4.44589 4.53570 4.56534 4.57998 4.66493 4.71316 4.81972 4.86538 4.87407 4.94472 5.06618 5.07443 5.10495 5.12913 5.18432 5.20974 5.25384 5.28479 5.36114 5.46407 5.47105 5.47923 5.50735 5.54873 5.63074 5.70936 6.16486 6.17380 6.63451 7.22023 8.78725 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013521 B = 0.003752 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.369773 B = 7460.340905 C = 8779.883317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.122 4.122 3 C -0.124 4.124 4 C -0.071 4.071 5 H 0.088 0.912 6 C -0.124 4.124 7 C -0.115 4.115 8 C -0.133 4.133 9 C -0.114 4.114 10 C -0.082 4.082 11 H 0.093 0.907 12 C 0.100 3.900 13 N -1.104 6.104 14 S 2.621 3.379 15 O -0.995 6.995 16 O -0.990 6.990 17 C -0.590 4.590 18 C -0.018 4.018 19 C -0.527 4.527 20 H 0.050 0.950 21 C 0.015 3.985 22 N -0.939 5.939 23 Si 0.924 3.076 24 H -0.260 1.260 25 H -0.274 1.274 26 H -0.250 1.250 27 H 0.045 0.955 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.053 0.947 36 H 0.057 0.943 37 H 0.072 0.928 38 H 0.049 0.951 39 H 0.061 0.939 40 H 0.058 0.942 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.077 0.923 44 H 0.425 0.575 45 H 0.138 0.862 46 H 0.141 0.859 47 H 0.031 0.969 48 H 0.031 0.969 49 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.005 -18.143 14.835 26.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.159 4.159 3 C -0.161 4.161 4 C -0.090 4.090 5 H 0.106 0.894 6 C -0.162 4.162 7 C -0.152 4.152 8 C -0.170 4.170 9 C -0.151 4.151 10 C -0.102 4.102 11 H 0.111 0.889 12 C -0.026 4.026 13 N -0.867 5.867 14 S 2.716 3.284 15 O -0.986 6.986 16 O -0.980 6.980 17 C -0.722 4.722 18 C -0.057 4.057 19 C -0.566 4.566 20 H 0.068 0.932 21 C -0.184 4.184 22 N -0.579 5.579 23 Si 0.746 3.254 24 H -0.185 1.185 25 H -0.199 1.199 26 H -0.174 1.174 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.091 0.909 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.097 0.903 42 H 0.093 0.907 43 H 0.095 0.905 44 H 0.262 0.738 45 H 0.157 0.843 46 H 0.159 0.841 47 H 0.050 0.950 48 H 0.049 0.951 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 12.581 -17.706 14.142 25.918 hybrid contribution -0.614 0.684 -0.396 1.000 sum 11.967 -17.022 13.746 24.938 Atomic orbital electron populations 1.21812 0.96439 1.01652 1.01555 1.21547 0.95328 0.96731 1.02316 1.21793 0.94822 0.97232 1.02279 1.21102 0.94780 0.94502 0.98578 0.89385 1.21747 0.95501 1.01389 0.97518 1.21499 0.95671 0.96082 1.01964 1.21654 1.00323 0.96856 0.98177 1.21567 0.94627 1.01020 0.97887 1.21359 0.95853 0.95346 0.97594 0.88926 1.21866 1.00336 0.79293 1.01073 1.55228 1.83194 1.20334 1.27903 1.04407 0.77647 0.72720 0.73599 1.93517 1.80322 1.45948 1.78780 1.93513 1.70905 1.75333 1.58275 1.30304 1.23734 1.09531 1.08593 1.19371 0.98000 0.94937 0.93346 1.21171 0.91492 1.27272 1.16650 0.93211 1.25857 0.96951 0.97479 0.98121 1.70009 1.15683 1.40674 1.31557 0.86042 0.80124 0.79165 0.80020 1.18502 1.19854 1.17383 0.93582 0.92469 0.92755 0.91365 0.91822 0.92413 0.91335 0.90791 0.92843 0.92407 0.90931 0.93263 0.92074 0.92291 0.90273 0.90712 0.90459 0.73834 0.84346 0.84128 0.95042 0.95109 0.92120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 9.91 71.98 0.71 -1.51 16 2 C -0.12 -1.55 5.69 30.59 0.17 -1.37 16 3 C -0.12 -1.68 4.19 30.59 0.13 -1.55 16 4 C -0.07 -0.89 1.96 -10.80 -0.02 -0.92 16 5 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 6 C -0.12 -1.80 4.68 30.59 0.14 -1.66 16 7 C -0.11 -1.68 5.92 30.59 0.18 -1.50 16 8 C -0.13 -2.35 5.65 30.59 0.17 -2.18 16 9 C -0.11 -1.71 5.34 30.62 0.16 -1.54 16 10 C -0.08 -1.18 2.22 -10.78 -0.02 -1.20 16 11 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 12 C 0.10 1.97 4.60 86.38 0.40 2.37 16 13 N -1.10 -24.69 5.42 -187.48 -1.02 -25.70 16 14 S 2.62 85.21 5.46 -56.49 -0.31 84.90 16 15 O -1.00 -37.95 18.08 -127.65 -2.31 -40.26 16 16 O -0.99 -37.60 17.50 -127.65 -2.23 -39.83 16 17 C -0.59 -21.04 6.01 71.98 0.43 -20.61 16 18 C -0.02 -0.82 4.05 29.85 0.12 -0.70 16 19 C -0.53 -29.82 9.66 25.60 0.25 -29.58 16 20 H 0.05 3.00 7.99 -2.91 -0.02 2.98 16 21 C 0.01 0.84 5.47 84.65 0.46 1.31 16 22 N -0.94 -57.80 13.96 21.45 0.30 -57.51 16 23 Si 0.92 44.00 27.47 68.60 1.88 45.89 16 24 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 25 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 26 H -0.25 -11.35 6.54 99.48 0.65 -10.70 16 27 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.05 0.74 8.14 -2.39 -0.02 0.73 16 30 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.06 0.81 6.56 -2.39 -0.02 0.80 16 32 H 0.06 0.92 6.59 -2.39 -0.02 0.90 16 33 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.07 0.94 6.56 -2.39 -0.02 0.92 16 35 H 0.05 0.94 6.54 -2.39 -0.02 0.92 16 36 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.05 1.12 6.32 -2.39 -0.02 1.11 16 39 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.06 0.96 7.54 -2.39 -0.02 0.94 16 41 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.07 1.69 4.38 -2.39 -0.01 1.68 16 43 H 0.08 1.39 6.29 -2.39 -0.02 1.37 16 44 H 0.42 7.56 8.34 -96.75 -0.81 6.75 16 45 H 0.14 4.44 8.14 -2.39 -0.02 4.42 16 46 H 0.14 4.55 8.14 -2.39 -0.02 4.53 16 47 H 0.03 1.47 7.20 -2.39 -0.02 1.46 16 48 H 0.03 1.42 7.57 -2.39 -0.02 1.40 16 49 H 0.27 15.46 8.31 -92.70 -0.77 14.68 16 Total: -1.00 -72.31 380.04 -0.33 -72.64 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: 0.06 Total: 20.52 kcal Atomic # 6 Polarization: -63.94 SS G_CDS: 3.29 Total: -60.65 kcal Atomic # 7 Polarization: -82.49 SS G_CDS: -0.72 Total: -83.21 kcal Atomic # 8 Polarization: -75.55 SS G_CDS: -4.54 Total: -80.10 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 1.88 Total: 45.89 kcal Atomic # 16 Polarization: 85.21 SS G_CDS: -0.31 Total: 84.90 kcal Total: -72.31 -0.33 -72.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452039636.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.012 kcal (2) G-P(sol) polarization free energy of solvation -72.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds