Wall clock time and date at job start Tue Mar 31 2020 12:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47121 * 2 1 4 4 C 1.52997 * 109.47276 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47140 * 54.99820 * 4 3 2 6 6 C 1.52996 * 109.47165 * 294.99866 * 4 3 2 7 7 C 1.52997 * 109.47131 * 300.00167 * 6 4 3 8 8 C 1.52999 * 109.46991 * 299.99311 * 7 6 4 9 9 C 1.53006 * 109.46626 * 60.00378 * 8 7 6 10 10 C 1.52997 * 109.47127 * 299.99539 * 9 8 7 11 11 H 1.08996 * 109.46952 * 300.00302 * 10 9 8 12 12 C 1.52996 * 109.47131 * 179.97438 * 10 9 8 13 13 N 1.46501 * 109.47049 * 65.00110 * 12 10 9 14 14 S 1.65600 * 120.00348 * 164.99646 * 13 12 10 15 15 O 1.42097 * 104.27818 * 181.07317 * 14 13 12 16 16 O 1.42095 * 104.27769 * 308.93580 * 14 13 12 17 17 C 1.81404 * 104.44766 * 65.00261 * 14 13 12 18 18 C 1.52997 * 109.47351 * 180.02562 * 17 14 13 19 19 C 1.50699 * 109.47121 * 179.97438 * 18 17 14 20 20 H 1.08003 * 120.00062 * 0.02562 * 19 18 17 21 21 C 1.37875 * 119.99818 * 179.97438 * 19 18 17 22 22 N 1.31511 * 120.00302 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99874 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47352 * 90.00483 * 23 21 19 25 25 H 1.48503 * 109.47171 * 210.00234 * 23 21 19 26 26 H 1.48507 * 109.47334 * 330.00148 * 23 21 19 27 27 H 1.09002 * 109.47069 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46990 * 299.99390 * 1 2 3 29 29 H 1.09001 * 109.47624 * 59.99926 * 1 2 3 30 30 H 1.09002 * 109.46642 * 240.00262 * 2 1 3 31 31 H 1.09001 * 109.47344 * 120.00544 * 2 1 3 32 32 H 1.08998 * 109.47375 * 60.00119 * 3 2 1 33 33 H 1.09000 * 109.46912 * 299.99941 * 3 2 1 34 34 H 1.09001 * 109.46993 * 60.00298 * 6 4 3 35 35 H 1.09000 * 109.47380 * 179.97438 * 6 4 3 36 36 H 1.09002 * 109.47153 * 179.97438 * 7 6 4 37 37 H 1.08993 * 109.47194 * 60.00154 * 7 6 4 38 38 H 1.08993 * 109.47839 * 300.00447 * 8 7 6 39 39 H 1.09000 * 109.47160 * 180.02562 * 8 7 6 40 40 H 1.09001 * 109.46801 * 59.99811 * 9 8 7 41 41 H 1.09001 * 109.46998 * 179.97438 * 9 8 7 42 42 H 1.08996 * 109.47548 * 185.00027 * 12 10 9 43 43 H 1.08997 * 109.47395 * 305.00575 * 12 10 9 44 44 H 0.97003 * 120.00328 * 345.00161 * 13 12 10 45 45 H 1.09000 * 109.47137 * 300.00349 * 17 14 13 46 46 H 1.09002 * 109.47163 * 59.99816 * 17 14 13 47 47 H 1.09000 * 109.47133 * 300.00165 * 18 17 14 48 48 H 1.08999 * 109.46792 * 59.99598 * 18 17 14 49 49 H 0.97001 * 120.00055 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9330 0.8532 -0.8427 6 6 4.0805 0.8327 1.3064 7 6 3.5710 1.6599 2.4883 8 6 4.0810 3.0969 2.3626 9 6 3.5704 3.7067 1.0555 10 6 4.0799 2.8795 -0.1264 11 1 5.1699 2.8796 -0.1268 12 6 3.5689 3.4889 -1.4334 13 7 4.1524 4.8208 -1.6122 14 16 4.0830 5.5635 -3.0907 15 8 4.7574 6.7987 -2.8943 16 8 4.5855 4.5902 -3.9958 17 6 2.3132 5.8427 -3.3744 18 6 2.1157 6.5315 -4.7261 19 6 0.6454 6.7628 -4.9620 20 1 -0.0761 6.4502 -4.2216 21 6 0.2213 7.3745 -6.1226 22 7 1.0997 7.7556 -7.0240 23 14 -1.6012 7.6619 -6.4147 24 1 -1.9870 8.9880 -5.8689 25 1 -1.8805 7.6265 -7.8728 26 1 -2.3852 6.5996 -5.7346 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 3.7173 -0.1911 1.3959 35 1 5.1705 0.8323 1.3058 36 1 3.9344 1.2252 3.4195 37 1 2.4810 1.6598 2.4888 38 1 5.1709 3.0970 2.3621 39 1 3.7184 3.6861 3.2049 40 1 2.4804 3.7067 1.0561 41 1 3.9334 4.7306 0.9661 42 1 3.8569 2.8509 -2.2689 43 1 2.4826 3.5703 -1.3960 44 1 4.5795 5.2676 -0.8647 45 1 1.7899 4.8865 -3.3743 46 1 1.9136 6.4755 -2.5819 47 1 2.6390 7.4877 -4.7266 48 1 2.5153 5.8983 -5.5183 49 1 0.8013 8.1857 -7.8406 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452039641.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:25 Heat of formation + Delta-G solvation = -148.590793 kcal Electronic energy + Delta-G solvation = -25682.916596 eV Core-core repulsion = 22154.997447 eV Total energy + Delta-G solvation = -3527.919149 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.68914 -38.14879 -37.01822 -36.33178 -35.88781 -35.09470 -33.11801 -31.95204 -31.35125 -27.58979 -27.38675 -26.00894 -23.62758 -23.31646 -22.50968 -21.94478 -20.28757 -19.23634 -18.98306 -18.23652 -17.49945 -17.04974 -16.62282 -16.51171 -16.18953 -15.94424 -15.33191 -15.12319 -14.83007 -14.64141 -14.49165 -14.32097 -13.90716 -13.71547 -13.52951 -13.40911 -13.19907 -13.14091 -12.99865 -12.92715 -12.77951 -12.63140 -12.46734 -12.33916 -12.23676 -12.11971 -11.95849 -11.87453 -11.73102 -11.64455 -11.30765 -11.11296 -10.94400 -10.76732 -10.72409 -10.64289 -10.22294 -8.25532 -6.39521 -0.65523 1.41148 1.42984 1.54061 1.88704 2.38392 2.82224 3.07962 3.28058 3.67802 3.78776 3.83312 4.00529 4.14185 4.17144 4.19072 4.31685 4.35375 4.37191 4.49803 4.57090 4.59710 4.70563 4.72949 4.77148 4.80538 4.86640 4.89515 4.97074 5.06240 5.12624 5.18002 5.23162 5.24982 5.28132 5.29131 5.35084 5.37618 5.38739 5.47970 5.52084 5.60577 5.63403 5.68927 5.75476 6.06704 6.16456 6.74245 7.30660 8.86804 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013476 B = 0.003382 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.235123 B = 8277.589916 C = 9608.576895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.123 4.123 3 C -0.125 4.125 4 C -0.080 4.080 5 H 0.069 0.931 6 C -0.111 4.111 7 C -0.119 4.119 8 C -0.117 4.117 9 C -0.120 4.120 10 C -0.081 4.081 11 H 0.077 0.923 12 C 0.106 3.894 13 N -1.106 6.106 14 S 2.620 3.380 15 O -1.001 7.001 16 O -0.999 6.999 17 C -0.587 4.587 18 C 0.019 3.981 19 C -0.538 4.538 20 H 0.076 0.924 21 C -0.005 4.005 22 N -0.935 5.935 23 Si 0.974 3.026 24 H -0.271 1.271 25 H -0.283 1.283 26 H -0.257 1.257 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.046 0.954 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.059 0.941 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.070 0.930 43 H 0.082 0.918 44 H 0.423 0.577 45 H 0.141 0.859 46 H 0.143 0.857 47 H 0.006 0.994 48 H 0.007 0.993 49 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.069 -15.858 22.090 27.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.160 4.160 3 C -0.162 4.162 4 C -0.099 4.099 5 H 0.088 0.912 6 C -0.148 4.148 7 C -0.157 4.157 8 C -0.155 4.155 9 C -0.158 4.158 10 C -0.101 4.101 11 H 0.095 0.905 12 C -0.020 4.020 13 N -0.869 5.869 14 S 2.717 3.283 15 O -0.992 6.992 16 O -0.989 6.989 17 C -0.719 4.719 18 C -0.020 4.020 19 C -0.577 4.577 20 H 0.094 0.906 21 C -0.203 4.203 22 N -0.574 5.574 23 Si 0.797 3.203 24 H -0.196 1.196 25 H -0.209 1.209 26 H -0.181 1.181 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.081 0.919 42 H 0.089 0.911 43 H 0.100 0.900 44 H 0.260 0.740 45 H 0.160 0.840 46 H 0.161 0.839 47 H 0.024 0.976 48 H 0.025 0.975 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.787 -15.678 21.241 26.547 hybrid contribution -0.983 0.619 -0.307 1.202 sum 1.805 -15.058 20.934 25.850 Atomic orbital electron populations 1.21795 0.96172 1.01635 1.01655 1.21554 0.95554 0.96846 1.02087 1.21874 0.94590 0.97191 1.02570 1.21120 0.95755 0.94385 0.98633 0.91218 1.21545 1.00345 0.99245 0.93674 1.21564 1.01137 0.95027 0.97950 1.21506 1.00665 0.96315 0.96964 1.21676 1.01543 0.98676 0.93895 1.21310 1.00767 0.95304 0.92729 0.90507 1.21726 0.98562 0.81884 0.99806 1.55284 1.74031 1.28140 1.29429 1.04411 0.77995 0.72604 0.73338 1.93497 1.73453 1.46881 1.85331 1.93494 1.78710 1.61674 1.65043 1.30326 1.22945 1.11190 1.07463 1.18827 0.98891 0.94620 0.89623 1.21518 0.92217 1.39460 1.04499 0.90558 1.26122 1.03431 0.95026 0.95707 1.70104 1.36400 1.41192 1.09734 0.85314 0.78430 0.79120 0.77401 1.19633 1.20890 1.18061 0.92596 0.92557 0.93438 0.92538 0.91186 0.90655 0.92220 0.91084 0.92202 0.91752 0.91486 0.92202 0.91654 0.91017 0.91865 0.91113 0.90025 0.73999 0.84035 0.83869 0.97605 0.97514 0.92416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.09 9.91 71.98 0.71 -1.37 16 2 C -0.12 -1.59 5.69 30.59 0.17 -1.42 16 3 C -0.13 -1.71 3.76 30.59 0.11 -1.59 16 4 C -0.08 -1.10 2.19 -10.80 -0.02 -1.12 16 5 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 6 C -0.11 -1.27 5.21 30.59 0.16 -1.11 16 7 C -0.12 -1.29 5.65 30.59 0.17 -1.11 16 8 C -0.12 -1.39 5.92 30.60 0.18 -1.20 16 9 C -0.12 -1.66 4.80 30.60 0.15 -1.51 16 10 C -0.08 -1.27 2.07 -10.79 -0.02 -1.29 16 11 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 12 C 0.11 2.16 5.02 86.38 0.43 2.59 16 13 N -1.11 -26.66 5.76 -187.50 -1.08 -27.74 16 14 S 2.62 93.27 5.46 -56.49 -0.31 92.96 16 15 O -1.00 -42.12 18.08 -127.65 -2.31 -44.43 16 16 O -1.00 -42.17 17.50 -127.65 -2.23 -44.40 16 17 C -0.59 -21.96 6.01 71.98 0.43 -21.53 16 18 C 0.02 1.01 4.98 29.85 0.15 1.16 16 19 C -0.54 -29.78 9.11 25.60 0.23 -29.55 16 20 H 0.08 3.88 7.74 -2.91 -0.02 3.86 16 21 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 22 N -0.93 -57.09 13.29 21.45 0.28 -56.81 16 23 Si 0.97 43.22 29.54 68.60 2.03 45.25 16 24 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 25 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 26 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 27 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.06 0.70 8.14 -2.39 -0.02 0.69 16 29 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.07 0.79 6.57 -2.39 -0.02 0.77 16 32 H 0.07 0.96 4.83 -2.39 -0.01 0.95 16 33 H 0.06 0.92 6.28 -2.39 -0.01 0.90 16 34 H 0.07 0.74 6.57 -2.39 -0.02 0.72 16 35 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.07 0.73 6.32 -2.39 -0.02 0.71 16 38 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.07 0.97 6.54 -2.39 -0.02 0.96 16 41 H 0.06 0.88 6.90 -2.39 -0.02 0.86 16 42 H 0.07 1.60 7.69 -2.39 -0.02 1.58 16 43 H 0.08 1.44 6.59 -2.39 -0.02 1.43 16 44 H 0.42 8.45 7.37 -96.75 -0.71 7.74 16 45 H 0.14 4.57 8.14 -2.39 -0.02 4.55 16 46 H 0.14 4.67 8.14 -2.39 -0.02 4.65 16 47 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 48 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 49 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -73.92 382.43 -0.09 -74.01 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: 0.20 Total: 20.03 kcal Atomic # 6 Polarization: -62.19 SS G_CDS: 3.33 Total: -58.87 kcal Atomic # 7 Polarization: -83.76 SS G_CDS: -0.80 Total: -84.55 kcal Atomic # 8 Polarization: -84.30 SS G_CDS: -4.54 Total: -88.84 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 16 Polarization: 93.27 SS G_CDS: -0.31 Total: 92.96 kcal Total: -73.92 -0.09 -74.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452039641.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.578 kcal (2) G-P(sol) polarization free energy of solvation -73.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds