Wall clock time and date at job start Tue Mar 31 2020 12:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47231 * 2 1 4 4 C 1.53001 * 109.46845 * 240.00307 * 2 1 3 5 5 C 1.50699 * 109.46950 * 120.00526 * 2 1 3 6 6 O 1.20759 * 120.00093 * 359.97438 * 5 2 1 7 7 C 1.50707 * 119.99787 * 180.02562 * 5 2 1 8 8 C 1.52992 * 109.47053 * 179.97438 * 7 5 2 9 9 C 1.52996 * 109.47319 * 179.97438 * 8 7 5 10 10 C 1.50699 * 109.47602 * 179.97438 * 9 8 7 11 11 O 1.21286 * 119.99936 * 359.97438 * 10 9 8 12 12 N 1.34772 * 120.00217 * 180.02562 * 10 9 8 13 13 C 1.39943 * 120.00142 * 174.88898 * 12 10 9 14 14 C 1.39287 * 119.94535 * 145.78087 * 13 12 10 15 15 C 1.38491 * 120.42528 * 179.97438 * 14 13 12 16 16 C 1.37679 * 120.32381 * 359.97438 * 15 14 13 17 17 C 1.40748 * 119.88500 * 0.02562 * 16 15 14 18 18 C 1.41410 * 120.20884 * 179.97438 * 17 16 15 19 19 H 1.08000 * 119.99479 * 205.17834 * 18 17 16 20 20 C 1.39925 * 120.00126 * 25.17868 * 18 17 16 21 21 N 1.30839 * 120.00271 * 16.79548 * 20 18 17 22 22 Si 1.86799 * 120.00066 * 196.79538 * 20 18 17 23 23 H 1.48492 * 109.47286 * 94.96276 * 22 20 18 24 24 H 1.48506 * 109.47262 * 214.96375 * 22 20 18 25 25 H 1.48506 * 109.46958 * 334.95851 * 22 20 18 26 26 C 1.38246 * 119.94394 * 325.51381 * 13 12 10 27 27 H 1.08998 * 109.47040 * 299.99507 * 1 2 3 28 28 H 1.08996 * 109.47290 * 59.99794 * 1 2 3 29 29 H 1.09005 * 109.46802 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47310 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47152 * 300.00291 * 3 2 1 32 32 H 1.08998 * 109.46706 * 60.00289 * 3 2 1 33 33 H 1.09004 * 109.47521 * 300.00225 * 4 2 1 34 34 H 1.08996 * 109.47259 * 59.99880 * 4 2 1 35 35 H 1.09002 * 109.47101 * 179.97438 * 4 2 1 36 36 H 1.08992 * 109.47054 * 59.99741 * 7 5 2 37 37 H 1.09006 * 109.46437 * 299.99626 * 7 5 2 38 38 H 1.09002 * 109.47433 * 59.99870 * 8 7 5 39 39 H 1.09006 * 109.47000 * 299.99926 * 8 7 5 40 40 H 1.09006 * 109.47223 * 300.00033 * 9 8 7 41 41 H 1.09002 * 109.46775 * 59.99711 * 9 8 7 42 42 H 0.97005 * 119.99878 * 354.89041 * 12 10 9 43 43 H 1.07994 * 119.79263 * 359.97438 * 14 13 12 44 44 H 1.08000 * 119.83866 * 180.02562 * 15 14 13 45 45 H 1.07998 * 120.06026 * 180.02562 * 16 15 14 46 46 H 0.96988 * 120.00258 * 180.02562 * 21 20 18 47 47 H 1.07992 * 120.16132 * 359.97438 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0323 -0.7105 1.2304 6 8 1.2476 -1.1691 2.0255 7 6 3.5140 -0.8477 1.4692 8 6 3.7518 -1.6031 2.7782 9 6 5.2560 -1.7429 3.0203 10 6 5.4903 -2.4864 4.3100 11 8 4.5470 -2.8666 4.9709 12 7 6.7481 -2.7280 4.7297 13 6 6.9673 -3.3226 5.9774 14 6 8.0399 -4.1936 6.1537 15 6 8.2665 -4.7871 7.3843 16 6 7.4334 -4.5219 8.4479 17 6 6.3456 -3.6438 8.2847 18 6 5.4853 -3.3670 9.3723 19 1 4.4682 -3.0529 9.1898 20 6 5.9518 -3.5000 10.6848 21 7 7.2377 -3.5542 10.9197 22 14 4.7385 -3.6001 12.1016 23 1 4.4739 -5.0245 12.4270 24 1 5.3092 -2.9183 13.2911 25 1 3.4679 -2.9367 11.7131 26 6 6.1223 -3.0402 7.0345 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9562 0.8900 33 1 1.6766 -1.7489 -1.2494 34 1 1.6766 -0.2074 -2.1392 35 1 3.1300 -0.7208 -1.2496 36 1 3.9647 0.1425 1.5344 37 1 3.9654 -1.3988 0.6441 38 1 3.3010 -2.5934 2.7134 39 1 3.3004 -1.0516 3.6030 40 1 5.7071 -2.2946 2.1954 41 1 5.7072 -0.7528 3.0850 42 1 7.5013 -2.4896 4.1669 43 1 8.6991 -4.4075 5.3254 44 1 9.1012 -5.4607 7.5104 45 1 7.6143 -4.9868 9.4057 46 1 7.5611 -3.6468 11.8294 47 1 5.2933 -2.3613 6.9000 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456745480.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:07 Heat of formation + Delta-G solvation = -103.776628 kcal Electronic energy + Delta-G solvation = -25455.841391 eV Core-core repulsion = 21794.421579 eV Total energy + Delta-G solvation = -3661.419812 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.33986 -40.95697 -39.03491 -36.69815 -36.25418 -35.29079 -34.81953 -31.77277 -30.84817 -29.25863 -28.15577 -27.87769 -27.27645 -25.13930 -23.27259 -22.74156 -21.97363 -21.01556 -19.56166 -19.28880 -18.05787 -17.43639 -17.14530 -17.02308 -16.73572 -16.47494 -16.12366 -16.11272 -15.29093 -15.08366 -14.85426 -14.63884 -14.54946 -14.21058 -13.95867 -13.55547 -13.31736 -13.19513 -13.10159 -13.04069 -12.94917 -12.80490 -12.76502 -12.75127 -12.52491 -12.46331 -12.20511 -11.97504 -11.85796 -11.73036 -11.70654 -11.53285 -11.17544 -10.88675 -10.66234 -10.30623 -9.42006 -8.76584 -8.62468 -6.40104 0.86400 0.97999 1.05395 1.33130 1.45812 1.47085 1.84780 2.18414 2.28309 2.70938 3.02155 3.66041 3.72173 3.80444 3.94111 4.02433 4.06587 4.07116 4.36600 4.45625 4.60902 4.62370 4.65998 4.70662 4.72295 4.75989 4.81182 4.88776 4.99565 5.02155 5.04413 5.07749 5.08336 5.11655 5.13190 5.23582 5.25961 5.31133 5.36103 5.40682 5.41598 5.75989 5.85549 6.05935 6.09486 6.33384 6.62403 6.66021 6.69944 6.91328 6.99182 7.40572 8.30632 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017901 B = 0.002341 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.774691 B =11959.485442 C =13183.367399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.115 4.115 3 C -0.137 4.137 4 C -0.137 4.137 5 C 0.356 3.644 6 O -0.502 6.502 7 C -0.163 4.163 8 C -0.096 4.096 9 C -0.119 4.119 10 C 0.491 3.509 11 O -0.578 6.578 12 N -0.659 5.659 13 C 0.158 3.842 14 C -0.250 4.250 15 C -0.092 4.092 16 C -0.199 4.199 17 C 0.087 3.913 18 C -0.504 4.504 19 H 0.058 0.942 20 C 0.038 3.962 21 N -0.821 5.821 22 Si 0.981 3.019 23 H -0.259 1.259 24 H -0.259 1.259 25 H -0.268 1.268 26 C -0.240 4.240 27 H 0.040 0.960 28 H 0.082 0.918 29 H 0.042 0.958 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.045 0.955 33 H 0.047 0.953 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.133 0.867 37 H 0.137 0.863 38 H 0.042 0.958 39 H 0.037 0.963 40 H 0.138 0.862 41 H 0.131 0.869 42 H 0.424 0.576 43 H 0.135 0.865 44 H 0.125 0.875 45 H 0.104 0.896 46 H 0.290 0.710 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.572 9.262 -25.301 26.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.116 4.116 3 C -0.194 4.194 4 C -0.194 4.194 5 C 0.234 3.766 6 O -0.378 6.378 7 C -0.200 4.200 8 C -0.135 4.135 9 C -0.159 4.159 10 C 0.280 3.720 11 O -0.456 6.456 12 N -0.305 5.305 13 C 0.064 3.936 14 C -0.271 4.271 15 C -0.110 4.110 16 C -0.219 4.219 17 C 0.084 3.916 18 C -0.534 4.534 19 H 0.076 0.924 20 C -0.177 4.177 21 N -0.447 5.447 22 Si 0.802 3.198 23 H -0.183 1.183 24 H -0.183 1.183 25 H -0.192 1.192 26 C -0.262 4.262 27 H 0.059 0.941 28 H 0.101 0.899 29 H 0.061 0.939 30 H 0.105 0.895 31 H 0.101 0.899 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.101 0.899 35 H 0.106 0.894 36 H 0.151 0.849 37 H 0.154 0.846 38 H 0.061 0.939 39 H 0.056 0.944 40 H 0.155 0.845 41 H 0.149 0.851 42 H 0.263 0.737 43 H 0.153 0.847 44 H 0.143 0.857 45 H 0.122 0.878 46 H 0.101 0.899 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.486 8.797 -24.281 25.945 hybrid contribution -0.585 -0.123 1.143 1.290 sum -3.071 8.673 -23.138 24.900 Atomic orbital electron populations 1.21751 0.94006 1.01569 1.02129 1.21254 0.96899 0.98407 0.95069 1.21871 1.02884 0.91751 1.02939 1.21867 1.02900 0.99586 0.95010 1.25379 0.92140 0.73856 0.85196 1.90436 1.60609 1.40442 1.46319 1.22212 0.94252 1.04776 0.98750 1.21058 0.94650 1.00335 0.97427 1.21722 0.98031 1.02880 0.93225 1.21974 0.81903 0.79216 0.88866 1.90769 1.43487 1.52323 1.59053 1.43447 1.09157 1.60625 1.17295 1.17555 0.96484 0.95124 0.84427 1.20511 1.02655 1.05291 0.98645 1.20867 0.98454 0.98989 0.92722 1.21307 0.99306 1.02442 0.98858 1.17859 0.92389 0.89371 0.92003 1.19720 0.98584 1.43274 0.91806 0.92362 1.26683 0.97454 0.91204 1.02345 1.69851 1.15429 1.35469 1.23919 0.85219 0.78415 0.79705 0.76481 1.18347 1.18257 1.19214 1.20934 1.03949 1.07132 0.94207 0.94055 0.89927 0.93897 0.89477 0.89880 0.93540 0.93338 0.89930 0.89434 0.84936 0.84568 0.93916 0.94445 0.84460 0.85132 0.73741 0.84674 0.85749 0.87772 0.89928 0.90277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 7.76 71.98 0.56 -1.62 16 2 C -0.12 -1.45 0.87 -52.93 -0.05 -1.50 16 3 C -0.14 -1.09 8.26 71.98 0.59 -0.50 16 4 C -0.14 -1.01 8.25 71.98 0.59 -0.42 16 5 C 0.36 6.97 5.97 29.10 0.17 7.15 16 6 O -0.50 -15.67 15.61 -1.45 -0.02 -15.70 16 7 C -0.16 -2.16 4.97 29.85 0.15 -2.01 16 8 C -0.10 -2.31 3.79 30.59 0.12 -2.20 16 9 C -0.12 -2.27 5.70 29.85 0.17 -2.10 16 10 C 0.49 16.99 7.56 87.66 0.66 17.66 16 11 O -0.58 -27.95 13.73 -3.05 -0.04 -27.99 16 12 N -0.66 -22.08 5.34 -303.65 -1.62 -23.70 16 13 C 0.16 7.21 6.25 38.10 0.24 7.45 16 14 C -0.25 -10.58 9.97 22.58 0.23 -10.35 16 15 C -0.09 -4.26 10.02 22.20 0.22 -4.03 16 16 C -0.20 -11.03 8.69 22.75 0.20 -10.83 16 17 C 0.09 5.17 5.57 -21.31 -0.12 5.05 16 18 C -0.50 -30.45 9.05 23.46 0.21 -30.24 16 19 H 0.06 3.58 7.90 -2.91 -0.02 3.56 16 20 C 0.04 2.07 5.16 85.25 0.44 2.51 16 21 N -0.82 -44.84 10.94 21.82 0.24 -44.60 16 22 Si 0.98 41.56 29.59 68.60 2.03 43.59 16 23 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 24 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 25 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 26 C -0.24 -13.50 8.39 22.85 0.19 -13.30 16 27 H 0.04 0.79 8.10 -2.39 -0.02 0.78 16 28 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.04 0.81 8.10 -2.38 -0.02 0.79 16 30 H 0.09 0.33 7.28 -2.39 -0.02 0.31 16 31 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 35 H 0.09 0.27 7.29 -2.39 -0.02 0.26 16 36 H 0.13 0.93 7.38 -2.39 -0.02 0.91 16 37 H 0.14 0.84 7.38 -2.38 -0.02 0.82 16 38 H 0.04 1.29 8.06 -2.39 -0.02 1.27 16 39 H 0.04 1.17 8.06 -2.38 -0.02 1.16 16 40 H 0.14 1.46 8.14 -2.38 -0.02 1.44 16 41 H 0.13 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.42 9.50 8.82 -92.70 -0.82 8.68 16 43 H 0.14 4.46 8.06 -2.91 -0.02 4.44 16 44 H 0.12 4.87 8.06 -2.91 -0.02 4.85 16 45 H 0.10 5.95 6.16 -2.91 -0.02 5.94 16 46 H 0.29 14.13 8.30 -92.72 -0.77 13.36 16 47 H 0.08 4.74 6.48 -2.91 -0.02 4.72 16 Total: -1.00 -85.47 385.17 5.31 -80.16 By element: Atomic # 1 Polarization: 27.39 SS G_CDS: 0.14 Total: 27.53 kcal Atomic # 6 Polarization: -43.87 SS G_CDS: 4.58 Total: -39.29 kcal Atomic # 7 Polarization: -66.92 SS G_CDS: -1.38 Total: -68.30 kcal Atomic # 8 Polarization: -43.62 SS G_CDS: -0.06 Total: -43.69 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.59 kcal Total: -85.47 5.31 -80.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456745480.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.619 kcal (2) G-P(sol) polarization free energy of solvation -85.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds