Wall clock time and date at job start Tue Mar 31 2020 12:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47485 * 2 1 4 4 C 1.52996 * 109.47183 * 179.97438 * 3 2 1 5 5 H 1.08993 * 109.47549 * 304.99996 * 4 3 2 6 6 C 1.53003 * 109.46997 * 65.00210 * 4 3 2 7 7 C 1.53005 * 109.47009 * 180.02562 * 6 4 3 8 8 C 1.52999 * 109.46935 * 299.99407 * 7 6 4 9 9 C 1.53003 * 109.46788 * 60.00457 * 8 7 6 10 10 C 1.52996 * 109.46997 * 299.99630 * 9 8 7 11 11 H 1.08998 * 109.47277 * 299.99817 * 10 9 8 12 12 C 1.53005 * 109.46843 * 180.02562 * 10 9 8 13 13 N 1.46502 * 109.47538 * 65.00274 * 12 10 9 14 14 S 1.65595 * 120.00123 * 164.99810 * 13 12 10 15 15 O 1.42093 * 104.27935 * 308.92604 * 14 13 12 16 16 O 1.42105 * 104.27413 * 181.06655 * 14 13 12 17 17 C 1.81401 * 104.44822 * 65.00073 * 14 13 12 18 18 C 1.52997 * 109.47149 * 179.97438 * 17 14 13 19 19 C 1.50697 * 109.47466 * 179.97438 * 18 17 14 20 20 H 1.08001 * 119.99890 * 0.02562 * 19 18 17 21 21 C 1.37876 * 120.00428 * 179.97438 * 19 18 17 22 22 N 1.31517 * 120.00362 * 180.02562 * 21 19 18 23 23 Si 1.86804 * 119.99850 * 359.97438 * 21 19 18 24 24 H 1.48504 * 109.47052 * 89.99717 * 23 21 19 25 25 H 1.48495 * 109.47307 * 209.99656 * 23 21 19 26 26 H 1.48500 * 109.47143 * 330.00164 * 23 21 19 27 27 H 1.09001 * 109.47743 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47192 * 300.00369 * 1 2 3 29 29 H 1.09003 * 109.46809 * 59.99890 * 1 2 3 30 30 H 1.08995 * 109.47317 * 239.99419 * 2 1 3 31 31 H 1.09010 * 109.46634 * 119.99771 * 2 1 3 32 32 H 1.09004 * 109.47206 * 59.99641 * 3 2 1 33 33 H 1.09003 * 109.47187 * 299.99879 * 3 2 1 34 34 H 1.08998 * 109.46958 * 59.99987 * 6 4 3 35 35 H 1.08996 * 109.46701 * 299.99528 * 6 4 3 36 36 H 1.09002 * 109.46683 * 180.02562 * 7 6 4 37 37 H 1.08998 * 109.47380 * 60.00113 * 7 6 4 38 38 H 1.08998 * 109.47662 * 300.00532 * 8 7 6 39 39 H 1.08999 * 109.46811 * 180.02562 * 8 7 6 40 40 H 1.09007 * 109.47098 * 179.97438 * 9 8 7 41 41 H 1.09000 * 109.47536 * 60.00127 * 9 8 7 42 42 H 1.09001 * 109.47084 * 304.99558 * 12 10 9 43 43 H 1.09008 * 109.47217 * 184.99963 * 12 10 9 44 44 H 0.96997 * 119.99542 * 344.99796 * 13 12 10 45 45 H 1.09002 * 109.47085 * 299.99812 * 17 14 13 46 46 H 1.09001 * 109.47417 * 59.99938 * 17 14 13 47 47 H 1.09002 * 109.47153 * 299.99990 * 18 17 14 48 48 H 1.08998 * 109.47533 * 59.99620 * 18 17 14 49 49 H 0.96994 * 119.99814 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4423 0.0006 5 1 3.9330 0.8530 0.8426 6 6 4.0805 0.8325 -1.3065 7 6 5.6106 0.8318 -1.3055 8 6 6.1211 2.2686 -1.1796 9 6 5.6106 2.8785 0.1275 10 6 4.0806 2.8791 0.1266 11 1 3.7180 3.4687 -0.7154 12 6 3.5702 3.4895 1.4334 13 7 3.9582 4.9007 1.4977 14 16 3.2405 5.9075 2.5993 15 8 1.8478 5.7034 2.4054 16 8 3.8362 7.1745 2.3562 17 6 3.7606 5.2586 4.2115 18 6 3.1552 6.1151 5.3254 19 6 3.5867 5.5757 6.6647 20 1 4.2289 4.7089 6.7163 21 6 3.1625 6.1893 7.8243 22 7 3.5395 5.7189 8.9931 23 14 2.0535 7.6899 7.7350 24 1 0.6331 7.2565 7.7390 25 1 2.3076 8.5638 8.9084 26 1 2.3379 8.4421 6.4867 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8901 32 1 1.6767 1.9563 0.8900 33 1 1.6768 1.9563 -0.8900 34 1 3.7176 1.4219 -2.1484 35 1 3.7172 -0.1912 -1.3959 36 1 5.9742 0.3978 -2.2369 37 1 5.9732 0.2422 -0.4636 38 1 5.7585 2.8583 -2.0216 39 1 7.2111 2.2682 -1.1794 40 1 5.9746 3.9020 0.2175 41 1 5.9732 2.2889 0.9695 42 1 4.0040 2.9545 2.2782 43 1 2.4837 3.4094 1.4719 44 1 4.6355 5.2453 0.8949 45 1 3.4174 4.2294 4.3168 46 1 4.8480 5.2879 4.2814 47 1 3.4988 7.1441 5.2199 48 1 2.0678 6.0862 5.2557 49 1 3.2408 6.1504 9.8088 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452039639.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:22 Heat of formation + Delta-G solvation = -126.195461 kcal Electronic energy + Delta-G solvation = -25547.488534 eV Core-core repulsion = 22020.540519 eV Total energy + Delta-G solvation = -3526.948015 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.74430 -36.69570 -35.59880 -35.37679 -34.96690 -33.94281 -31.47707 -31.30861 -30.73197 -26.57812 -25.96418 -25.25731 -22.82861 -21.42966 -21.23094 -20.73169 -20.02356 -18.95874 -17.60411 -16.92384 -16.29082 -15.63543 -15.48395 -15.28501 -14.90889 -14.69703 -14.39471 -14.28898 -13.99178 -13.71601 -13.37470 -13.30738 -13.11701 -12.80024 -12.62956 -12.20602 -11.96411 -11.89027 -11.71736 -11.67847 -11.59866 -11.41920 -11.31745 -11.27197 -11.23954 -11.17815 -11.14794 -10.81168 -10.64788 -10.44919 -10.16719 -10.10690 -10.05803 -9.75910 -9.47127 -9.12178 -8.66055 -6.16412 -4.17592 0.69790 3.06111 3.26872 3.34221 3.38636 4.14207 4.30883 4.35086 4.36154 4.44327 4.63601 4.74356 4.79784 4.92956 4.96947 5.02038 5.04729 5.15448 5.20116 5.23888 5.27989 5.37496 5.41500 5.45198 5.53672 5.54672 5.57658 5.64020 5.68029 5.71728 5.75962 5.85644 5.87160 5.90667 5.96397 5.98039 6.05333 6.11358 6.13605 6.22096 6.29044 6.32369 6.82469 6.93518 7.07809 7.55225 8.36817 8.84694 9.43375 10.95982 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014997 B = 0.003204 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.612009 B = 8737.984709 C = 9323.595826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.124 4.124 3 C -0.125 4.125 4 C -0.081 4.081 5 H 0.075 0.925 6 C -0.113 4.113 7 C -0.120 4.120 8 C -0.119 4.119 9 C -0.118 4.118 10 C -0.087 4.087 11 H 0.078 0.922 12 C 0.113 3.887 13 N -1.125 6.125 14 S 2.591 3.409 15 O -0.967 6.967 16 O -0.969 6.969 17 C -0.583 4.583 18 C -0.007 4.007 19 C -0.519 4.519 20 H 0.078 0.922 21 C 0.071 3.929 22 N -0.896 5.896 23 Si 0.869 3.131 24 H -0.271 1.271 25 H -0.282 1.282 26 H -0.262 1.262 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.084 0.916 44 H 0.412 0.588 45 H 0.124 0.876 46 H 0.126 0.874 47 H 0.032 0.968 48 H 0.028 0.972 49 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.793 -11.846 -22.435 25.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.162 4.162 3 C -0.162 4.162 4 C -0.100 4.100 5 H 0.093 0.907 6 C -0.151 4.151 7 C -0.158 4.158 8 C -0.157 4.157 9 C -0.155 4.155 10 C -0.107 4.107 11 H 0.097 0.903 12 C -0.013 4.013 13 N -0.883 5.883 14 S 2.688 3.312 15 O -0.957 6.957 16 O -0.959 6.959 17 C -0.716 4.716 18 C -0.047 4.047 19 C -0.558 4.558 20 H 0.096 0.904 21 C -0.131 4.131 22 N -0.534 5.534 23 Si 0.696 3.304 24 H -0.197 1.197 25 H -0.208 1.208 26 H -0.186 1.186 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.102 0.898 44 H 0.246 0.754 45 H 0.142 0.858 46 H 0.145 0.855 47 H 0.050 0.950 48 H 0.046 0.954 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.069 -11.147 -22.364 25.011 hybrid contribution 0.151 0.386 0.266 0.493 sum 1.220 -10.761 -22.098 24.609 Atomic orbital electron populations 1.21793 0.96014 1.01397 1.02023 1.21566 0.95766 0.96954 1.01894 1.21819 0.94650 0.96955 1.02808 1.21168 0.95150 0.95229 0.98476 0.90678 1.21616 0.95261 1.00839 0.97344 1.21550 0.95819 0.96869 1.01565 1.21530 1.00134 0.96182 0.97840 1.21625 0.94704 1.01181 0.98010 1.21363 0.95687 0.96234 0.97405 0.90323 1.21496 1.00809 0.80536 0.98438 1.55722 1.57868 1.21115 1.53616 1.05533 0.74635 0.73982 0.77057 1.93541 1.31353 1.85844 1.84963 1.93557 1.78375 1.39362 1.84633 1.30290 1.11710 1.11888 1.17714 1.19406 0.96183 0.94909 0.94163 1.20850 1.32059 1.15315 0.87580 0.90435 1.24988 0.95755 0.97100 0.95278 1.69881 1.45064 1.40948 0.97496 0.86924 0.81614 0.83451 0.78457 1.19666 1.20767 1.18608 0.93008 0.92476 0.92887 0.92065 0.92019 0.91015 0.91843 0.92057 0.91718 0.92317 0.91965 0.92101 0.92104 0.91695 0.91460 0.91631 0.89820 0.75436 0.85781 0.85529 0.94951 0.95376 0.92389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.91 37.16 0.37 -0.83 16 2 C -0.12 -0.93 5.69 -26.73 -0.15 -1.08 16 3 C -0.12 -1.02 4.47 -26.74 -0.12 -1.14 16 4 C -0.08 -0.62 1.72 -90.62 -0.16 -0.77 16 5 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 6 C -0.11 -0.76 4.96 -26.73 -0.13 -0.90 16 7 C -0.12 -0.80 5.92 -26.73 -0.16 -0.95 16 8 C -0.12 -0.83 5.92 -26.73 -0.16 -0.99 16 9 C -0.12 -0.93 5.08 -26.73 -0.14 -1.06 16 10 C -0.09 -0.74 1.82 -90.62 -0.17 -0.90 16 11 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 12 C 0.11 1.20 5.31 -4.04 -0.02 1.17 16 13 N -1.12 -13.60 5.76 -10.61 -0.06 -13.66 16 14 S 2.59 43.50 5.46 -107.50 -0.59 42.91 16 15 O -0.97 -18.83 17.50 -57.54 -1.01 -19.83 16 16 O -0.97 -19.05 18.08 -57.54 -1.04 -20.09 16 17 C -0.58 -10.57 6.01 37.16 0.22 -10.35 16 18 C -0.01 -0.17 4.05 -27.89 -0.11 -0.29 16 19 C -0.52 -14.49 9.66 -34.44 -0.33 -14.83 16 20 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 21 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 22 N -0.90 -27.08 13.96 55.43 0.77 -26.31 16 23 Si 0.87 21.53 27.47 -169.99 -4.67 16.86 16 24 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.26 -6.28 6.54 56.52 0.37 -5.91 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.41 6.57 -51.93 -0.34 0.07 16 31 H 0.06 0.47 8.14 -51.92 -0.42 0.04 16 32 H 0.07 0.66 6.07 -51.93 -0.32 0.34 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.41 6.57 -51.93 -0.34 0.07 16 36 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.51 6.90 -51.92 -0.36 0.15 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.08 0.94 5.63 -51.92 -0.29 0.65 16 44 H 0.41 4.22 7.37 -34.47 -0.25 3.96 16 45 H 0.12 2.02 8.14 -51.92 -0.42 1.60 16 46 H 0.13 2.10 8.14 -51.92 -0.42 1.67 16 47 H 0.03 0.77 7.20 -51.93 -0.37 0.40 16 48 H 0.03 0.66 7.57 -51.93 -0.39 0.26 16 49 H 0.27 7.51 8.31 -40.82 -0.34 7.18 16 LS Contribution 385.42 15.07 5.81 5.81 Total: -1.00 -33.83 385.42 -10.95 -44.78 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -9.02 Total: 0.47 kcal Atomic # 6 Polarization: -29.80 SS G_CDS: -1.15 Total: -30.95 kcal Atomic # 7 Polarization: -40.68 SS G_CDS: 0.71 Total: -39.97 kcal Atomic # 8 Polarization: -37.87 SS G_CDS: -2.05 Total: -39.92 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.67 Total: 16.86 kcal Atomic # 16 Polarization: 43.50 SS G_CDS: -0.59 Total: 42.91 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.83 -10.95 -44.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452039639.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.414 kcal (2) G-P(sol) polarization free energy of solvation -33.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds