Wall clock time and date at job start Tue Mar 31 2020 12:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47231 * 2 1 4 4 C 1.53001 * 109.46845 * 240.00307 * 2 1 3 5 5 C 1.50699 * 109.46950 * 120.00526 * 2 1 3 6 6 O 1.20759 * 120.00093 * 359.97438 * 5 2 1 7 7 C 1.50707 * 119.99787 * 180.02562 * 5 2 1 8 8 C 1.52992 * 109.47053 * 179.97438 * 7 5 2 9 9 C 1.52996 * 109.47319 * 179.97438 * 8 7 5 10 10 C 1.50699 * 109.47602 * 179.97438 * 9 8 7 11 11 O 1.21286 * 119.99936 * 359.97438 * 10 9 8 12 12 N 1.34772 * 120.00217 * 180.02562 * 10 9 8 13 13 C 1.39943 * 120.00142 * 174.88898 * 12 10 9 14 14 C 1.39287 * 119.94535 * 145.78087 * 13 12 10 15 15 C 1.38491 * 120.42528 * 179.97438 * 14 13 12 16 16 C 1.37679 * 120.32381 * 359.97438 * 15 14 13 17 17 C 1.40748 * 119.88500 * 0.02562 * 16 15 14 18 18 C 1.41410 * 120.20884 * 179.97438 * 17 16 15 19 19 H 1.08000 * 119.99479 * 205.17834 * 18 17 16 20 20 C 1.39925 * 120.00126 * 25.17868 * 18 17 16 21 21 N 1.30839 * 120.00271 * 16.79548 * 20 18 17 22 22 Si 1.86799 * 120.00066 * 196.79538 * 20 18 17 23 23 H 1.48492 * 109.47286 * 94.96276 * 22 20 18 24 24 H 1.48506 * 109.47262 * 214.96375 * 22 20 18 25 25 H 1.48506 * 109.46958 * 334.95851 * 22 20 18 26 26 C 1.38246 * 119.94394 * 325.51381 * 13 12 10 27 27 H 1.08998 * 109.47040 * 299.99507 * 1 2 3 28 28 H 1.08996 * 109.47290 * 59.99794 * 1 2 3 29 29 H 1.09005 * 109.46802 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47310 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47152 * 300.00291 * 3 2 1 32 32 H 1.08998 * 109.46706 * 60.00289 * 3 2 1 33 33 H 1.09004 * 109.47521 * 300.00225 * 4 2 1 34 34 H 1.08996 * 109.47259 * 59.99880 * 4 2 1 35 35 H 1.09002 * 109.47101 * 179.97438 * 4 2 1 36 36 H 1.08992 * 109.47054 * 59.99741 * 7 5 2 37 37 H 1.09006 * 109.46437 * 299.99626 * 7 5 2 38 38 H 1.09002 * 109.47433 * 59.99870 * 8 7 5 39 39 H 1.09006 * 109.47000 * 299.99926 * 8 7 5 40 40 H 1.09006 * 109.47223 * 300.00033 * 9 8 7 41 41 H 1.09002 * 109.46775 * 59.99711 * 9 8 7 42 42 H 0.97005 * 119.99878 * 354.89041 * 12 10 9 43 43 H 1.07994 * 119.79263 * 359.97438 * 14 13 12 44 44 H 1.08000 * 119.83866 * 180.02562 * 15 14 13 45 45 H 1.07998 * 120.06026 * 180.02562 * 16 15 14 46 46 H 0.96988 * 120.00258 * 180.02562 * 21 20 18 47 47 H 1.07992 * 120.16132 * 359.97438 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0323 -0.7105 1.2304 6 8 1.2476 -1.1691 2.0255 7 6 3.5140 -0.8477 1.4692 8 6 3.7518 -1.6031 2.7782 9 6 5.2560 -1.7429 3.0203 10 6 5.4903 -2.4864 4.3100 11 8 4.5470 -2.8666 4.9709 12 7 6.7481 -2.7280 4.7297 13 6 6.9673 -3.3226 5.9774 14 6 8.0399 -4.1936 6.1537 15 6 8.2665 -4.7871 7.3843 16 6 7.4334 -4.5219 8.4479 17 6 6.3456 -3.6438 8.2847 18 6 5.4853 -3.3670 9.3723 19 1 4.4682 -3.0529 9.1898 20 6 5.9518 -3.5000 10.6848 21 7 7.2377 -3.5542 10.9197 22 14 4.7385 -3.6001 12.1016 23 1 4.4739 -5.0245 12.4270 24 1 5.3092 -2.9183 13.2911 25 1 3.4679 -2.9367 11.7131 26 6 6.1223 -3.0402 7.0345 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9562 0.8900 33 1 1.6766 -1.7489 -1.2494 34 1 1.6766 -0.2074 -2.1392 35 1 3.1300 -0.7208 -1.2496 36 1 3.9647 0.1425 1.5344 37 1 3.9654 -1.3988 0.6441 38 1 3.3010 -2.5934 2.7134 39 1 3.3004 -1.0516 3.6030 40 1 5.7071 -2.2946 2.1954 41 1 5.7072 -0.7528 3.0850 42 1 7.5013 -2.4896 4.1669 43 1 8.6991 -4.4075 5.3254 44 1 9.1012 -5.4607 7.5104 45 1 7.6143 -4.9868 9.4057 46 1 7.5611 -3.6468 11.8294 47 1 5.2933 -2.3613 6.9000 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456745480.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:08 Heat of formation + Delta-G solvation = -82.842874 kcal Electronic energy + Delta-G solvation = -25454.933635 eV Core-core repulsion = 21794.421579 eV Total energy + Delta-G solvation = -3660.512057 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.35179 -39.60467 -37.21080 -36.05225 -34.57908 -34.16505 -32.98261 -29.79047 -29.61411 -27.90063 -27.77482 -27.15697 -25.27306 -24.13361 -21.93468 -21.00836 -20.64446 -19.51099 -18.58588 -17.66175 -16.68194 -16.34365 -16.14768 -15.52130 -15.30609 -15.14895 -14.92582 -14.55942 -14.26861 -14.13791 -13.57663 -13.36484 -12.92465 -12.90165 -12.68161 -12.63103 -12.60901 -12.22911 -12.13013 -12.01455 -11.81028 -11.60884 -11.58106 -11.33470 -11.18420 -11.13554 -11.10874 -10.87658 -10.79959 -10.42445 -10.12044 -9.65382 -9.57831 -9.34347 -9.03743 -8.89855 -7.41929 -6.88097 -6.68006 -4.30439 1.80134 2.64410 2.87025 3.12177 3.18006 3.23233 3.41086 3.53359 3.82990 4.00052 4.31318 4.45427 4.55554 4.67831 4.76594 4.88158 4.95105 5.12323 5.14593 5.21618 5.27477 5.33013 5.37948 5.41025 5.47607 5.48900 5.54174 5.60440 5.76181 5.81106 5.82120 5.92494 6.07211 6.27274 6.34039 6.42001 6.81787 7.05973 7.09129 7.11230 7.29049 7.35429 7.60518 7.76917 8.00879 8.13478 8.22314 8.30779 8.67283 8.79679 8.97950 9.02310 10.24946 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017901 B = 0.002341 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.774691 B =11959.485442 C =13183.367399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.118 4.118 3 C -0.139 4.139 4 C -0.138 4.138 5 C 0.361 3.639 6 O -0.441 6.441 7 C -0.172 4.172 8 C -0.097 4.097 9 C -0.138 4.138 10 C 0.500 3.500 11 O -0.515 6.515 12 N -0.671 5.671 13 C 0.151 3.849 14 C -0.263 4.263 15 C -0.093 4.093 16 C -0.172 4.172 17 C 0.119 3.881 18 C -0.458 4.458 19 H 0.078 0.922 20 C 0.075 3.925 21 N -0.796 5.796 22 Si 0.909 3.091 23 H -0.268 1.268 24 H -0.278 1.278 25 H -0.261 1.261 26 C -0.210 4.210 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.397 0.603 43 H 0.088 0.912 44 H 0.091 0.909 45 H 0.119 0.881 46 H 0.279 0.721 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.115 8.380 -22.063 23.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.119 4.119 3 C -0.196 4.196 4 C -0.196 4.196 5 C 0.235 3.765 6 O -0.312 6.312 7 C -0.209 4.209 8 C -0.135 4.135 9 C -0.178 4.178 10 C 0.286 3.714 11 O -0.389 6.389 12 N -0.315 5.315 13 C 0.059 3.941 14 C -0.284 4.284 15 C -0.112 4.112 16 C -0.192 4.192 17 C 0.116 3.884 18 C -0.487 4.487 19 H 0.097 0.903 20 C -0.142 4.142 21 N -0.422 5.422 22 Si 0.733 3.267 23 H -0.193 1.193 24 H -0.203 1.203 25 H -0.185 1.185 26 C -0.232 4.232 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.117 0.883 37 H 0.116 0.884 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.108 0.892 41 H 0.110 0.890 42 H 0.231 0.769 43 H 0.106 0.894 44 H 0.109 0.891 45 H 0.137 0.863 46 H 0.090 0.910 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -5.092 7.887 -20.973 22.978 hybrid contribution 0.168 0.148 0.287 0.364 sum -4.924 8.035 -20.686 22.731 Atomic orbital electron populations 1.21725 0.92723 1.02709 1.02067 1.21213 0.97785 0.97222 0.95642 1.21835 1.01525 0.93462 1.02779 1.21835 1.01509 1.00419 0.95808 1.24597 0.91324 0.75429 0.85180 1.90436 1.59065 1.37631 1.44104 1.22159 0.95308 1.03164 1.00261 1.21150 0.94094 1.02061 0.96206 1.21664 0.98668 1.01420 0.96063 1.20644 0.83068 0.80263 0.87377 1.90773 1.41545 1.49919 1.56696 1.43515 1.07723 1.61338 1.18956 1.17447 0.97642 0.95753 0.83212 1.20037 1.03078 1.07370 0.97923 1.20461 0.98520 0.99117 0.93092 1.21346 0.98268 1.01455 0.98132 1.17507 0.91340 0.88366 0.91189 1.19602 0.99020 1.40208 0.89902 0.90344 1.25904 0.95498 0.92264 1.00522 1.69832 1.14082 1.35614 1.22652 0.86291 0.81373 0.79304 0.79714 1.19345 1.20336 1.18522 1.20974 1.03190 1.06108 0.92880 0.92061 0.92140 0.92094 0.91665 0.91500 0.92148 0.92184 0.91509 0.91677 0.88338 0.88388 0.90550 0.90439 0.89169 0.88990 0.76906 0.89361 0.89086 0.86322 0.90993 0.87683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.06 7.76 37.16 0.29 -0.77 16 2 C -0.12 -0.84 0.87 -155.66 -0.14 -0.98 16 3 C -0.14 -0.76 8.26 37.16 0.31 -0.45 16 4 C -0.14 -0.74 8.25 37.16 0.31 -0.43 16 5 C 0.36 3.62 5.97 -29.03 -0.17 3.45 16 6 O -0.44 -6.38 15.61 6.00 0.09 -6.28 16 7 C -0.17 -1.39 4.97 -27.88 -0.14 -1.53 16 8 C -0.10 -1.19 3.79 -26.74 -0.10 -1.29 16 9 C -0.14 -1.55 5.70 -27.89 -0.16 -1.70 16 10 C 0.50 8.83 7.56 -10.99 -0.08 8.75 16 11 O -0.51 -11.79 13.73 5.55 0.08 -11.72 16 12 N -0.67 -11.95 5.34 -9.91 -0.05 -12.00 16 13 C 0.15 3.49 6.25 -83.76 -0.52 2.97 16 14 C -0.26 -5.89 9.97 -39.10 -0.39 -6.28 16 15 C -0.09 -2.22 10.02 -39.69 -0.40 -2.61 16 16 C -0.17 -4.63 8.69 -38.84 -0.34 -4.96 16 17 C 0.12 3.36 5.57 -106.85 -0.59 2.76 16 18 C -0.46 -12.88 9.05 -37.74 -0.34 -13.23 16 19 H 0.08 2.19 7.90 -52.49 -0.41 1.78 16 20 C 0.08 1.97 5.16 -17.34 -0.09 1.88 16 21 N -0.80 -21.10 10.94 55.55 0.61 -20.50 16 22 Si 0.91 19.57 29.59 -169.99 -5.03 14.54 16 23 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 24 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 25 H -0.26 -5.64 7.11 56.52 0.40 -5.23 16 26 C -0.21 -5.60 8.39 -38.68 -0.32 -5.92 16 27 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 30 H 0.06 0.28 7.28 -51.93 -0.38 -0.10 16 31 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 35 H 0.06 0.27 7.29 -51.93 -0.38 -0.11 16 36 H 0.10 0.59 7.38 -51.93 -0.38 0.21 16 37 H 0.10 0.57 7.38 -51.93 -0.38 0.19 16 38 H 0.08 1.10 8.06 -51.93 -0.42 0.69 16 39 H 0.08 1.14 8.06 -51.93 -0.42 0.73 16 40 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.40 5.32 8.82 -40.82 -0.36 4.96 16 43 H 0.09 1.70 8.06 -52.49 -0.42 1.27 16 44 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 45 H 0.12 3.26 6.16 -52.49 -0.32 2.93 16 46 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 47 H 0.11 2.89 6.48 -52.49 -0.34 2.55 16 LS Contribution 385.17 15.07 5.80 5.80 Total: -1.00 -33.99 385.17 -8.97 -42.96 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -7.58 Total: 7.56 kcal Atomic # 6 Polarization: -17.47 SS G_CDS: -2.89 Total: -20.36 kcal Atomic # 7 Polarization: -33.05 SS G_CDS: 0.55 Total: -32.50 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: 0.17 Total: -18.00 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.03 Total: 14.54 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.99 -8.97 -42.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456745480.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.885 kcal (2) G-P(sol) polarization free energy of solvation -33.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds