Wall clock time and date at job start Tue Mar 31 2020 12:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47121 * 2 1 4 4 C 1.52997 * 109.47276 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47140 * 54.99820 * 4 3 2 6 6 C 1.52996 * 109.47165 * 294.99866 * 4 3 2 7 7 C 1.52997 * 109.47131 * 300.00167 * 6 4 3 8 8 C 1.52999 * 109.46991 * 299.99311 * 7 6 4 9 9 C 1.53006 * 109.46626 * 60.00378 * 8 7 6 10 10 C 1.52997 * 109.47127 * 299.99539 * 9 8 7 11 11 H 1.08996 * 109.46952 * 300.00302 * 10 9 8 12 12 C 1.52996 * 109.47131 * 179.97438 * 10 9 8 13 13 N 1.46501 * 109.47049 * 65.00110 * 12 10 9 14 14 S 1.65600 * 120.00348 * 164.99646 * 13 12 10 15 15 O 1.42097 * 104.27818 * 181.07317 * 14 13 12 16 16 O 1.42095 * 104.27769 * 308.93580 * 14 13 12 17 17 C 1.81404 * 104.44766 * 65.00261 * 14 13 12 18 18 C 1.52997 * 109.47351 * 180.02562 * 17 14 13 19 19 C 1.50699 * 109.47121 * 179.97438 * 18 17 14 20 20 H 1.08003 * 120.00062 * 0.02562 * 19 18 17 21 21 C 1.37875 * 119.99818 * 179.97438 * 19 18 17 22 22 N 1.31511 * 120.00302 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99874 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47352 * 90.00483 * 23 21 19 25 25 H 1.48503 * 109.47171 * 210.00234 * 23 21 19 26 26 H 1.48507 * 109.47334 * 330.00148 * 23 21 19 27 27 H 1.09002 * 109.47069 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46990 * 299.99390 * 1 2 3 29 29 H 1.09001 * 109.47624 * 59.99926 * 1 2 3 30 30 H 1.09002 * 109.46642 * 240.00262 * 2 1 3 31 31 H 1.09001 * 109.47344 * 120.00544 * 2 1 3 32 32 H 1.08998 * 109.47375 * 60.00119 * 3 2 1 33 33 H 1.09000 * 109.46912 * 299.99941 * 3 2 1 34 34 H 1.09001 * 109.46993 * 60.00298 * 6 4 3 35 35 H 1.09000 * 109.47380 * 179.97438 * 6 4 3 36 36 H 1.09002 * 109.47153 * 179.97438 * 7 6 4 37 37 H 1.08993 * 109.47194 * 60.00154 * 7 6 4 38 38 H 1.08993 * 109.47839 * 300.00447 * 8 7 6 39 39 H 1.09000 * 109.47160 * 180.02562 * 8 7 6 40 40 H 1.09001 * 109.46801 * 59.99811 * 9 8 7 41 41 H 1.09001 * 109.46998 * 179.97438 * 9 8 7 42 42 H 1.08996 * 109.47548 * 185.00027 * 12 10 9 43 43 H 1.08997 * 109.47395 * 305.00575 * 12 10 9 44 44 H 0.97003 * 120.00328 * 345.00161 * 13 12 10 45 45 H 1.09000 * 109.47137 * 300.00349 * 17 14 13 46 46 H 1.09002 * 109.47163 * 59.99816 * 17 14 13 47 47 H 1.09000 * 109.47133 * 300.00165 * 18 17 14 48 48 H 1.08999 * 109.46792 * 59.99598 * 18 17 14 49 49 H 0.97001 * 120.00055 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9330 0.8532 -0.8427 6 6 4.0805 0.8327 1.3064 7 6 3.5710 1.6599 2.4883 8 6 4.0810 3.0969 2.3626 9 6 3.5704 3.7067 1.0555 10 6 4.0799 2.8795 -0.1264 11 1 5.1699 2.8796 -0.1268 12 6 3.5689 3.4889 -1.4334 13 7 4.1524 4.8208 -1.6122 14 16 4.0830 5.5635 -3.0907 15 8 4.7574 6.7987 -2.8943 16 8 4.5855 4.5902 -3.9958 17 6 2.3132 5.8427 -3.3744 18 6 2.1157 6.5315 -4.7261 19 6 0.6454 6.7628 -4.9620 20 1 -0.0761 6.4502 -4.2216 21 6 0.2213 7.3745 -6.1226 22 7 1.0997 7.7556 -7.0240 23 14 -1.6012 7.6619 -6.4147 24 1 -1.9870 8.9880 -5.8689 25 1 -1.8805 7.6265 -7.8728 26 1 -2.3852 6.5996 -5.7346 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 3.7173 -0.1911 1.3959 35 1 5.1705 0.8323 1.3058 36 1 3.9344 1.2252 3.4195 37 1 2.4810 1.6598 2.4888 38 1 5.1709 3.0970 2.3621 39 1 3.7184 3.6861 3.2049 40 1 2.4804 3.7067 1.0561 41 1 3.9334 4.7306 0.9661 42 1 3.8569 2.8509 -2.2689 43 1 2.4826 3.5703 -1.3960 44 1 4.5795 5.2676 -0.8647 45 1 1.7899 4.8865 -3.3743 46 1 1.9136 6.4755 -2.5819 47 1 2.6390 7.4877 -4.7266 48 1 2.5153 5.8983 -5.5183 49 1 0.8013 8.1857 -7.8406 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452039641.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:26 Heat of formation + Delta-G solvation = -126.557246 kcal Electronic energy + Delta-G solvation = -25681.961149 eV Core-core repulsion = 22154.997447 eV Total energy + Delta-G solvation = -3526.963703 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.04126 -36.56126 -35.51853 -35.29835 -34.48294 -33.87961 -31.24214 -31.14862 -30.69546 -26.73255 -25.59048 -25.23627 -22.74844 -21.91970 -21.66861 -21.23550 -18.92866 -18.48343 -17.41163 -16.67828 -16.23845 -15.81180 -15.59329 -15.26985 -14.80685 -14.62758 -14.53809 -14.12713 -14.01769 -13.69205 -13.33654 -13.14307 -12.84230 -12.74690 -12.50920 -12.22788 -12.02643 -11.75393 -11.70426 -11.55981 -11.47034 -11.44499 -11.37168 -11.24825 -11.07691 -11.06945 -10.94910 -10.65126 -10.40270 -10.37594 -10.30700 -10.15362 -10.11097 -9.75622 -9.42056 -8.97403 -8.49718 -6.11772 -4.17275 0.83583 3.19756 3.26300 3.32522 3.35161 4.26373 4.32886 4.38155 4.42932 4.45546 4.74251 4.80535 4.82604 4.92610 4.96657 5.03353 5.10683 5.21349 5.23409 5.24877 5.33951 5.39967 5.44404 5.47694 5.52752 5.60028 5.67671 5.69275 5.74172 5.76062 5.79690 5.84174 5.89996 5.93447 5.95394 6.01111 6.06268 6.16667 6.20927 6.24099 6.34525 6.50577 7.14675 7.31429 7.37804 7.81185 8.18485 8.86117 9.47405 10.99292 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013476 B = 0.003382 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.235123 B = 8277.589916 C = 9608.576895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.126 4.126 4 C -0.082 4.082 5 H 0.074 0.926 6 C -0.114 4.114 7 C -0.122 4.122 8 C -0.119 4.119 9 C -0.119 4.119 10 C -0.087 4.087 11 H 0.078 0.922 12 C 0.117 3.883 13 N -1.127 6.127 14 S 2.593 3.407 15 O -0.969 6.969 16 O -0.968 6.968 17 C -0.589 4.589 18 C 0.027 3.973 19 C -0.520 4.520 20 H 0.061 0.939 21 C 0.058 3.942 22 N -0.890 5.890 23 Si 0.900 3.100 24 H -0.279 1.279 25 H -0.284 1.284 26 H -0.273 1.273 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.056 0.944 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.079 0.921 43 H 0.066 0.934 44 H 0.411 0.589 45 H 0.118 0.882 46 H 0.120 0.880 47 H 0.033 0.967 48 H 0.033 0.967 49 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.446 -14.810 19.891 25.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.162 4.162 3 C -0.163 4.163 4 C -0.101 4.101 5 H 0.092 0.908 6 C -0.151 4.151 7 C -0.159 4.159 8 C -0.156 4.156 9 C -0.157 4.157 10 C -0.107 4.107 11 H 0.097 0.903 12 C -0.010 4.010 13 N -0.885 5.885 14 S 2.691 3.309 15 O -0.960 6.960 16 O -0.958 6.958 17 C -0.723 4.723 18 C -0.011 4.011 19 C -0.559 4.559 20 H 0.079 0.921 21 C -0.145 4.145 22 N -0.528 5.528 23 Si 0.727 3.273 24 H -0.205 1.205 25 H -0.210 1.210 26 H -0.198 1.198 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.097 0.903 43 H 0.084 0.916 44 H 0.244 0.756 45 H 0.136 0.864 46 H 0.138 0.862 47 H 0.051 0.949 48 H 0.052 0.948 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.166 -14.631 19.025 24.359 hybrid contribution -1.463 0.347 0.326 1.538 sum 2.703 -14.284 19.351 24.203 Atomic orbital electron populations 1.21787 0.96051 1.01393 1.01938 1.21571 0.95691 0.97105 1.01871 1.21884 0.94722 0.96922 1.02788 1.21140 0.95697 0.95158 0.98106 0.90756 1.21567 1.00385 0.98914 0.94243 1.21575 1.01106 0.95409 0.97799 1.21518 1.00699 0.95980 0.97407 1.21655 1.01387 0.98821 0.93802 1.21344 1.00885 0.94695 0.93748 0.90332 1.21426 0.97596 0.83230 0.98721 1.55800 1.74109 1.27703 1.30912 1.05499 0.79070 0.73585 0.72785 1.93548 1.72871 1.45031 1.84538 1.93534 1.78353 1.60896 1.63005 1.30439 1.21046 1.10236 1.10558 1.18961 0.99832 0.95719 0.86633 1.21002 0.90997 1.39846 1.04079 0.92070 1.25067 0.98164 0.95347 0.95921 1.69954 1.33809 1.40049 1.09036 0.86475 0.84683 0.78663 0.77487 1.20480 1.21010 1.19765 0.93046 0.92938 0.92516 0.92093 0.92067 0.91155 0.91336 0.91761 0.92138 0.92479 0.91590 0.92135 0.92183 0.91245 0.91795 0.90252 0.91555 0.75558 0.86389 0.86151 0.94862 0.94827 0.92538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.91 37.16 0.37 -0.79 16 2 C -0.12 -0.92 5.69 -26.73 -0.15 -1.07 16 3 C -0.13 -0.98 3.76 -26.73 -0.10 -1.08 16 4 C -0.08 -0.64 2.19 -90.62 -0.20 -0.84 16 5 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 6 C -0.11 -0.78 5.21 -26.73 -0.14 -0.92 16 7 C -0.12 -0.81 5.65 -26.73 -0.15 -0.96 16 8 C -0.12 -0.84 5.92 -26.73 -0.16 -1.00 16 9 C -0.12 -0.96 4.80 -26.73 -0.13 -1.09 16 10 C -0.09 -0.76 2.07 -90.62 -0.19 -0.95 16 11 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 12 C 0.12 1.28 5.02 -4.04 -0.02 1.26 16 13 N -1.13 -14.37 5.76 -10.62 -0.06 -14.43 16 14 S 2.59 46.32 5.46 -107.50 -0.59 45.73 16 15 O -0.97 -20.25 18.08 -57.54 -1.04 -21.29 16 16 O -0.97 -20.20 17.50 -57.54 -1.01 -21.21 16 17 C -0.59 -11.21 6.01 37.16 0.22 -10.99 16 18 C 0.03 0.71 4.98 -27.89 -0.14 0.57 16 19 C -0.52 -14.37 9.11 -34.44 -0.31 -14.69 16 20 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 21 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 22 N -0.89 -26.55 13.29 55.43 0.74 -25.82 16 23 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 26 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.41 6.57 -51.93 -0.34 0.07 16 32 H 0.07 0.53 4.83 -51.93 -0.25 0.28 16 33 H 0.07 0.59 6.28 -51.93 -0.33 0.26 16 34 H 0.06 0.41 6.57 -51.93 -0.34 0.07 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.07 0.45 6.32 -51.93 -0.33 0.12 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.07 0.56 6.54 -51.93 -0.34 0.22 16 41 H 0.06 0.52 6.90 -51.93 -0.36 0.16 16 42 H 0.08 0.94 7.69 -51.93 -0.40 0.54 16 43 H 0.07 0.66 6.59 -51.93 -0.34 0.32 16 44 H 0.41 4.46 7.37 -34.46 -0.25 4.21 16 45 H 0.12 2.00 8.14 -51.92 -0.42 1.58 16 46 H 0.12 2.06 8.14 -51.92 -0.42 1.64 16 47 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 48 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 49 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 382.43 15.07 5.76 5.76 Total: -1.00 -34.05 382.43 -11.15 -45.20 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -8.74 Total: 0.89 kcal Atomic # 6 Polarization: -29.82 SS G_CDS: -1.19 Total: -31.01 kcal Atomic # 7 Polarization: -40.92 SS G_CDS: 0.68 Total: -40.25 kcal Atomic # 8 Polarization: -40.45 SS G_CDS: -2.05 Total: -42.50 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: 46.32 SS G_CDS: -0.59 Total: 45.73 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.05 -11.15 -45.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452039641.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.359 kcal (2) G-P(sol) polarization free energy of solvation -34.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds